TCONS_00048361 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048361
Unique NameTCONS_00048361
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1213

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048361 ID=TCONS_00048361|Name=TCONS_00048361|organism=Clytia hemisphaerica|type=transcript|length=1213bp
gtacccccaaacaacagacgttagtaggtaccccctgtgattggtacccc
ctgtgacttatgtatatgtcaagaaatgaaaaatNATCCGATGTGCTATT
GATCCTAAGACTGTTTTCGGTTTCTTAAAGCCAGGTCGTGGAAATTGTGT
TATCAAGGCGATCTGCGACGGTGTAACTTATCAGTGTTGTCTTAATAGTA
TCGATCGTGTATCTACCTTCTGGCGTGTATTAGAACAGTTCTCCGACAAT
TTACGGTGCTGTCCGAACATTTTCTCGAGCACCGAGTCCCGACTCCCGTG
TACTCGTTGCAATAATAATCGTGTTCGTTCTTTGTCGTCTGTTCACGAAT
ATCACCGAGCAATCCAGTCACATAGTCGAAAAGCATACGGCACGCATTCA
AGCTACAGCTCGCATAGTAACCGAAATGACTCGTATAGCCGATCAGAATC
GACATCTCGCACCGAACATTCGCCGAATATAAGCTACAGTATGTCGTCAT
ATGATTTCGGTGGGCGTCGCGACTCGGAATGCGACTCACCGAACGCGACT
TCAAGTTCTCGTAAAGATTCGGTGTTCGAACCACCGCTACTAACGACTGT
CCAGAAACCGATAAATGAGTCTTCGCATACGGAAAAACACGAAACTTTGA
GCTCGGTAAAACGACGCAAGGAACGGACTCTTACTTCTGTGGTATCGACT
GATGATACGTTCGAGCCGAAACCCAAAACAAAGCGACTAGTCAAGTTACA
AGttgatgGAATCGACATAAAGTCAGCACCGAAGACTTGGacgattgatg
acgtcatggtTTTCATTGGTCAAACTGACTTGAAAGATTACGTCAATAAC
TTTAAAGAAAACGAAATTGATGGTAAAGCTCTCTTATTGCTTCAACGTGA
TCTTGTCCTTTCGCACATGGGCTTCAAGCTGGGACCTGCAGTCAAGCTAT
TGGGAATGATTGAAGAGTTGAAAATCGTACAAGAAAACTTCATGAATTGA
TTGAGACTTCATCCAAATAATATGACGGCATGAATTCGTTGTTTTCATAG
AATTCAACTACTGGCGATCaagggtcaagctggagtttttacaagttctt
tgatgactctgttggtcgttcaatgttgagacaaacgattttattacttt
ttctaaagaacgcgtcatccctattgtttaaaaataaccaatcagttaag
tATCTTGTAagaa
Run BLAST on NCBI

transcript from alignment at scaffold_142:323974..328207-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048361 ID=TCONS_00048361|Name=TCONS_00048361|organism=Clytia hemisphaerica|type=transcript|length=4234bp|location=Sequence derived from alignment at scaffold_142:323974..328207- (Clytia hemisphaerica)
GTACCCCCAAACAACAGACGTTAGTAGGTACCCCCTGTGATTGGTACCCC
CTGTGACTTATGTATATGTCAAGAAATGAAAAATNATCCGATGTGCTATT
GATCCTAAGACTGTTTTCGGTTTCTTAAAGCCAGGTTAGTTTCCGTCCGT
AAAAATTAGCGCACGGGAGAAATTGTGATGTGGAGTTTAAAGCCGGCTGT
