TCONS_00048384 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048384
Unique NameTCONS_00048384
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1459

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048384 ID=TCONS_00048384|Name=TCONS_00048384|organism=Clytia hemisphaerica|type=transcript|length=1459bp
GATTAAGTGCCTTTTAACCTAATCACTTCTGCGACTTTTGTAAAGCATGG
ACCACAGAATTCTTGGCAAAAAGCAGAAAGTCTCTGTTGTCTGTCTCTCT
ACACAAATGACAAAAGCTTTTACTCTCTTAGTATATCGCCACATCGCAAA
GTCTTGAATCtgATTTTCAATATAGAAAGTTGAGGAAATGGCAGGTACCA
TAGATAACATGATTACAGCTGTCATAAACCTTGTGAAAACAAATGGAATA
GCATCATTGATTATTATTGTGATTGTGATTCATGGTTTCACCTCAAAGAT
TTTAGCATGGGTCAATAAAaaagATGAAAACCGTGCTCAAGGAGGGTCGA
CAGAGAACAACCAGGAGAAGATCACAGATGATACCAATGAACATTTGTTA
TCGCATGGAGGCGAAGATTGTGATATGGTTCCATACAAACAGACCACTTA
CAGTGAAGATGAGATGAAGAAAAGAAGTCAAAGTTTTTATGAAGATATCA
ACCATAGAAGGAGTGTACGATTTTTCAGTGACAAAGATGTACCCATTGAA
GTCATTGAGAACTGTATCAGAACTGCAGGAACTTCACCAAGTGGCGCTCA
CATGCAGCCTTGGACATTTGTTGTTATAAAGCAAGCTGACATCAAAGCAC
AAATCCGCGAAATAATCGAAGAAGAGGAGGAGATCAACTACAAAAAGAGA
ATGTCTGAAACATGGAAAAAAGATCTCAAACGACTTCGCACTAATTGGGA
AAAACCATACCTTGAAACTGCTCCTTATTTAGTTTTGGTTTTCAAGCAAA
CGCATGGTTTAACTGAAGATGGGCAGAAGATTACACATTATTACACTGAA
GAAAGTGTTGGTTTATCTTGTGGTTTATTTCTTGCAGCTGTTCAAAATGC
TGGCCTTGTTACTTTAACGTCAACACCAATGAATGCTGGTCCAAAGATTA
GGATGTTGTTGAACCGTGGCTCGAATGAGAAATTATTCTTATTGTTACCT
GTTGGTTATGCAGCTGACGATTGTAAGGTTCCTGATTTGAAGAGGAAAAG
CTTAGATGAAATTATGGTATTATTTTAGAAATGACATTTTGTagtgttaa
aatattttgtacAACTTGGTATTTATACATATTCTTTTGACTATTTTTCA
TATGATCCCCTTATTACCTCATTCTAGTAGACTGTACATTATGAAatcct
tttgtatttattttaggTTTTGTTCTGTTGGTGCATTAACTAGTCTTGAT
GGTATTTTGTAAAATTCCCAACCCTATTCGATAAATCAGTATGACTGGAA
ATACCATATTTATAACAGTTTCAATATGCTTTATCTTAGGAGGGTTTAGG
AGATATTGTTTTATTTCTTAGGGAGTCTAcctagatttttttgaaaaatt
tctccaGAGATTATCCAAGCTTTTTTGCTTACATAAAGACAGTAAAATTT
ATTAAAGAA
Run BLAST on NCBI

protein sequence of TCONS_00048384-protein

>TCONS_00048384-protein ID=TCONS_00048384-protein|Name=TCONS_00048384-protein|organism=Clytia hemisphaerica|type=polypeptide|length=296bp
MAGTIDNMITAVINLVKTNGIASLIIIVIVIHGFTSKILAWVNKKDENRA
QGGSTENNQEKITDDTNEHLLSHGGEDCDMVPYKQTTYSEDEMKKRSQSF
YEDINHRRSVRFFSDKDVPIEVIENCIRTAGTSPSGAHMQPWTFVVIKQA
