TCONS_00048400 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048400
Unique NameTCONS_00048400
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length636

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048400 ID=TCONS_00048400|Name=TCONS_00048400|organism=Clytia hemisphaerica|type=transcript|length=636bp
CACAATCTACTGGATGTTTCCTGAAACCTTGTGGATTAGGAGCAAATGAT
TGTTTATTCGACGGTCAAGGAATGTGTTTTTGGAAGGACGCATCAAGCAG
TACAAATTACATGTGGAAAAGACACAAAGGGAAAACACCGAGTGGTCGAA
CTGGACCTAATTGCGATCACTCTACTGGACAATCAACACGTGACGAGTCG
TCCTCACCGGCCAGAACTGGAAATAAAGCATCTCTGATCAGTAACAAGAT
ATTCTCTGCCACACTTGGTCGTTGCGTCACCTTCTTCTATAGTATGCATG
GACTCGGTTGTGGAGCAATGAGACTCTTTGTTGTCGATGTTGGCTCAGGA
GTTGAGCACAAAGTATGGGAGAAGACTGGACCCCAAGGTTCAGCGTGGAA
GGAAGCAGAAGTCGATGTCCCTTACAATACAGATTATAAGATTCGATTTG
AATCAGAACGTGGACCATCTTTCCAAGGAGATCTTGGATTAGACGACATC
TTCATAGCAGAAGCGAAATGCTCAGAGAAACACAATCTCGGGCCGAAAGA
AAAGCCGACGACCACCCCAGTCACCAcgacaacaacaacgacaaccACAA
CGACCACAACAACAAGAGCTCCAACGACAACCATGG
Run BLAST on NCBI

transcript from alignment at scaffold_142:853858..857022-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048400 ID=TCONS_00048400|Name=TCONS_00048400|organism=Clytia hemisphaerica|type=transcript|length=3165bp|location=Sequence derived from alignment at scaffold_142:853858..857022- (Clytia hemisphaerica)
CACAATCTACTGGATGTTTCCTGAAACCTTGTGGATTAGGTAGGTCTAAG
TATTTTGTATTTTAGAGAAGCGTCTACGAATACACCTAGAAAGTATATCT
TTAAAAATTATATTAGTTTAACGTTTAAAATATCAGTTTATTCATCCCAC
ATGTAATTTGAATCTGAAAAATGCCCCACATGACTGAATAATAGGAATTA
CTTGGACTAGAGATAGAGGTCCAATATATTCATGATCAAAATAAATAGTA
TGGTTTGTTTAATACACAATTTAACTTGTGTCAAAAGGTTATTAGATTTC
ATCGGTCTTGTTAGATCTTGAGTCAAATTTATAAAAAAAGTCCTTAAAAG
TGACTGAAAACTCAGACTCAGACTCTAAGCAGCCAATTCCTGTCTTCGGT
CACGTTCCAAAAATAGTTATTTTCTGTTAAATTATTCTCCAGGAGCAAAT
GATTGTTTATTCGACGGTCAAGGAATGTGTTTTTGGAAGGACGCATCAAG
CAGTACAAATTACATGTGGAAAAGACACAAAGGGAAAACACCGAGTGGTC
GAACTGGACCTAATTGCGATCACTCTACTGGACAATCAACACGTGACGGT
AAGTCAATCAAACAGACACAAAGTGAATCTATAACGTTCATGAAACGTAG
AAGCAACATTGTGTGTGTTTGTCAGCTAATTTTATTCTTGAAAGTAAATA
TAAATCTTGAGATCTACAATAGTTGCCAATCCTCCAGACAATGTTGTCTG
CGCGGGATATGGACCGGCCAAGGGCTCTTCCAGAAAAAATCCGTTCATGG
GGGGTGGAGGATATATTATTTTTTTCATGAATTACCCCTGGACATCTTGA
TTTTTAACCCCCTGGACACGGGTTATACCCCTGGACAAAAATCAAATCAA
CCCAGTGGACACAAAAAATTACCCCTGGAAATTGAAATTTACCCCCTGGA
CATTGCAATTTTTTGGTACTTTTTCAATACCCCTGGACAATTCATCCTCC
ACCCCCCATGAACGGATTTTTTCTGGAAGAGCCCAATGAAGCGTTCTTTT
CCGTCAATATTGCTCGTAGGGCTAGCGGAGGTATTGCCTTGTTTCTAACT
TTGACCAGCGGAAATGCCATTATATATTGGCAAAAATTGTAGCAAGAATC
AATTAATGTCCTATTTCTTGGAGTAAACTTAAGAATTCCTCTGAGAATCA
ATTACCATAGCAAAAACGAAACTAACGTTGTTCATAGTGTAATTTATGAA
AAGGTCTATCAATTGAAAAGAGTGGTAGGTCGGTGACAAGAGCAGCTATG
GCCACTTAAATAGCACTCATTCAAGAAATGGTGGTCTAGGTGCTAATAAT
TAGTAGGTGAATTACGACCTTTGTATTATTTTACCTTCGTAATCATTTCA
