Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048367 ID=TCONS_00048367|Name=TCONS_00048367|organism=Clytia hemisphaerica|type=transcript|length=2144bpRun BLAST on NCBI transcript from alignment at scaffold_142:438278..454377- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00048367 ID=TCONS_00048367|Name=TCONS_00048367|organism=Clytia hemisphaerica|type=transcript|length=16100bp|location=Sequence derived from alignment at scaffold_142:438278..454377- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00048367 vs. Swiss-Prot (Human)
Match: S28A3 (Solute carrier family 28 member 3 OS=Homo sapiens GN=SLC28A3 PE=1 SV=1) HSP 1 Score: 375.555 bits (963), Expect = 7.295e-119 Identity = 193/387 (49.87%), Postives = 270/387 (69.77%), Query Frame = 2 Query: 665 RTEIGFNVFKWLGDRINILLSFSGPGTELIFG---KSDVFAFAVLPIITYFSSLTYVLYYLGFMQVIINKLAWILQITMGATATESVNTAGNIFLGQTESLLLIRPFIPKMTKSELHALMTGGLATIAGSLMALYIIFGVSASHLLSASVMSAPAALAMSKLMYPETEEPEFV--GEVKTEATEERNIFEAIAVGASLSXXXXXXXXXXXXAFVSIVSLFNGLLSWLGSMVDCPQLSFEFLCSYLFMPFAYLMGVEYQDSFHVGEMLGTKTFLTEFIAYKQLSAMIKNRKF---QIAGGLQ--LSVRSEVISTYALCGFSNFGSMGVIMGVLTGIAPEKRTIFSQLVFRALVAATLACFMTASIAGLLYKDLDVTPTPGPTNVTRIM 1795 RT+ GF F WLG ++ L ++ G +FG K FAF VLPI+ +FS++ +LYYLG MQ II K+ WI+ +T G++ ESV +GNIF+GQTES LL+RP++P +TKSELHA+MT G +TIAGS++ YI FGV +SHLL+ASVMSAPA+LA +KL +PETE+P+ +K E+ + N+ EA GAS SI ++ N+ V +IAF++++S N LSW G+M D PQLSFE +CSY+FMPF+++MGVE+QDSF V ++G KTF EF+AY+ LS I RK + G+Q +S+RSE+I+TYALCGF+N GS+G+++G LT +AP ++ + RAL+A T+ACFMTA IAG+L + TP N ++ Sbjct: 245 RTDPGFIAFDWLGRQVQTFLEYTDAGASFVFGEKYKDHFFAFKVLPIVVFFSTVMSMLYYLGLMQWIIRKVGWIMLVTTGSSPIESVVASGNIFVGQTESPLLVRPYLPYITKSELHAIMTAGFSTIAGSVLGAYISFGVPSSHLLTASVMSAPASLAAAKLFWPETEKPKITLKNAMKMESGDSGNLLEAATQGASSSISLVANIAVNLIAFLALLSFMNSALSWFGNMFDYPQLSFELICSYIFMPFSFMMGVEWQDSFMVARLIGYKTFFNEFVAYEHLSKWIHLRKEGGPKFVNGVQQYISIRSEIIATYALCGFANIGSLGIVIGGLTSMAPSRKRDIASGAVRALIAGTVACFMTACIAGIL------SSTPVDINCHHVL 625 The following BLAST results are available for this feature:
BLAST of TCONS_00048367 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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