DIKAQIREIIEEEEEINYKKRMSETWKKDLKRLRTNWEKPYLETAPYLVL
VFKQTHGLTEDGQKITHYYTEESVGLSCGLFLAAVQNAGLVTLTSTPMNA
GPKIRMLLNRGSNEKLFLLLPVGYAADDCKVPDLKRKSLDEIMVLF
Run BLAST on NCBI

transcript from alignment at scaffold_142:573853..580901-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048384 ID=TCONS_00048384|Name=TCONS_00048384|organism=Clytia hemisphaerica|type=transcript|length=7049bp|location=Sequence derived from alignment at scaffold_142:573853..580901- (Clytia hemisphaerica)
GATTAAGTGCCTTTTAACCTAATCACTTCTGCGACTTTTGTAAAGCATGG
ACCACAGAATTCTTGGCAAAAAGCAGAAAGTCTCTGTTGTCTGTCTCTCT
ACACAAATGACAAAAGCTTTTACTCTCTTAGTATATCGCCACATCGCAAA
GTCTTGAATCTGGTAAACATTTTTTTATGATTTAATATTATCTTCTGTTT
GAAAATCCGTACCTACCACAAATGTCTTTTCTTTTCATTCTCCATATCAT
AGACCTTTTTTCAAAGAGGATGTCCTGTTGAATAATTATGTAGTCTAGCC
ATAAAAACAATGATACAGCCATGCATAATTACTGTATCATGCATATTGTA
ATAATTATGCATGGTTTTATCATTGTTTTTCTGCTGGACGCTGGACTACA
TAATTATTCAACAGGGTGGCCTCTTTGAAAAAAGGTCTATTTGGCAACTC
ACTACACTAACCTCACTATCGATTTTCCCCATGGGAAGTACAAAACGCCT
ACTACCTACACTACTTAATACTTACATACTTACTACCTACTACTTACTAC
CTACTGTAAAATAGCTCAAAACGGCTCGAAATTACCTTTAAAATATTCAG
CATGTTAAAATGAGCAAAATCTGAAACTTTGGTGGTAAAAAAGTTAAAAC
TTCTTCTTTTATCGTACTTTGAAGACTTCAAAATAGTTTCTCTCTTTTAT
TTTGTTTATGACTTTTTCCCGCGCTTTTTCTATAAAGTTTACAGACGCAC
TTCTTTGTAGAAGAGAAAAGTATTTCCTTCGCACACTTTATTCATGTCAG
TTTTATTCATGATGTAATCTTTTCATTGATTGACACTCCGAATCAAAACA
TTTGGCCGCCATTATTGGTGACAAAACTAATGCCTTCCCCAATGTTTTTC
AAGCAAGGACCCCCGGAAAAAATAAAAAAAGATTAATACAGAAGTCCAAA
TACTCCAAATCAAAGAAAAAACTCTTTCATTGAAATTCTTTAAGGCAGGC
ATCACAAATAACTTGTGTTCGCGTCGTCCGACCGGCTGATGATTTTTGCT
AATTTTCCGACTTTTTTGCGTCGGAAAGTCGGAAAAACGTCGGATTTTTA
TAAGTATAATATAGTCCCAGCTTTATCCCACTTTTAGTGAACCTTCCTAT
ACCTTTTGTCCTTCAGAAAANTTGAACCACTATTATCGTTTGTCTTTGAA
TTTGTCTTGGAAGTGTGCTGGAAACAGAATGGAGACTTAATTAGCCTGCT
TTTTTGACTGAATCATAAGTCACCAAGTCAATTCAAGGTAAGTGTAACTT
TTATTACTTTTATTATTTAGTAACCTATTATTTCTTCGACGGTTAAGTTT
GGTTAAGCTGGCCGATATTCCTGGTCTTGACTCTTCTGATTGGACATCCT
CTGTGCTGAACAACTGAAATTGTTGAGAAAAAAATTGTCATAAATAATGG
GTGGTTCAAGTTATAGTCGGTTACCCCCCTGTGGACGACATGGATTTTCC
GTAACAATTTACTTTTGAAAAACTTAAGCATTTTCTTAACATTCAAGATT
TTTTATGGGAAAATCCATGATACTTGGCAAGAAAATAAAGCAAATCTTAT
GGACTTTTCGATACATATGACTAAATAATTAGGAAAAGTCCTGGATTTTC
CGAAACCTTTTTCAAATTTATCAGGATTTCCAAGTGAAAAAAAATCCAAA
