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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048381 ID=TCONS_00048381|Name=TCONS_00048381|organism=Clytia hemisphaerica|type=transcript|length=3308bpRun BLAST on NCBI protein sequence of TCONS_00048381-protein >TCONS_00048381-protein ID=TCONS_00048381-protein|Name=TCONS_00048381-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1018bp MSSVLQCPITALKCFNNLLLTGQKSKLLLYNVEDHNLLVTKNIFQRNSVHRun BLAST on NCBI transcript from alignment at scaffold_142:536043..573393- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00048381 ID=TCONS_00048381|Name=TCONS_00048381|organism=Clytia hemisphaerica|type=transcript|length=37351bp|location=Sequence derived from alignment at scaffold_142:536043..573393- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_142:536043..573393- >TCONS_00048381 ID=TCONS_00048381|Name=TCONS_00048381|organism=Clytia hemisphaerica|type=CDS|length=58026bp|location=Sequence derived from alignment at scaffold_142:536043..573393- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00048381 vs. Swiss-Prot (Human)
Match: WDR6 (WD repeat-containing protein 6 OS=Homo sapiens GN=WDR6 PE=1 SV=1) HSP 1 Score: 269.24 bits (687), Expect = 9.952e-75 Identity = 267/1001 (26.67%), Postives = 431/1001 (43.06%), Query Frame = 3
Query: 258 SSVLQCPITALKCFNNXXXXXXXXXXXXYNVE--DHNLLVTK--NIFQRNSVHKFCEITP---------GEFLVIGGKSIRRIKIDQTSKETCSVHFVSKEKEFKVWVWDGIHLEGSKFLLISIHNTTFVWDSELDETLPVSSCQEQCILYSARL-QRTENEILVAAGTVFNQILLWKTDVDVKNHVFVQDMKRFCGHEGVIFSIRFHPRSQEILSVSDDRSIRIWDT-------ETTECLQVLYGHTARVWDAMFVANGNIVSIGEDATCIVWDRSNVAILKKHKGHKGKSIWSMEID--QGSIYTXXXXXXIRKWPLDSAAQPIKTKECMLSQELRRNKGDKEDDFPRIVKFITPT---RLLVFTNNGFLLSFDHNKEKSWVVLHEDSSYYTYCVLDCKEDVVAFG-----NLKGMVKLCYLGCPRDVLSEQIFGTGKVYNL-LILNSENQKQLLACGPEGELKLYTIEFSNQIPTA-LKLLSSFILPHSKQRWVTNAILYNNPESGFEQWKLVCGDRRGSLHLFDG----------------------------------SSKAPLDSALGVHGKTGVTSVVQHGNHLFTTGRDGNFRKYHVTGNKIVLVDKQKVCKGLDWIEGIWFHED-DVIVYGFYLQSYFGLWSYEKKEILLKIQCGGGYRSWDVSFPNQDTK-TLQLAYLKGPVVNIASCQWNEEEQSCVFKEGLHGKEVVCAK-----LLGYRY-------------VSEGREW--LMATGSEDTTINFVIYKENTNTTELIHTAVGHIGGVKDITF----MPSSQNSSR--LSGNLISCGSRTSLKKWYLDCPSFISRSTILKTCFTNGDHEASLTPSTILPPFNKNKTDLSC---CLATEIFNPEMNPKQLKLRTGEFIDDMRYMSCDVWPLLDNVNENVSEGTFVCACACSDGAVRIYLFDGHGIEMISLLGDKKHCFQTVKWLHV--------SRDHIVMATSTDGHLSMWNLEKIFE 2942
S ++ P+T L+C + LL G+ +L+Y+++ H ++ + N+ +H F + P V G K +R +KI + + S W+WD LEG+ L + HN+ ++D + L C ++C L SA L E+ + AG V NQ+L+W + ++ V +R GH G+IFS+ + + + S+DRS+RIW + + +GH+ARVW + N ++S GED C+VW IL+ +GH+G+ I ++ Q + TGG D GIR W L + + R P +K +T RLL T+ G L +D + K W L ED + +YC+L+ FG N +G VK+ + P + + +F GKV++L L + LLA GP G + I + +K ++LP SKQRW T + P F LVCGDRRGS+ LF + P+ + +HGK GVTSV HG +++TTGRDG + + V ++ V +QK C+G++W+ G+ D +++ GF+ + +W+ E L + CGGG+RSW S DT+ + AYLK V + + +EGLHG+E+ C K LG Y SEG + ++ T SEDTT+ + T + + HI V+ + P + L+ +++S G R + CF S ++ P + L+C L++ + + ++ + R + + RYMS V L + G V A ACSDGAVR++L G ++ LL + H + V +H R ++ + +TDG L+ W+L + +
Sbjct: 14 SELILLPVTGLECVGDRLLAGEGPDVLVYSLDFGGHLRMIKRVQNLLGHYLIHGF-RVRPEPNGDLDLEAMVAVFGSKGLRVVKISWGQGHFWEL-WRSGLWNMSDWIWDARWLEGNIALALG-HNSVVLYDPVVGCILQEVPCTDRCTLSSACLIGDAWKELTIVAGAVSNQLLVWYPATALADNKPVAPDRRISGHVGIIFSMSYLESKGLLATASEDRSVRIWKVGDLRVPGGRVQNIGHCFGHSARVWQVKLLEN-YLISAGEDCVCLVWSHEG-EILQAFRGHQGRGIRAIAAHERQAWVITGGDDSGIRLWHLVGRGYRGLGVSALCFKSRSR---------PGTLKAVTLAGSWRLLAVTDTGALYLYD-VEVKCWEQLLEDKHFQSYCLLEAAPGPEGFGLCAMANGEGRVKVVPINTPTAAVDQTLF-PGKVHSLSWALRGYEELLLLASGPGGVVACLEISAAPSGKAIFVKERCRYLLPPSKQRWHTCSAFL--PPGDF----LVCGDRRGSVLLFPSRPGLLKDPGVGGKARAGAGAPVVGSGSSGGGNAFTGLGPVSTLPSLHGKQGVTSVTCHGGYVYTTGRDGAYYQLFVRDGQLQPVLRQKSCRGMNWLAGLRIVPDGSMVILGFHANEFV-VWNPRSHEKLHIVNCGGGHRSWAFS----DTEAAMAFAYLKDGDVMLYRALGGCTRPHVILREGLHGREITCVKRVGTITLGPEYGVPSFMQPDDLEPGSEGPDLTDIVITCSEDTTVCVLALPTTTGSAHALTAVCNHISSVRAVAVWGIGTPGGPQDPQPGLTAHVVSAGGRAEMH------------------CF-----------SIMVTPDPSTPSRLACHVMHLSSHRLDEYWDRQRNRHRMVKVDPETRYMSLAVCEL-----DQPGLGPLV-AAACSDGAVRLFLLQDSG-RILQLLAETFHHKRCVLKVHSFTHEAPNQRRRLLLCSAATDGSLAFWDLTTMLD 951 The following BLAST results are available for this feature:
BLAST of TCONS_00048381 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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