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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048382 ID=TCONS_00048382|Name=TCONS_00048382|organism=Clytia hemisphaerica|type=transcript|length=1003bp
AAGACGAGCAGCAATATAAAGGAGGACATGAATAGAATGTCACTTTACCA
GAGCTGTTAGCTAATCCCCAGTAATTTCCTTTGCTTCGAATATTGCCGTC
TTTGCAAGAGGCTTGGTAGGGGCATAAATGGCAGTTAATGTTATGGACTG
TTATGTTATCAGCTCTTTCATTGCCTGTTATAAAAGCATGACCGTTTGCG
TTATAAGATGAACTATTACAGGTGATGCAGTGTAGTCTCAAATATTGGTA
GCTCTCAAACTCTTCGTAGATGTAACTTCCTTCAAAGCAATTCAATTTTG
AGGTCTTTGTGATTTCAAGCCATCCTGTTGGATAGCTATAAATACTTGGC
TCAATCCAAATGCTCCTGATATCATTAAACAAGGGGCTCCTAATAGAATT
AACAACGGTGTTAACGATTGAAACTGAAGTATATGGTCTTTCACCGGTCC
CTAGCTTGGTAAAAATAGATCCAGCTTGATTAGAACGGGCTGAATTATTG
TTGAAGGTACAATTGACTAAATCCATGTCAGTTGAGCGTGTTGTCAAGGC
TGCAGCTCTGTCAGTTGGTATCATTGGTTGATCACTTATGTAGTTATCTG
CGAATGTCAGATTGATCAATTCTACACTCCCACGTTCTAATTTGACTGCA
CCGTAAGATGCTCTCTTGAAAGTGCAATCTCGGATTGTTCCTTCCCAATA
ATTAGTATCACCAGGGTGAACTTGTAGCATGAATGCATAATCTCCTTCTT
GATCCCCATACTCTGACGAACCTTGAAATGTACAATTGGTTACACTGAGT
CTGCCATATTCAATTGTAGTCTCTACCGATGATCGAAAAAACTGACTCTG
GTGTAATTGAAGATCTTTTATTGGATTAGATGAAAGTAAGGAATCAATGA
GTATTGATCTATTAACTGTTATTCTTTGGAAGGTGATGGCCATTATCTGA
TTAACAAAATGACaatcatcaaaagttatgcttgCATGGTAGTCAATACT
AGT Run BLAST on NCBI transcript from alignment at scaffold_142:552586..559643- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048382 ID=TCONS_00048382|Name=TCONS_00048382|organism=Clytia hemisphaerica|type=transcript|length=7058bp|location=Sequence derived from alignment at scaffold_142:552586..559643- (Clytia hemisphaerica)
AAGACGAGCAGCAATATAAAGGAGGACATGAATAGAATGTCACTTTACCA
GAGCTGTTAGCTAATCCCCAGTAATTTCCTTTGCTTCGAATATTGCCGTC
TTTGCAAGAGGCTTGGTAGGGGCAAATGTAACAAATAATGTTATGTCCAT
CCAGTGATTGCTCTTCGGTATCATTGACTCTGATGAAGGACACGTCATTC
GCGTTGTAGGATGAACTATTACACTTAAGACAATCAATTCTGAAGTAAGT
ACATAGTACGTAAGTACAAGTATAGTGATGATTCATATATTTCGCGATTG
GGCATGACATTTTGGATGAATTATCAATGGAAACCCAGGAAAACTGACGG
CGGTAATCATCAGATTCAAAAACAACACTTGTGTCTCCTGTCGACATGTG
ATATTTTCCCGACTCGATTGTTGTATTTAGAATTTGAAGACTGGACTTGG
AATCTTGTGTATAATGTATATTGGTTTTGAGGGCGCCAATACGGCCCAGT
GGAGCTGAATTATTTTTGAACGTACAGTTTACAATTTTGTATGTAATATA
GTGTGAATTGTACGCCATTAAAGCGGCCGCGCGGTATGCTTGCGTGTATT
GTTCTTCGATGTAACAGTCCCTGAACTCGGAATTTCGGATCGTCAACGAC
ATTGCCTTGATGAGTGCTGCTCCAAACAAGGCACTTTTAAATATACAATT
GTCTATGGTGACACTTTTAGCTTCGGTTATGTCTAGCATAAAATGACTCA
TATCGATATCAACTTGCTTTGAGTAAGATCCTTGGAAGTGACAATTCTCC
AAGTGAATATTCGAATCTGTCAAGTGCCATTCGGGTACTCCTTGGATAAT
