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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048365 ID=TCONS_00048365|Name=TCONS_00048365|organism=Clytia hemisphaerica|type=transcript|length=1352bp
CTTTACTCCATATTGATTATAAACAGAGAAAATGTTGAGAGTTCTGGTAA
CTATTACCTTCCTTGGCGCTGTTTCTGCAGCTGTTTTAACCAAGATTGCC
AACTGGGTGAATACATTTGACCGTGGAGGTTGGTCCAATTGTACTGATGG
ATATTTCTTGACTGGATTATACAGAGATGCTCGCGGTAAGATTGGAGATG
AAAGAATTGGTAAGATCAAACAAGGAGATTGTAAAAGTGCTGATATTGAA
TTGACTGCAGGTTGCCAGCATATGGATTGTTATAATTTGAACATCTGGGA
CATCTTTGATAAGAAAGGCTGGGTCTCCTGTAAGCCTGGTTACTTCATTC
AATCTATATACTCTACTAAAGGTGAGAAGCTTAGTAATATCGAAGAAGTC
CATTGTTGCAAACCAAAATCCAAGAATGTCGTCCAAGGTAAATGCTACAA
TCACAATATCTGGTTCTCATTTGACCACAAAGGCTGGTCTAGATGCAACC
CTGGCTACTATATACAAGGCATGTTCAGAAGTGACTGCAACCAATTGTAT
TGTCTTGAAGAATTCAAATGTTGTGAGATGAAAgctgtttcaaaaaaagt
ttcaacaaaGATTGTAAACTGGAGGTATCCATTCGGCTTTCAACCAAGCT
GGTGGTCACGCTGTCCTGATGAATACTATCTCACTGGTTTATGGAGAAGT
GCTTTTACACCAGGCGGTGAAAGAATAGGTAAAATCCAACAAGGACATTG
TCAAAGTGCACCGGAAAATCTTGAATCTAAACAAGAATGTAAATCGAAAG
ATATTACCTATATCTTTGATAAAGAAGGTTGGGCACAATGTGATTCTGGT
TACTATATTAAATTAATCCGCACTTCCAGAGGAATTGATCTTCGCAATAT
TGAGGAATTCTACTGTTGTCGACCACGAGGTAAAGTAACAGAAGATGGAG
ACTGTTACGTTCAAAATGTCTGACATCCTTTGATGATCAAGGATGGTCTA
AATGTAGATTCGGATACTACATGCAAGGGATGTTCCGGAACAAATGCGAG
CAAGTTTTCTGTCTTGAAGAATTCAGATGTTGTTCAATGAAACAAAAATG
TGAACTTAACAATGACAATTAGATCAGATGTTGTACATGTTTATTTTCTT
GAGGATTTATTCACCTTCGTCTTTTGATATCTTCGGACATACCTTGGCAT
CTGATTGGTTGCATATGacatattgactgattttacgttaCAATTAGTCa
gctacacccctgtctcagtgaatTGAATTGTAGCACGATACCTTGAAATC
TGGTGAGCAAAACATTATTTTGATTAGTTGGATTGGATTAATACATATTT
AA Run BLAST on NCBI protein sequence of TCONS_00048365-protein >TCONS_00048365-protein ID=TCONS_00048365-protein|Name=TCONS_00048365-protein|organism=Clytia hemisphaerica|type=polypeptide|length=313bp
MLRVLVTITFLGAVSAAVLTKIANWVNTFDRGGWSNCTDGYFLTGLYRDA
RGKIGDERIGKIKQGDCKSADIELTAGCQHMDCYNLNIWDIFDKKGWVSC
KPGYFIQSIYSTKGEKLSNIEEVHCCKPKSKNVVQGKCYNHNIWFSFDHK
GWSRCNPGYYIQGMFRSDCNQLYCLEEFKCCEMKAVSKKVSTKIVNWRYP
FGFQPSWWSRCPDEYYLTGLWRSAFTPGGERIGKIQQGHCQSAPENLESK
QECKSKDITYIFDKEGWAQCDSGYYIKLIRTSRGIDLRNIEEFYCCRPRG