AAACCCAGTCGTCCATAGCGGGTAATGGTTTTTTTCTGGAACTGCCCCTA
CTATATACTCTTCATTAGTATAAAAAACCTTATTGCCAGACGATCTCAAT
TGAACGGACTCGACGATCGAACGTAATCGACCGATTGAAATTTTGACGTT
CGATTGAGATTTGAGATATTTGACTTTTTAATCTCTAAAAATGAGTCTTT
ACACAGCTGTACAGTCTTTACTTTGAATTTCTTTTGTTATCAAGTAAAGT
TTTTGAAAATCAAAGTCAAATTTCCCGGTTTAGGAAAAAAAACTTTGGAG
GTGTTTCTTAAGACCATAAGGCGGGTATCACAAATAACTTGTGTTCGCGT
CGTCCGACCGACTGATGATTTTTTCTAATTTTCCGACTCTTTTGAGTCGG
AAAAACGTCGGATTTTTTTAAGTATAATATACTCCCAGCTTTTATCCCAC
TTTTAGTGAACCTTCCTATACCTTTTGTCCTTCAGAAAAGCAAAAAACAT
TAGCCTTAATCCTTTGCTTGCAGCTCCTGTAGCCAGTAGTGTGGCCCCCT
GTATTATTCATTTAATTCTCCCTCGTGGTTTTTCAATTAGAGATAGCACT
TTTCTCGCCGCCATCTTGAATTTATGTCACTTTCGCTTTCTCTAGTCCAA
TAAGACACGGCAATTTGAGTCACGTGAGTCAAATCGCGTGTCTTATTGGA
CTAGAGAAAGTGAAAGTGAAATCGCACGATCTAATTGGATGAAAAAAATA
TTGTGTGAACTGGGGCTGAATATAATTCTTATTTTAAATTCAAGATGGCG
GCAAGAAAAGTACGTCTTTTTGCTTTGGAAAAAATGTTGTAAATTCTGGT
TGATTTTAAGGTTTTTTCCTCTCTTCTCTCATTTACTTTGATCAGTATAG
GCTTCTTCAATGTTTTGGGAAGGTAAGTTTATAAAAGTTATTTGTTTTTC
GGTGTGACTCTAGCGTAGCTTTTCAAATTCCCGATAGATTTGATTTTTGC
CCGACTCATGGTTTGGAAATCTATTTTTCCGACGTTTTTTTTGCCGACCG
ACCGACCGACTCGTTTTTTAGACCTAAAAACGACGCGAACACAAGTTATT
TGTGATGCCCGCCTAATCATCTTCAATAGATTTCCAAAAGATATTTAATT
CTATTATATTACGTCAGAAGATATTAAGCTTTCTTTTTCGGTTTCAATAC
AAAATATGTTAGCGGGACAATTTTTTTGCCACCAATAATGGCGGCAAAGT
TGTTACGTCACATCTATTGTTTAGGCGCAAAGATTACATCATGAATATCA
TGAATTTATAAGAATCGATCAATCTAAAAAGTTAAAATACTTTAAGTAAG
TAGAGCCCTATGTTTCACTGGATACTTGCTGAAAATCCTTTGACATGTCT
TTGACATTTATTGACAAAATGACCCTTTTGAACCAAACTATTGACAGGGT
CGTTGAATATGACCTTTGTAGACTTCATTTTATGTAGCAAAAATTCTTAT
TGTGCTCAATAAGATGCTTTCAGTATCGCAAGGTAGAAATTTTCAGTAGG
AAAATACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTCAGATATTACAAAA
CCAATTTTTTTAGAATAGAGATTTCGAACAAGCGAAGGAGAGTTCTGGTC
TGTAAAGTATACAAACTGAGTAGGTAGTAAGTAGTAAGCAGTAGGTAGTA
AGTATTAAGTAGTAGGTAGTAGGCGTTTTGTACTTGCCGCATTTCCAACG
CAAAAGGGCTAGTTTTCCAAGGAGGAGTCTCAATTTCACAAAAATGTAAT
TTCCACGTATGAATTTTTTACGTTTTCCAAATTGTTTGGAGAAACACACA
TTTTCAATGCAAAAAGACTTAATTTTCAAAAAAAGCTCTTTGATCAATGC
GCTACCTTAATTCAAAAGGGGCCTAAGTCCAGGTACCCCCCAGTTCAAAA
GGGGCCTAAGTCCATTTTTATGAAATTTGAGATCTTTAGTTTTTCTCAAT
CTCTGGCTCATTTGCTCTCTTTTGATGTACATAACAAGTAGTTTTTGAAG
TTAAAACGGTTCAAAACTTCATACTGAAGCTCTGATAAAAGTGATGTTTA