TAAAGCTGAATGTTGAAATCGATTTCGAATGAATTTGAACTTGCCTTTAG
AGAAGTACATTGTAAAAACTGTATCCTTGAAGTTTGTGTCAATGATTCTC
ATCGTGGCGAGTTGGTAAAAGTTTAAAGTGTAATTGATAAAAAGACAACT
TTCAATATGGATCTTTTGTTATCTTATCCAGTTTTGACGATTGTCTGTAT
TGTGAGATCTTATGATTGGTGGTAGCTCTTTGACTATTGGATTAATAAAC
TCTCTGAAGCTTTTTCGACCAGGACCTCGAAAAGTTGTGTTGTAAAAGAA
TACGTCGATATCTTGGACATGATCGAAAAGTTGTATCATTTGGTATTTTG
TGTTCAATTGTAAAATACATGTATTGTATCTGATTGAGATTCCATCTTTC
AAAACTTTGAATACTGGGAGGAGGAAGATTGTCGAATTGTAAACGATTTT
GAGACCATTTAATGTGATATTGTTATGCAACTCTATGAGATTATTTTCTT
TAAGTGAATCTGAAAAATGAATGATTGTATTTTTTCGGCTTTTGTTCGTG
CTGTGTGTCGTTAATGTAAGCTACACCTATATTCTAAACAAATCATTGAC
CGTTGACACCTTCACTTGCTTCGTTCTGTGAAACGTAAATCTCTCGCGAT
GATAATCCTACGAAAATTGGAAAATGAAGTTAACAACTCGCGTTGTAAAG
ACCTCGTATTATACAGTGTGTCCCAAAAGAAGCGGACAAATTTCTATGTA
AAGTAAAATCCTCAAAACTCATCATCTTTAAACTGAGCTTAAAATAATTG
AAATAAAATTAAAATTTCTCTGAATAGTTTGGAAAAATGTATATTGGAAA
AAACTATTTACCTTTGTATATCGCGCATAATAACAATAAAATGAAAGCGA
AATTGAATCTCATTGTTTTAGTTTGTTTACACGCTTTTTTTTTTATAAGA
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATACCGTAAGAAT
ATTTTTGGATGATTTTCGCCAAAAAGTTAAGAATATCCATGATGGAATGA
AAATACACCATTCTTATAAAAAAAAAAAGCGTGTATACTGTAATCTGTTT
TCTCCCGACAAATTATAATGATTTTACGTCAATCTACTTTATAACATTGG
TGAACCAGTAATGAAAGGTTTTTGATTGAAAAGCTGAAATAATCATTTCT
AAATCATTTCTTTCCAATTAAAGGCAACTAAAAGCAATAGTCGTTAGCCC
TATACTTACCTTCGAATGTACTCGTCAAAATTAACATCTCATTATTTACA
ATAGAAAAAAGCTGTAAAGAGTTAATATCAGAATTCCCTCCTTTTGGATT
TCTTTATCATAAGAAGCATCACTGTAAAGCTCTTTTCAAATTATTTGTTG
AATTAAAGTTGATAAAATGTCAAAGTTTAAATACACGTTTTCTTAAAAAC
CTTTGAAGTCTTTGGATGCTCTTTAACTTTTTGAGTTTAAATCCTAAAAT
ATTCTTGAATTGTTTTTATTTTCACCATTTTGTGTTTTTGTGCAGTTCCA
AAGAAATCGGGAGCCCGAGAAGGCTTAAAATGTTCTTAACTTGTTCTTGA
TATTTTGGCTATCGAAACATTATGTTTTTGTGGTATATTTTGTTCTTATA
CAAAGAACATACGAAGAGCATTTCAATTCTGTGCTCGTCGAAAATAATGA
CCGCAAATGCAAGTGGAATATTACACTGTTTTTTATAATAACAAACCATG
TAAGAACATAAGGCTTCGATTGCGAAGACTGTATTGAGAGCAAAATAAAG
ATATATTTTCATGATATAGAAAACAGACGCGCTTCTATGCTGACAAAGTA
GAACAAACAAAAATTCTAAAAAATTTTCTCGCTCGCGTGCCTCCGAAAGG
AGAGAAAGTTTTTTCTTTTGATTTAGAATGTTGTGTAAGTGTAAATGATA
GGAGATACTGCCTATGGTATCCTTTGAGAACATTTTGATGCTTTGCGGAC
TCTAAAACACGCAATTTTTGAATAAAAATACTCACAAAATGGTCAAGATG
AGAAAAAGTTAAATAATAACATCCGAAGGCTTCCAAAATTCTAGATGCTC
TTATAAAGTCAAATTTAAAAGTCAATAATATCTTAAGATCTAGCAATGGA
AACCCTATAAACTATACCTCTAATCGAGAGAATACTCTTTGAGATGCTTT
TTTTTTTCGTTAAAAGTTCTCTCAAAAATGTTGACGGTAGTATATTAAAA
TATTTACAGTTTTGAAGGCGTATCTGTCATTTTCGAGGAATTAAGTCCAC
CAAATTAGACAAATTTTCCAATTTTCCAAACTTTTTACAAATAAATTTTA
CAGGATTATAATATCGATTCGTTGTTATAAGAAAAACTAGACTAGCTCAA