KVTEDGDCYVQNV Run BLAST on NCBI transcript from alignment at scaffold_142:379990..381713- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048365 ID=TCONS_00048365|Name=TCONS_00048365|organism=Clytia hemisphaerica|type=transcript|length=1724bp|location=Sequence derived from alignment at scaffold_142:379990..381713- (Clytia hemisphaerica)
CTTTACTCCATATTGATTATAAACAGGTAAGTCTTGCTATTGTAAACCTT
TTTACATAGTTTTTGAAGTTCGAATTGATGTGTATTAATTTTTACCTTTC
TTAAAATCCAGTCAATTTTGGTTTCAAATTTTTTTTGTCATAAGTTTCTT
CACAGAGCGTCCATCTTACGTCTATCTAATTTTTTTAAACAATTCTCCAG
TGAATAATTCCTCGAAAACAGTTTCAAGTGGTCTAATTTTAAAAGTTATT
TTACAAAAGTTTTCACGTATCTTACTACCCGCAAGCCTGTCTCTCGCTTC
AGCTCTGAACTGGATTTACTGGGGCTATATTAATAAGGTTTCAACTCTAT
CTGTCTACATCGAGGTATAAATATAATACTCTTTTCAATGTCTTTCAGAG
AAAATGTTGAGAGTTCTGGTAACTATTACCTTCCTTGGCGCTGTTTCTGC
AGCTGTTTTAACCAAGATTGCCAACTGGGTGAATACATTTGACCGTGGAG
GTTGGTCCAATTGTACTGATGGATATTTCTTGACTGGATTATACAGAGAT
GCTCGCGGTAAGATTGGAGATGAAAGAATTGGTAAGATCAAACAAGGAGA
TTGTAAAAGTGCTGATATTGAATTGACTGCAGGTTGCCAGCATATGGATT
GTTATAATTTGAACATCTGGGACATCTTTGATAAGAAAGGCTGGGTCTCC
TGTAAGCCTGGTTACTTCATTCAATCTATATACTCTACTAAAGGTGAGAA
GCTTAGTAATATCGAAGAAGTCCATTGTTGCAAACCAAAATCCAAGAATG
TCGTCCAAGGTAAATGCTACAATCACAATATCTGGTTCTCATTTGACCAC
AAAGGCTGGTCTAGATGCAACCCTGGCTACTATATACAAGGCATGTTCAG
AAGTGACTGCAACCAATTGTATTGTCTTGAAGAATTCAAATGTTGTGAGA
TGAAAGCTGTTTCAAAAAAAGTTTCAACAAAGATTGTAAACTGGAGGTAT
CCATTCGGCTTTCAACCAAGCTGGTGGTCACGCTGTCCTGATGAATACTA
TCTCACTGGTTTATGGAGAAGTGCTTTTACACCAGGCGGTGAAAGAATAG
GTAAAATCCAACAAGGACATTGTCAAAGTGCACCGGAAAATCTTGAATCT
AAACAAGAATGTAAATCGAAAGATATTACCTATATCTTTGATAAAGAAGG
TTGGGCACAATGTGATTCTGGTTACTATATTAAATTAATCCGCACTTCCA
GAGGAATTGATCTTCGCAATATTGAGGAATTCTACTGTTGTCGACCACGA
GGTAAAGTAACAGAAGATGGAGACTGTTACGTTCAAAATGTCTGACATCC
TTTGATGATCAAGGATGGTCTAAATGTAGATTCGGATACTACATGCAAGG
GATGTTCCGGAACAAATGCGAGCAAGTTTTCTGTCTTGAAGAATTCAGAT
GTTGTTCAATGAAACAAAAATGTGAACTTAACAATGACAATTAGATCAGA
TGTTGTACATGTTTATTTTCTTGAGGATTTATTCACCTTCGTCTTTTGAT
ATCTTCGGACATACCTTGGCATCTGATTGGTTGCATATGACATATTGACT
GATTTTACGTTACAATTAGTCAGCTACACCCCTGTCTCAGTGAATTGAAT
TGTAGCACGATACCTTGAAATCTGGTGAGCAAAACATTATTTTGATTAGT
TGGATTGGATTAATACATATTTAA Coding sequence (CDS) from alignment at scaffold_142:379990..381713- >TCONS_00048365 ID=TCONS_00048365|Name=TCONS_00048365|organism=Clytia hemisphaerica|type=CDS|length=942bp|location=Sequence derived from alignment at scaffold_142:379990..381713- (Clytia hemisphaerica)