ATTCAAAAGAGGCCTAAGTCCATCATCTTTTTACAATTAAGGGCCTAAGT
CCATCAACNGTGTTGATCAGATTTTCAATATAGAAAGTTGAGGAAATGGC
AGGTACCATAGATAACATGATTACAGCTGTCATAAACCTTGTGAAAACAA
ATGGAATAGCATCATTGATTATTATTGTGATTGTGATTCATGGTTTCACC
TCAAAGATTTTAGCATGGGTCAATAAAAAAGGTATATAATAAAATCATAT
TATGTAAATTAAGACATATGATAGAAGTGCTGGCCACCATGGAAGTATTT
TCCCAGGAAATCCTTTATTGCAAATTTAAAAATAAAAAAAGGGGTAACTC
AAAATTGGGGGAACTCAAAATTGGGGGGTTACTTTTGAATTCTAAAAATT
TTTCGGGTACCAAATTGATTGGGGGTACCTAAATTTTTTGGGGGTACCTG
AACCCTATGATGACATTATAAAGATACATCAAGGCAAATGTATCTTACAT
CTTTCAAGAGGTACTTTATATGTTTTTAAATTGTTGCATTTAAAAGAAAT
GTCTCTAATTCATTCTTAACCAAAAAACTTTTATGTTTGCTGCCAATTAA
AAGTGTGTTTCCATAATCTAGTATTGCATTTGGGTTCTGCTTAAAATGAT
TTTTTATCATAATACATGAGAAATTCCTTCTGCAATTCATCATGAATCAA
TTATGAAGGCTTCTGTTAAATTATTTCTCATCCAAGATGAAAACCGTGCT
CAAGGAGGGTCGACAGAGAACAACCAGGAGAAGATCACAGATGATACCAA
TGAACATTTGTTATCGCATGGAGGCGAAGATTGTGATATGGTTCCATACA
AACAGACCACTTACAGTGAAGATGAGATGAAGAAAAGAAGTCAAAGTTTT
TATGAAGATATCAACCATAGAAGGAGTGTACGATTTTTCAGTGACAAAGA
TGTACCCATTGAAGTCATTGAGAACTGTATCAGAACTGCAGGTGAAAGTG
CTGTTGTTTATGAAGCAATTTTTGGGTTTGGGTTTTATTTACTATGAATT
GAGACAGTGAAAACAGAGAATTTAAATGTGCAAATAGATCTATTTGTTTT
TCAATGGGTTTTAGAAATGAGTAACATATTGGGACAATGTTTCAAATCAA
AAATAAATGTTTTCACCATGCAGAAAAATAAGGATGATCTTATTGGAAAG
TGTATGATATATGATTATGTCATGATAAGTCTCCCTAAGTAAGTAACATA
AGTAGTTTCGTTCTACTCATTTTAGGAACTTCACCAAGTGGCGCTCACAT
GCAGCCTTGGACATTTGTTGTTATAAAGCAAGCTGACATCAAAGGTGAAC
ACTTTATTGTAAATTTGATAAAACTAATTTCTACTCTATAGATATTTTAT
GTTTTAATGTTTTAATCTATTATCAGATGTCCATCAGGTAGGCATTCTAA
TTCGCATTGGCATTTGGCTATTGCCGACACAAATGCCAATTTAAATTTGG
CTTTTGCTGACGTGAAATGTGCTTACTGTAAATAGAAGCCATAATTATTT
ACTAACACAAATAAATCTGAATTAGAAAGGCTGCTTAGGTCTGTTTTTAT
GGAACAACACTAGGTTTCATTATCAAGAAAATGTTTGGTTGTGTCGATGG
TACTCCTAAAACTTCACCCTTTTTGAATTTAGGTGTTTGGCAACGAAAGC
AATATGCAAGTGAAATCCAAATTAATGTATATAATGTAAATTAATCACAT
TCCTCATAAATTTTAGGTATGTGTGGACGTGTGGACCTAGTTTATTATTG
TCAATAGGAAAAATTAATTGTATAGATAATCATAACATTATACTCTTAGT
TACTTTTTACTTTTATATTGGCTTTTGTTATTTGCAGCACAAATCCGCGA
AATAATCGAAGAAGAGGAGGAGATCAACTACAAAAAGAGAATGTCTGAAA
CATGGAAAAAAGATCTCAAACGACTTCGCACTAATTGGGAAAAACCATAC
CTTGAAACTGCTCCTTATTTAGTTTTGGTTTTCAAGCAAACGCATGGTTT
AACTGAAGATGGGCAGAAGATTACACATTATTACACTGAAGAAAGTGTTG
GTTTATCTTGTGGTTTATTTCTTGCAGCTGTTCAAAATGCTGGCCTTGTT
