Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048445 ID=TCONS_00048445|Name=TCONS_00048445|organism=Clytia hemisphaerica|type=transcript|length=3060bpRun BLAST on NCBI protein sequence of TCONS_00048445-protein >TCONS_00048445-protein ID=TCONS_00048445-protein|Name=TCONS_00048445-protein|organism=Clytia hemisphaerica|type=polypeptide|length=280bp MDIRRAPTIDEMKDVYIVQTLMETDLYKLLKTQKLSNDHICYFLYQILRGRun BLAST on NCBI transcript from alignment at scaffold_142:988516..997680- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00048445 ID=TCONS_00048445|Name=TCONS_00048445|organism=Clytia hemisphaerica|type=transcript|length=9165bp|location=Sequence derived from alignment at scaffold_142:988516..997680- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_142:988516..997680- >TCONS_00048445 ID=TCONS_00048445|Name=TCONS_00048445|organism=Clytia hemisphaerica|type=CDS|length=6744bp|location=Sequence derived from alignment at scaffold_142:988516..997680- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00048445 vs. Swiss-Prot (Human)
Match: MK01 (Mitogen-activated protein kinase 1 OS=Homo sapiens GN=MAPK1 PE=1 SV=3) HSP 1 Score: 442.965 bits (1138), Expect = 1.107e-145 Identity = 215/262 (82.06%), Postives = 228/262 (87.02%), Query Frame = 2 Query: 5 IINIMDIRRAPTIDEMKDVYIVQTLMETDLYKLLKTQKLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGILTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLMNKPLFPGKHYLDQLNLILDVLGSPDNNALQFIKNEKARSYLMGLPVKKRKQWPTLFPDASPNALDLLDKLLTFNPDHRVTVEQALAHPYLEQYYDPQDEPVAEQPFTFDTELDDLPKERLK 790 II I DI RAPTI++MKDVYIVQ LMETDLYKLLKTQ LSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTG LTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEML N+P+FPGKHYLDQLN IL +LGSP L I N KAR+YL+ LP K + W LFP+A ALDLLDK+LTFNP R+ VEQALAHPYLEQYYDP DEP+AE PF FD ELDDLPKE+LK Sbjct: 83 IIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAHPYLEQYYDPSDEPIAEAPFKFDMELDDLPKEKLK 344 The following BLAST results are available for this feature:
BLAST of TCONS_00048445 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|