ATGTTGAGAGTTCTGGTAACTATTACCTTCCTTGGCGCTGTTTCTGCAGC
TGTTTTAACCAAGATTGCCAACTGGGTGAATACATTTGACCGTGGAGGTT
GGTCCAATTGTACTGATGGATATTTCTTGACTGGATTATACAGAGATGCT
CGCGGTAAGATTGGAGATGAAAGAATTGGTAAGATCAAACAAGGAGATTG
TAAAAGTGCTGATATTGAATTGACTGCAGGTTGCCAGCATATGGATTGTT
ATAATTTGAACATCTGGGACATCTTTGATAAGAAAGGCTGGGTCTCCTGT
AAGCCTGGTTACTTCATTCAATCTATATACTCTACTAAAGGTGAGAAGCT
TAGTAATATCGAAGAAGTCCATTGTTGCAAACCAAAATCCAAGAATGTCG
TCCAAGGTAAATGCTACAATCACAATATCTGGTTCTCATTTGACCACAAA
GGCTGGTCTAGATGCAACCCTGGCTACTATATACAAGGCATGTTCAGAAG
TGACTGCAACCAATTGTATTGTCTTGAAGAATTCAAATGTTGTGAGATGA
AAGCTGTTTCAAAAAAAGTTTCAACAAAGATTGTAAACTGGAGGTATCCA
TTCGGCTTTCAACCAAGCTGGTGGTCACGCTGTCCTGATGAATACTATCT
CACTGGTTTATGGAGAAGTGCTTTTACACCAGGCGGTGAAAGAATAGGTA
AAATCCAACAAGGACATTGTCAAAGTGCACCGGAAAATCTTGAATCTAAA
CAAGAATGTAAATCGAAAGATATTACCTATATCTTTGATAAAGAAGGTTG
GGCACAATGTGATTCTGGTTACTATATTAAATTAATCCGCACTTCCAGAG
GAATTGATCTTCGCAATATTGAGGAATTCTACTGTTGTCGACCACGAGGT
AAAGTAACAGAAGATGGAGACTGTTACGTTCAAAATGTCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048365-exon-scaffold_142-1575043694:381688..381713 | TCONS_00048365-exon-scaffold_142-1575043694:381688..381713 | Clytia hemisphaerica | exon |
| TCONS_00048365-exon-scaffold_142-1575043694:379990..381315 | TCONS_00048365-exon-scaffold_142-1575043694:379990..381315 | Clytia hemisphaerica | exon |
| TCONS_00048365-exon-scaffold_142-1510915933:381688..381713 | TCONS_00048365-exon-scaffold_142-1510915933:381688..381713 | Clytia hemisphaerica | exon |
| TCONS_00048365-exon-scaffold_142-1510915933:379990..381315 | TCONS_00048365-exon-scaffold_142-1510915933:379990..381315 | Clytia hemisphaerica | exon |
| TCONS_00048365-exon-scaffold_142-1491911889:381688..381713 | TCONS_00048365-exon-scaffold_142-1491911889:381688..381713 | Clytia hemisphaerica | exon |
| TCONS_00048365-exon-scaffold_142-1491911889:379990..381315 | TCONS_00048365-exon-scaffold_142-1491911889:379990..381315 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_142 | supercontig | scaffold_142:379990..381713 - |
Blast
The following BLAST results are available for this feature:
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