ACTTTAACGTCAACACCAATGAATGCTGGTCCAAAGATTAGGATGTTGTT
GAACCGTGGCTCGAATGAGAAATTATTCTTATTGTTACCTGTTGGTTATG
CAGCTGACGATTGTAAGGTTCCTGATTTGAAGAGGAAAAGCTTAGATGAA
ATTATGGTATTATTTTAGAAATGACATTTTGTAGTGTTAAAATATTTTGT
ACAACTTGGTATTTATACATATTCTTTTGACTATTTTTCATATGATCCCC
TTATTACCTCATTCTAGTAGACTGTACATTATGAAATCCTTTTGTATTTA
TTTTAGGTTTTGTTCTGTTGGTGCATTAACTAGTCTTGATGGTATTTTGT
AAAATTCCCAACCCTATTCGATAAATCAGTATGACTGGAAATACCATATT
TATAACAGTTTCAATATGCTTTATCTTAGGAGGGTTTAGGAGATATTGTT
TTATTTCTTAGGGAGTCTACCTAGATTTTTTTGAAAAATTTCTCCAGAGA
TTATCCAAGCTTTTTTGCTTACATAAAGACAGTAAAATTTATTAAAGAA

Coding sequence (CDS) from alignment at scaffold_142:573853..580901-

>TCONS_00048384 ID=TCONS_00048384|Name=TCONS_00048384|organism=Clytia hemisphaerica|type=CDS|length=3564bp|location=Sequence derived from alignment at scaffold_142:573853..580901- (Clytia hemisphaerica)
CACAAATCCGCGAAATAATCGAAGAAGAGGAGGAGATCAACTACAAAAAG
AGAATGTCTGAAACATGGAAAAAAGATCTCAAACGACTTCGCACTAATTG
GGAAAAACCATACCTTGAAACTGCTCCTTATTTAGTTTTGGTTTTCAAGC
AAACGCATGGTTTAACTGAAGATGGGCAGAAGATTACACATTATTACACT
GAAGAAAGTGTTGGTTTATCTTGTGGTTTATTTCTTGCAGCTGTTCAAAA
TGCTGGCCTTGTTACTTTAACGTCAACACCAATGAATGCTGGTCCAAAGA
TTAGGATGTTGTTGAACCGTGGCTCGAATGAGAAATTATTCTTATTGTTA
CCTGTTGGTTATGCAGCTGACGATTGTAAGGTTCCTGATTTGAAGAGGAA
AAGCTTAGATGAAATTATGGTATTATTTTAGGAACTTCACCAAGTGGCGC
TCACATGCAGCCTTGGACATTTGTTGTTATAAAGCAAGCTGACATCAAAG
ATGAAAACCGTGCTCAAGGAGGGTCGACAGAGAACAACCAGGAGAAGATC
ACAGATGATACCAATGAACATTTGTTATCGCATGGAGGCGAAGATTGTGA
TATGGTTCCATACAAACAGACCACTTACAGTGAAGATGAGATGAAGAAAA
GAAGTCAAAGTTTTTATGAAGATATCAACCATAGAAGGAGTGTACGATTT
TTCAGTGACAAAGATGTACCCATTGAAGTCATTGAGAACTGTATCAGAAC
TGCAGATGGCAGGTACCATAGATAACATGATTACAGCTGTCATAAACCTT
GTGAAAACAAATGGAATAGCATCATTGATTATTATTGTGATTGTGATTCA
TGGTTTCACCTCAAAGATTTTAGCATGGGTCAATAAAAAAGCACAAATCC
GCGAAATAATCGAAGAAGAGGAGGAGATCAACTACAAAAAGAGAATGTCT
GAAACATGGAAAAAAGATCTCAAACGACTTCGCACTAATTGGGAAAAACC
ATACCTTGAAACTGCTCCTTATTTAGTTTTGGTTTTCAAGCAAACGCATG
GTTTAACTGAAGATGGGCAGAAGATTACACATTATTACACTGAAGAAAGT
GTTGGTTTATCTTGTGGTTTATTTCTTGCAGCTGTTCAAAATGCTGGCCT
TGTTACTTTAACGTCAACACCAATGAATGCTGGTCCAAAGATTAGGATGT
TGTTGAACCGTGGCTCGAATGAGAAATTATTCTTATTGTTACCTGTTGGT
TATGCAGCTGACGATTGTAAGGTTCCTGATTTGAAGAGGAAAAGCTTAGA
