TCONS_00048481 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048481
Unique NameTCONS_00048481
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length374

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048481 ID=TCONS_00048481|Name=TCONS_00048481|organism=Clytia hemisphaerica|type=transcript|length=374bp
TTTTTCtggtcaaattttcattttttggttaAAACTCAAATATAACCTAT
TCACAACAACTTCCCAAAGTTTCAGGTcataaaaagaagaagaaggttaa
aaattttagttataaagatgcttacctaGACAGAAATTGGTCTCCGCCCG
TTTGCGCCCGTATTTCCGCCCAGAGATAAAACAGCTATAATTCTGCTTCT
AGCGCTTCAAGCTGCTTGAAATTTTTTACGGGACGTCTTAAAGTCGCAAA
TATTCTTTATGTTAAGTTCAAAAGTAGCTTACGCGTACCGCGATCGAGTT
ATAAACATTGTAAATATTCACCGCCCTTGAAATCATTTGAGAGGTGGGTT
GACTGAGAGTAACCTCTGTGCTTT
Run BLAST on NCBI

transcript from alignment at scaffold_142:830793..831166

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048481 ID=TCONS_00048481|Name=TCONS_00048481|organism=Clytia hemisphaerica|type=transcript|length=374bp|location=Sequence derived from alignment at scaffold_142:830793..831166 (Clytia hemisphaerica)
AAAGCACAGAGGTTACTCTCAGTCAACCCACCTCTCAAATGATTTCAAGG
GCGGTGAATATTTACAATGTTTATAACTCGATCGCGGTACGCGTAAGCTA
CTTTTGAACTTAACATAAAGAATATTTGCGACTTTAAGACGTCCCGTAAA
AAATTTCAAGCAGCTTGAAGCGCTAGAAGCAGAATTATAGCTGTTTTATC
TCTGGGCGGAAATACGGGCGCAAACGGGCGGAGACCAATTTCTGTCtagg
taagcatctttataactaaaatttttaaccttcttcttctttttatgACC
TGAAACTTTGGGAAGTTGTTGTGAATAGGTTATATTTGAGTTTtaaccaa
aaaatgaaaatttgaccaGAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030835XLOC_030835Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048481-exon-scaffold_142-1491911889:830793..831166TCONS_00048481-exon-scaffold_142-1491911889:830793..831166Clytia hemisphaericaexon
TCONS_00048481-exon-scaffold_142-1510915933:830793..831166TCONS_00048481-exon-scaffold_142-1510915933:830793..831166Clytia hemisphaericaexon
TCONS_00048481-exon-scaffold_142-1575043694:830793..831166TCONS_00048481-exon-scaffold_142-1575043694:830793..831166Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_142supercontigscaffold_142:830793..831166 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.67039	3.30916	3.19562	3.29307	16.5046	12.9014	42.0189	40.5735	54.0655	37.7486	34.4487	60.6005	36.531	31.7213	28.1463	13.075	16.2916	20.739	44.8681	40.8873	31.268	23.6838	15.0635	18.6551	42.7266	44.1682	28.3421	28.1966	8.08384	8.65639
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048481 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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