GGACATTACATGTACACAGAGTCGTCCTCACCGGCCAGAACTGGAAATAA
AGCATCTCTGATCAGTAACAAGATATTCTCTGCCACACTTGGTCGTTGCG
TCACCTTCTTCTATAGTATGCATGGACTCGGTTGTGGAGCAATGAGACTC
TTTGTTGTCGATGTTGGCTCAGGTAAGGAATAGTTCCCATTTCTAAATCA
AGAGTTGTATTCTAACAGTTCCAAGTTTCACGATGAAAGCCATTACTGAA
AAAAGCAAAGCAAAATTTTGAAGATTTTAATACACACCGAGAAGCATAGT
AGCATAATAGTATTTTCAGTAGTTTTTATCACTCGCGTACTTAGATGGAA
AAAGGTCAGTCAAAATAACGGAGAGTACTACTAGTACTTTTCAGAAATTT
CAAACTGTTTCTCATCAAGGCAGCCTAAGTATCATATTAAGACTCCAAGC
CCTAATCATCATCAGCAAATCCTTGTCACAACTTAAGGGAACTAACTTCG
CTAAGGAGACTTGATTCTTTATTTTTGCAAATTCTGATAAAACTCACTAA
AACTAGTTCTCATAAAGCATGTAAAAGAAGTGACCGGTTACTTGAACTAC
AAGATATCATCATTGCTTTTTGTAGGAGTTGAGCACAAAGTATGGGAGAA
GACTGGACCCCAAGGTTCAGCGTGGAAGGAAGCAGAAGTCGATGTCCCTT
ACAATACAGATTATAAGGTAAACCGTGGAACCTAACCTCTACCAATGAAA
TTTGCACATGTAGCTAAGGGGAATTTCGTTGGAAAGGTTATTACTTCAAC
CAGGCCTAAATCGTCGATGTAGCAATTTTTGCATTGCTAATTACGCCAGC
TGACAATATGTGTCATGTTGCTTTATAAATCTCATCCATATGCATCTCTG
CCATATGTAAAATTCTATGAGCACAGTTGATGTTCTCAAATTCGTTTTCA
AGGGGAATATAACTTTATCGAATACACAGCATCGTTTATAAGAGTTTCTT
GTTGACGGTGACTTTCAATATTATCGAATAAGGGAGTGATTCGAATAATA
AAGTGTCGTTTATAAGAGTTTCTTGTTGACGGCGACTTTCAATATTATTC
TCGAATAAAAGACTGTATCAAATAGTAGNGGAAAGGTTACTTCAACGAGG
CCTAAATCGTCGATGTAGGAATTTTTGCATTGCTAATTACGCCAGCTGAC
AATATGTGTCATGTTGCTTTATAAATCTCATCCATATACTTCTCTACCAT
ATGTAAAATTCTATGAGCACAGTTGATGTTCTCTAATTCGTTTTCAAGGG
GAATATAACTTTATCGAATACATAATAATAATAGCGTCGTTTATTGTTGA
CGGTGACTTTCAATATTATCGAATAAGGGAGCGCTTCAAATAATAAAGTG
TCGTTTGTAAGAGTTTCTTGTTGACGGCGACTTTCAATATTATTCTCGGA
TAAAGGAGTGTATCAAATAGTAGAACGTCGAATTAGAAAGCGTCAACTCT
ACTCCCTATAGAATCAGATCAAATTTATAAAAAGATCTGCTCGTAATTAC
TTGAATTTTCTTGGACTAGATTCGATTTGAATCAGAACGTGGACCATCTT
TCCAAGGAGATCTTGGATTAGACGACATCTTCATAGCAGAAGCGAAATGC
TCAGAGAAACACAATCTCGGGCCGAAAGAAAAGCCGACGACCACCCCAGT
CACCACGACAACAACAACGACAACCACAACGACCACAACAACAAGAGCTC
CAACGACAACCATGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030794XLOC_030794Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048400-exon-scaffold_142-1575043694:856984..857022TCONS_00048400-exon-scaffold_142-1575043694:856984..857022Clytia hemisphaericaexon
TCONS_00048400-exon-scaffold_142-1575043694:856425..856580TCONS_00048400-exon-scaffold_142-1575043694:856425..856580Clytia hemisphaericaexon
TCONS_00048400-exon-scaffold_142-1575043694:855451..855603TCONS_00048400-exon-scaffold_142-1575043694:855451..855603Clytia hemisphaericaexon
TCONS_00048400-exon-scaffold_142-1575043694:854906..854997TCONS_00048400-exon-scaffold_142-1575043694:854906..854997Clytia hemisphaericaexon
TCONS_00048400-exon-scaffold_142-1575043694:853858..854053TCONS_00048400-exon-scaffold_142-1575043694:853858..854053Clytia hemisphaericaexon
TCONS_00048400-exon-scaffold_142-1510915933:856984..857022TCONS_00048400-exon-scaffold_142-1510915933:856984..857022Clytia hemisphaericaexon