TGAAATTATGGTATTATTTTAGGAACTTCACCAAGTGGCGCTCACATGCA
GCCTTGGACATTTGTTGTTATAAAGCAAGCTGACATCAAAGATGAAAACC
GTGCTCAAGGAGGGTCGACAGAGAACAACCAGGAGAAGATCACAGATGAT
ACCAATGAACATTTGTTATCGCATGGAGGCGAAGATTGTGATATGGTTCC
ATACAAACAGACCACTTACAGTGAAGATGAGATGAAGAAAAGAAGTCAAA
GTTTTTATGAAGATATCAACCATAGAAGGAGTGTACGATTTTTCAGTGAC
AAAGATGTACCCATTGAAGTCATTGAGAACTGTATCAGAACTGCAGATGG
CAGGTACCATAGATAACATGATTACAGCTGTCATAAACCTTGTGAAAACA
AATGGAATAGCATCATTGATTATTATTGTGATTGTGATTCATGGTTTCAC
CTCAAAGATTTTAGCATGGGTCAATAAAAAAGCACAAATCCGCGAAATAA
TCGAAGAAGAGGAGGAGATCAACTACAAAAAGAGAATGTCTGAAACATGG
AAAAAAGATCTCAAACGACTTCGCACTAATTGGGAAAAACCATACCTTGA
AACTGCTCCTTATTTAGTTTTGGTTTTCAAGCAAACGCATGGTTTAACTG
AAGATGGGCAGAAGATTACACATTATTACACTGAAGAAAGTGTTGGTTTA
TCTTGTGGTTTATTTCTTGCAGCTGTTCAAAATGCTGGCCTTGTTACTTT
AACGTCAACACCAATGAATGCTGGTCCAAAGATTAGGATGTTGTTGAACC
GTGGCTCGAATGAGAAATTATTCTTATTGTTACCTGTTGGTTATGCAGCT
GACGATTGTAAGGTTCCTGATTTGAAGAGGAAAAGCTTAGATGAAATTAT
GGTATTATTTTAGGAACTTCACCAAGTGGCGCTCACATGCAGCCTTGGAC
ATTTGTTGTTATAAAGCAAGCTGACATCAAAGATGAAAACCGTGCTCAAG
GAGGGTCGACAGAGAACAACCAGGAGAAGATCACAGATGATACCAATGAA
CATTTGTTATCGCATGGAGGCGAAGATTGTGATATGGTTCCATACAAACA
GACCACTTACAGTGAAGATGAGATGAAGAAAAGAAGTCAAAGTTTTTATG
AAGATATCAACCATAGAAGGAGTGTACGATTTTTCAGTGACAAAGATGTA
CCCATTGAAGTCATTGAGAACTGTATCAGAACTGCAGATGGCAGGTACCA
TAGATAACATGATTACAGCTGTCATAAACCTTGTGAAAACAAATGGAATA
GCATCATTGATTATTATTGTGATTGTGATTCATGGTTTCACCTCAAAGAT
TTTAGCATGGGTCAATAAAAAAGCACAAATCCGCGAAATAATCGAAGAAG
AGGAGGAGATCAACTACAAAAAGAGAATGTCTGAAACATGGAAAAAAGAT
CTCAAACGACTTCGCACTAATTGGGAAAAACCATACCTTGAAACTGCTCC
TTATTTAGTTTTGGTTTTCAAGCAAACGCATGGTTTAACTGAAGATGGGC
AGAAGATTACACATTATTACACTGAAGAAAGTGTTGGTTTATCTTGTGGT
TTATTTCTTGCAGCTGTTCAAAATGCTGGCCTTGTTACTTTAACGTCAAC
ACCAATGAATGCTGGTCCAAAGATTAGGATGTTGTTGAACCGTGGCTCGA
ATGAGAAATTATTCTTATTGTTACCTGTTGGTTATGCAGCTGACGATTGT
AAGGTTCCTGATTTGAAGAGGAAAAGCTTAGATGAAATTATGGTATTATT
TTAGGAACTTCACCAAGTGGCGCTCACATGCAGCCTTGGACATTTGTTGT
TATAAAGCAAGCTGACATCAAAGATGAAAACCGTGCTCAAGGAGGGTCGA
CAGAGAACAACCAGGAGAAGATCACAGATGATACCAATGAACATTTGTTA
TCGCATGGAGGCGAAGATTGTGATATGGTTCCATACAAACAGACCACTTA
CAGTGAAGATGAGATGAAGAAAAGAAGTCAAAGTTTTTATGAAGATATCA
ACCATAGAAGGAGTGTACGATTTTTCAGTGACAAAGATGTACCCATTGAA
GTCATTGAGAACTGTATCAGAACTGCAGATGGCAGGTACCATAGATAACA