ATAAAAATCCTAAATCATACTATTATTGTACTATATTTAATTCTGAATAA
AGTGAACAATTATTATAAAGATTAAATTAATCAATCCTTCCATACATCAT
TCTTGAGCAACAGATTTGATAGCAAAATTTTGTTGTAATGAAAATTAGCT
ATCTGCAAAATGTACACGTTTAAAAGAAATTTGAAATAAAAGAGGCTACA
CGTTTTTTTTTTATAAGAACGTCAAAAATTTTCGAAGCCTTCGGATGTTC
TTATTTTTTTGGATTTGAAGCCTAAAAATGTTCTTAAAATGTTCTTATTT
TCAGCATTTTTTGAGCATTTTGATGTAATTTCTTTTAAGAAATTGCATGT
TTTTAAGTCTCCAAAGCCTTAGTATGTTCTTAGAATGTTCTTAAATTTCT
GGGCCTCGAAGCCTCATGTTCTTATATAGTTTGTTCTTATAAAAAAAAAC
GTGTAATTACCTATCAAAAAATTCTCTGAAAATAATTTCAAAATTACTTA
AAAATCCCTAAAATTTCCTTCAGATTCCCTTTATCCCGTAAAGATGTCTA
AAATCTCAAAAGTTTCAAGATAATACTAGAGACAGATCTCCAGAAGGATT
TCAAAAATCACGAAAAGCTTACGTGTTTTATTCTTCCATCCTGATTCCAC
AAAATCTGGTCATGATATTTTCCTGAAGTCAGTATACAATTATAATTTTC
ACACAATCATATAGATTCGAATAATTCTAAATGCTAAATCACATTTTATA
TTGGATTATGTAATGGTTTTTTCAAACCCCCTTCTTCAAGATTTATTAGA
TAACAACAATCACTCTTTGTACTTCATATAATATACTTTTTTATAAGAGG
ATAAATTTTCGCGTGGGCATTTTTTTTTAGCGAAGTGAGAATCTAAAAAT
TTCGCATTAATGAAATTTCACAAATCAGCCTCTTTTCATTTAATTTCTGT
CATTTGCCTACGCTTTTTTTGCGAAAATCCTTATTCTAGATTTTTTTCGT
GAGGAGTAAATTTCATGAAAACGGCAAAAATTCGTGAAAATTGCAAAAGT
CTCTCTTTTTTTAATTTAACCGCGCCTATTAAAGAAACGATCAAAGATAA
AGACTGAGCCTTTATAAAGGACTAAAACGATCATACAAAGAATGGGTAAA
CATATAATAACCGCTTCACAAACAAGCAATATTTCACCAAGGTTGTAATA
AAGTTTGTCTTGAAGCAAATCCGCATTGTTAGTCACTGCCCAAAACATGT
TGAAAAATGTCAATAATAGCAAAACTAAAATTGACACGATTTGAATAAAA
TTCAAATTCTCCTCCCTAAACGGCTTTTGCACAAAATCATGAACAGCAAA
AATAAAGAAAAGCAAACCCACTGGATACAATTTAACGATCGGTGACGAAA
TAAATGTTGTCATGACGATCAATAAAAAACGGCGTAAAATCAAAACAGGT
TCCCAGATGAGATGAGATTCTTGGTTTTTCAAATTCAATTTGAAAGGTCC
GTTTAACACACCCAATATTTGATCTTTTTCATCGAGAGTGGCTTGGTCGA
AAACGAAATGGTACTGGGTGAACGCCAGAGGGCGGATGACCATGAAATAA
AGTGATAGGGGCGGTAAAGTAAGGATGAGAAGAAACTCGTTGGGCGAGAT
ACGATATGATCGAAGGGCGCGGCAGCCAGTGTACAAGACTAACGGGAAAG
GGACCACCCATAAACCAATCGCAACCATGATAAGATATTGCCAATCAGTA
TAACATTTGATTGAGGCTTGAACGCGAAGATACGATTCGCCAGCAACCTC
TACACAATGAATATTTCGTAAACAAAAAACTGAGATATTGGAATAACTGA
GTAGCAAAACATTGACATATGCTCCTTTCAAACGACGTAAGAATGACTGC
GGACGGACTTGAGCGGTAGTTCCATCCTTGAACCTCTTCTTTATAATGAA
ATTGAGTGCAACACAGATAATCATTGCCAGTAAAAGAATTGCCAAACATG
CTAACGATAAACTAGATTTCAATGCATCCATAACAACCATACTATTTGTA
CACAGAGGACAAATTTTGATGAAACTGGAAGTGAAATCCAATTTGATATT
GAAGAATGTAAACAAAAAGCTGACAAAGTTTGGCATGTGGTAATAAGTCT
TTGCTGAAGCAACAACTCGAATGATGGAAGCGGTTTGGTAAAAAAAGAAT
GTGATTTTAATTATGCCAGGTAGTTGGTAGGATGGTGAGAGGTTTTTTCT
AAACGGAGAACTCGTAATCAATAGTTTGTTATTATCGTCGTTGTCCAGAA
GTGATTCCTCGGTCTCAACATTTTTATTTTTATTTCTTATGTAGTTCCAA
ACGTCTTTGTTGAACAAGAAAAACAAACAAATCAAAGCAGCCATCAATAT
