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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048392 ID=TCONS_00048392|Name=TCONS_00048392|organism=Clytia hemisphaerica|type=transcript|length=3216bpRun BLAST on NCBI protein sequence of TCONS_00048392-protein >TCONS_00048392-protein ID=TCONS_00048392-protein|Name=TCONS_00048392-protein|organism=Clytia hemisphaerica|type=polypeptide|length=648bp MEEIDIPKAELREDQIKEDFPLHWMVWYDNTSKLEEALASKLFDHEKKDPRun BLAST on NCBI transcript from alignment at scaffold_142:743694..760003- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00048392 ID=TCONS_00048392|Name=TCONS_00048392|organism=Clytia hemisphaerica|type=transcript|length=16310bp|location=Sequence derived from alignment at scaffold_142:743694..760003- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_142:743694..760003- >TCONS_00048392 ID=TCONS_00048392|Name=TCONS_00048392|organism=Clytia hemisphaerica|type=CDS|length=29205bp|location=Sequence derived from alignment at scaffold_142:743694..760003- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00048392 vs. Swiss-Prot (Human)
Match: AN13B (Ankyrin repeat domain-containing protein 13B OS=Homo sapiens GN=ANKRD13B PE=1 SV=4) HSP 1 Score: 441.81 bits (1135), Expect = 4.536e-141 Identity = 239/523 (45.70%), Postives = 325/523 (62.14%), Query Frame = 3
Query: 279 FPLHWMVWYDNTSKLEEALASKLFDHEKKDPHGRTPLLLAISLGFTETVKTLLAHGCDATSADKEGWNATQEAVGSGDPELLSLVIQHREYQHFTKKSGGITEILEDLEKTDDFYVEMKWEFSSWIPLVSRVCPSDSYKIYKSGNYVRVDTTLKGFEQMNWQRGNQSFIFKAGAKSSDFYEVDHDKKCYWKESIKT--RDENLSLENLVPPTSVISSRFRAPNVTISLDHDNISFARQKSGFPWFGQEKTEKVNGYEAKVFSVSGVEMVTRTRTEHMSEDDLRRLDEEKKRNESQLPSMLNFLKQEESKVEMNTSDIVNESSTNPYGMTVEQYFNPKSH-PSKDVGRLRKMTSKSQKFSATVALSDSFPLSLNEQVLPVINLMANSNSHFAKLRDFITLQLPAGFPIKIEIPLFHVLNARITFGNINGVEKCPDGVIVLEEDAALRPVTERVVSETPDQGXXXXXXXXXXXRCIIDKSIFEVHHKYRDLGTDVNMYRSDSTSYRDEEDELLQLAIQQSLAETS 1838
+PLH++VW++ +LE+ + + D E+ DP GRTPL LA +LG E + LLAHG D ++ GW QEAV + D EL+ LV+++R+YQ K+ GI +LE L K DFYVEMKWEF+SW+PLVS++CPSD+YK++KSG +RVDTTL GF+ M WQRGN+SF+F+ S+ E+DHD++ + E++ +D L L P + SR AP VT LD NISF R K+G + EKTE VNGYEAKV+ S VE++TRTRTEH+SE ++ K ++ L S L +Q + T S NP +T E+YFNP ++D+GR ++T+K+QKF A + L + PLSL EQV P+I+LMA SN+ FAKLRDFITL+LP GFP+KIEIP+FH+LNARITFGN+NG C + V + P +E + S+ S T C I ++FE Y +G R +T RD++D+LLQ AIQQSL E
Sbjct: 16 YPLHYLVWHNRHRELEKEVRAGQVDIEQLDPRGRTPLHLATTLGHLECARVLLAHGADVGRENRSGWTVLQEAVSTRDLELVQLVLRYRDYQRVVKRLAGIPVLLEKLRKAQDFYVEMKWEFTSWVPLVSKICPSDTYKVWKSGQNLRVDTTLLGFDHMTWQRGNRSFVFRGQDTSAVVMEIDHDRRVVYTETLALAGQDRELLLAAAQPTEEQVLSRLTAPVVTTQLDTKNISFERNKTGILGWRSEKTEMVNGYEAKVYGASNVELITRTRTEHLSEQHKGKV----KGCKTPLQSFLGIAEQHGGP-QNGTLITQTLSQANPTAITAEEYFNPNFELGNRDMGRPMELTTKTQKFKAKLWLCEEHPLSLCEQVAPIIDLMAVSNALFAKLRDFITLRLPPGFPVKIEIPIFHILNARITFGNLNG---CDEPVPSVRGS----PSSETPSPGSDSSSVSSSSSTTSCRGCEISPALFEAPRGYSMMGGQ----REAAT--RDDDDDLLQFAIQQSLLEAG 520 The following BLAST results are available for this feature:
BLAST of TCONS_00048392 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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