TGATTACAGCTGTCATAAACCTTGTGAAAACAAATGGAATAGCATCATTG
ATTATTATTGTGATTGTGATTCATGGTTTCACCTCAAAGATTTTAGCATG
GGTCAATAAAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030781XLOC_030781Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048384-exon-scaffold_142-1575043694:580740..580901TCONS_00048384-exon-scaffold_142-1575043694:580740..580901Clytia hemisphaericaexon
TCONS_00048384-exon-scaffold_142-1575043694:576321..576481TCONS_00048384-exon-scaffold_142-1575043694:576321..576481Clytia hemisphaericaexon
TCONS_00048384-exon-scaffold_142-1575043694:575561..575815TCONS_00048384-exon-scaffold_142-1575043694:575561..575815Clytia hemisphaericaexon
TCONS_00048384-exon-scaffold_142-1575043694:575208..575276TCONS_00048384-exon-scaffold_142-1575043694:575208..575276Clytia hemisphaericaexon
TCONS_00048384-exon-scaffold_142-1575043694:573853..574664TCONS_00048384-exon-scaffold_142-1575043694:573853..574664Clytia hemisphaericaexon
TCONS_00048384-exon-scaffold_142-1510915933:580740..580901TCONS_00048384-exon-scaffold_142-1510915933:580740..580901Clytia hemisphaericaexon
TCONS_00048384-exon-scaffold_142-1510915933:576321..576481TCONS_00048384-exon-scaffold_142-1510915933:576321..576481Clytia hemisphaericaexon
TCONS_00048384-exon-scaffold_142-1510915933:575561..575815TCONS_00048384-exon-scaffold_142-1510915933:575561..575815Clytia hemisphaericaexon
TCONS_00048384-exon-scaffold_142-1510915933:575208..575276TCONS_00048384-exon-scaffold_142-1510915933:575208..575276Clytia hemisphaericaexon
TCONS_00048384-exon-scaffold_142-1510915933:573853..574664TCONS_00048384-exon-scaffold_142-1510915933:573853..574664Clytia hemisphaericaexon
TCONS_00048384-exon-scaffold_142-1491911889:580740..580901TCONS_00048384-exon-scaffold_142-1491911889:580740..580901Clytia hemisphaericaexon
TCONS_00048384-exon-scaffold_142-1491911889:576321..576481TCONS_00048384-exon-scaffold_142-1491911889:576321..576481Clytia hemisphaericaexon
TCONS_00048384-exon-scaffold_142-1491911889:575561..575815TCONS_00048384-exon-scaffold_142-1491911889:575561..575815Clytia hemisphaericaexon
TCONS_00048384-exon-scaffold_142-1491911889:575208..575276TCONS_00048384-exon-scaffold_142-1491911889:575208..575276Clytia hemisphaericaexon