TCONS_00048400-exon-scaffold_142-1510915933:856425..856580TCONS_00048400-exon-scaffold_142-1510915933:856425..856580Clytia hemisphaericaexon
TCONS_00048400-exon-scaffold_142-1510915933:855451..855603TCONS_00048400-exon-scaffold_142-1510915933:855451..855603Clytia hemisphaericaexon
TCONS_00048400-exon-scaffold_142-1510915933:854906..854997TCONS_00048400-exon-scaffold_142-1510915933:854906..854997Clytia hemisphaericaexon
TCONS_00048400-exon-scaffold_142-1510915933:853858..854053TCONS_00048400-exon-scaffold_142-1510915933:853858..854053Clytia hemisphaericaexon
TCONS_00048400-exon-scaffold_142-1491911889:856984..857022TCONS_00048400-exon-scaffold_142-1491911889:856984..857022Clytia hemisphaericaexon
TCONS_00048400-exon-scaffold_142-1491911889:856425..856580TCONS_00048400-exon-scaffold_142-1491911889:856425..856580Clytia hemisphaericaexon
TCONS_00048400-exon-scaffold_142-1491911889:855451..855603TCONS_00048400-exon-scaffold_142-1491911889:855451..855603Clytia hemisphaericaexon
TCONS_00048400-exon-scaffold_142-1491911889:854906..854997TCONS_00048400-exon-scaffold_142-1491911889:854906..854997Clytia hemisphaericaexon
TCONS_00048400-exon-scaffold_142-1491911889:853858..854053TCONS_00048400-exon-scaffold_142-1491911889:853858..854053Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_142supercontigscaffold_142:853858..857022 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.404388	0	0	0.423678	0.876079	2.73364	0.0153563	0	1.63086	0.000666894	0	0	0.396461	1.08718	1.00103	5.06098	7.29461e-07	4.2818	0	0	0.965298	1.04067
Blast
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BLAST of TCONS_00048400 vs. Swiss-Prot (Human)
Match: MDGA2 (MAM domain-containing glycosylphosphatidylinositol anchor protein 2 OS=Homo sapiens GN=MDGA2 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 7.016e-20
Identity = 56/183 (30.60%), Postives = 91/183 (49.73%), Query Frame = 3 
Query:   51 CLFDGQGMCFWKDASSSTNYMWKRHKGKTPSGR----TGPNCDHS---TGQSTRDESSSPARTGNKASLISNKIFS---------ATLGRCVTFFYSMHGLGCGAMRLFVVDVG-SGVEHKVWEKTGPQGSAWKEAEVDVPYNTDYKIRFESERGPSFQGDLGLDDIFIAEAKCSEKHNLGPK 548
            C F+   +C +     + N+ W +    T + +    TGPN D S    G     E+S P   G KA L+S  +FS              C +FFY M+G   G + +++   G + +E+ +W  +G +G  W EA V++   T +++ FE  RGP  +GD+ +DD+ IAE +C+ K +L  K
Sbjct:  748 CGFEDGNICLFTQ-DDTDNFDWTKQSTATRNTKYTPNTGPNADRSGSKEGFYMYIETSRPRLEGEKARLLS-PVFSIAPKNPYGPTNTAYCFSFFYHMYGQHIGVLNVYLRLKGQTTIENPLWSSSGNKGQRWNEAHVNIYPITSFQLIFEGIRGPGIEGDIAIDDVSIAEGECA-KQDLATK 927
The following BLAST results are available for this feature:
BLAST of TCONS_00048400 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MDGA27.016e-2030.60MAM domain-containing glycosylphosphatidylinositol... [more]
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