ATATCCCAACCACACGGTCCACGAATACTCACAACACGATTTATCCATAC
ATTCGTTGTGACTGAATAAAGATAAAACATGTCCTTTTTGGCAATCGCCG
CAAAGTCTCCCTTCCCGATTCCCAGCACAAGTGTTGTATGACTTGCATGT
TTCAAAAGACGAGCAACAATATAAAGGAGGACATGAATAGAATGTCACTT
TGCCAGAGCTGTCAGCTAATCCCCAGAAATTGCCTTTACTTCGAATAATG
CCGTCTTTGCAAGAGGCTTGGTAGGGGCATAAATGGCAGTTAATGTTATG
GACTGTTATGTTATCAGCTCTTTCATTGCCTGTTATAAAAGCATGACCGT
TTGCGTTATAAGATGAACTATTACAGGTGATGCAGTGTAGTCTCAAATAT
TGGTAGCTCTCAAACTCTTCGTAGATGTAACTTCCTTCAAAGCAATTCAA
TTTTGAGGTCTTTGTGATTTCAAGCCATCCTGTTGGATAGCTATAAATAC
TTGGCTCAATCCAAATGCTCCTGATATCATTAAACAAGGGGCTCCTAATA
GAATTAACAACGGTGTTAACGATTGAAACTGAAGTATATGGTCTTTCACC
GGTCCCTAGCTTGGTAAAAATAGATCCAGCTTGATTAGAACGGGCTGAAT
TATTGTTGAAGGTACAATTGACTAAATCCATGTCAGTTGAGCGTGTTGTC
AAGGCTGCAGCTCTGTCAGTTGGTATCATTGGTTGATCACTTATGTAGTT
ATCTGCGAATGTCAGATTGATCAATTCTACACTCCCACGTTCTAATTTGA
CTGCACCGTAAGATGCTCTCTTGAAAGTGCAATCTCGGATTGTTCCTTCC
CAATAATTAGTATCACCAGGGTGAACTTGTAGCATGAATGCATAATCTCC
TTCTTGATCCCCATACTCTGACGAACCTTGAAATGTACAATTGGTTACAC
TGAGTCTGCCATATTCAATTGTAGTCTCTACCGATGATCGAAAAAACTGA
CTCTGGTGTAATTGAAGATCTTTTATTGGATTAGATGAAAGTAAGGAATC
AATGAGTATTGATCTATTAACTGTTATTCTTTGGAAGGTGATGGCCATTA
TCTGATTAACAAAATGACAATCATCAAAAGTTATGCTTGCATGGTAGTCA
ATACTAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048382-exon-scaffold_142-1575043694:559534..559643 | TCONS_00048382-exon-scaffold_142-1575043694:559534..559643 | Clytia hemisphaerica | exon |
| TCONS_00048382-exon-scaffold_142-1575043694:552586..553478 | TCONS_00048382-exon-scaffold_142-1575043694:552586..553478 | Clytia hemisphaerica | exon |
| TCONS_00048382-exon-scaffold_142-1510915933:559534..559643 | TCONS_00048382-exon-scaffold_142-1510915933:559534..559643 | Clytia hemisphaerica | exon |
| TCONS_00048382-exon-scaffold_142-1510915933:552586..553478 | TCONS_00048382-exon-scaffold_142-1510915933:552586..553478 | Clytia hemisphaerica | exon |
| TCONS_00048382-exon-scaffold_142-1491911889:559534..559643 | TCONS_00048382-exon-scaffold_142-1491911889:559534..559643 | Clytia hemisphaerica | exon |
| TCONS_00048382-exon-scaffold_142-1491911889:552586..553478 | TCONS_00048382-exon-scaffold_142-1491911889:552586..553478 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_142 | supercontig | scaffold_142:552586..559643 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012334 | Pectin_lyas_fold |
| IPR011050 | Pectin_lyase_fold/virulence |
Blast
The following BLAST results are available for this feature:
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