TCONS_00048384-exon-scaffold_142-1491911889:573853..574664TCONS_00048384-exon-scaffold_142-1491911889:573853..574664Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048384-proteinTCONS_00048384-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_142supercontigscaffold_142:573853..580901 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
87.9231	91.2334	47.0739	39.8693	15.4428	10.4715	17.3133	20.6507	19.6412	19.4438	15.9392	11.2163	15.5139	15.6942	17.4298	19.3095	28.8465	24.5517	8.99479	11.5617	14.3879	14.716	44.2122	37.3344	16.2282	14.3853	10.3723	7.75599	20.3504	24.6166
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029479Nitroreductase
IPR000415Nitroreductase-like
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016491 oxidoreductase activity
Blast
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BLAST of TCONS_00048384 vs. Swiss-Prot (Human)
Match: IYD1 (Iodotyrosine deiodinase 1 OS=Homo sapiens GN=IYD PE=1 SV=2)

HSP 1 Score: 283.108 bits (723), Expect = 4.197e-91
Identity = 142/258 (55.04%), Postives = 184/258 (71.32%), Query Frame = 2 
Query:  317 KKDENRAQGGSTENNQEKITDDTNEHLLSHGG-------EDCDMVPYKQTTYSEDEMKKRSQSFYEDINHRRSVRFFSDKDVPIEVIENCIRTAGTSPSGAHMQPWTFVVIKQADIKAQIRXXXXXXXXXNYKKRMSETWKKDLKRLRTNWEKPYLETAPYLVLVFKQTHGLTEDGQKITHYYTEESVGLSCGLFLAAVQNAGLVTLTSTPMNAGPKIRMLLNRGSNEKLFLLLPVGYAADDCKVPDLKRKSLDEIMV 1069
            KK E R +  +     E + D ++ H             E+ + +P+    Y E EM KRSQ FYE +N RRSVRF S++ VP+EVI+N IRTAGT+PSGAH +PWTFVV+K  D+K +IR+IIEEEEEINY KRM   W  DLK+LRTNW K YL+TAP L+L+FKQ HG   +G+K  HYY E SV ++CG+ LAA+QNAGLVT+T+TP+N GP++R+LL R ++EKL +LLPVGY + +  VPDLKRK LD+IMV
Sbjct:   30 KKGEPRTRAEARPWVDEDLKDSSDLHQAEEDADEWQESEENVEHIPFSHNHYPEKEMVKRSQEFYELLNKRRSVRFISNEQVPMEVIDNVIRTAGTAPSGAHTEPWTFVVVKDPDVKHKIRKIIEEEEEINYMKRMGHRWVTDLKKLRTNWIKEYLDTAPILILIFKQVHGFAANGKKKVHYYNEISVSIACGILLAALQNAGLVTVTTTPLNCGPRLRVLLGRPAHEKLLMLLPVGYPSKEATVPDLKRKPLDQIMV 287
The following BLAST results are available for this feature:
BLAST of TCONS_00048384 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IYD14.197e-9155.04Iodotyrosine deiodinase 1 OS=Homo sapiens GN=IYD P... [more]
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