TGAAAATTAGTAAGAGCAACAGTAGTGTTACTATACAATAGAGCCCCCTT
TAAATCTTCGCTTTTTGCNATTGTATATTTTTATAATTAAAAAGAATAAT
GATAGTTAGATAAAAGCAAGATATAAAATATAGTTCCCCAGCCCCCAGAC
CTTACTGTATAAAAGTTAAGTACCCCAGAGATCATAGGTACCCCCTGAAA
TTAAAAAAAAATCCAGCCCCCAGCCTTTTTTAGGAAGATTTTGGTTGTAG
CCCCCCCCTGCGGGCTGGGGGGGGGTTCATTCCATGTCAACCTTGAATGT
TACTGTGGCCCGTACATCGAATTGAACAAATGATGGGCCACCATAACCAA
TTCAAACTTTCTACTTTTCAGTTGAAGTATTTCTCAACCTTGAATGTTAC
TGTGGCCCATACATCGAATTGAACAAATTGAAATCAATGCAACGTATCTA
CAATGGCAACATGGTCACTGTATTGAAAAACGTTCTGGAAGATGTCATCC
GATGTGCTATTGATCCTAAGACTGTTTTCGGTTTCTTAAAGCCAGGTTAG
TTTCCGTCCGTAAAAATTAGCGCACGGGAGAAATTGTGATGTGGAGTTTA
AAGCCGGCTGTTGAAAATTAGTAAGAGCAACAGTAGTGTTACTATACAAT
AGAGCCCCCTTTAAATCTTCGCTTTTTGCTTCCCGATCCGGGATTTTTAT
TTTCCGATAAGATCTGAGGGAAAACACCAAATTGTGGGATTTTTTCAAAT
GCCTGCATCGAGTGTCAACTCTGCAGACTCTTTTTCTCATCTGTTCATTC
CAAATTTTTATACTCCATGAACGGATTGAAATACCAATGGGTTATGAAAG
AGCTTCTAATTCAATCTAGATCCGGGGATAAAGTGGTTTGAAGATTGATT
TAGTCGTTTTTGTAATAAAAAGCCTTTTTAAAAAAGGCACTTGTACTTGA
AGGGCTAAGCCACTTTCTTTGCAATCTTTCAGGTCGTGGAAATTGTGTTA
TCAAGGCGATCTGCGACGGTGTAACTTATCAGTGTTGTCTTAATAGTATC
GATCGTGTATCTACCTTCTGGCGTGTATTAGAACAGTTCTCCGACAATTT
ACGGTGCTGTCCGAACATTTTCTCGAGCACCGAGTCCCGACTCCCGTGTA
CTCGTTGCAATAATAATCGTGTTCGTTCTTTGTCGTCTGTTCACGAATAT
CACCGAGCAATCCAGTCACATAGTCGAAAAGCATACGGCACGCATTCAAG
CTACAGCTCGCATAGTAACCGAAATGACTCGTATAGCCGATCAGAATCGA
CATCTCGCACCGAACATTCGCCGAATATAAGCTACAGTATGTCGTCATAT
GATTTCGGTGGGCGTCGCGACTCGGAATGCGACTCACCGAACGCGACTTC
AAGTTCTCGTAAAGATTCGGTGTTCGAACCACCGCTACTAACGACTGTCC
AGAAACCGATAAATGAGTCTTCGCATACGGAAAAACACGAAACTTTGAGC
TCGGTAAAACGACGCAAGGAACGGACTCTTACTTCTGTGGTATCGACTGA
TGATACGTTCGAGCCGAAACCCAAAACAAAGCGACTAGTCAAGTTACAAG
GTATGAAGATTCTTCCTTATCATACATAATGTTAAACCTATTTATCTTCA
CAACCCACGATATAGTATTTTAAGGGTCTCAATATGCAAGCAGACTTTAA
CTGGTGTTTGTGATGCGGGGGAACCTTCTAGTAGCTTCTATTTTCGTTCA
ATGCAATCACATGTTGCTCTACCTAGAACTTTTTTCTACATTTTCGACAT
CAACTGTTTCTGTCTTCCTGGAAATAATATCATAATTGTTGGTAAAATAA
TACATGGCGTATCCTACCTGATCCTACACCAGTGTTTTGCTTGCTCCCGA
TCCAAAAGAATAAGAATTCAGTGTAAGAATTTATAAAAAAATCATCTGTG
TGAACTACTGCGAAAACTTCTTGTTTTGTTTTGAAAATTTCTCCTAGACA
GGTTGTTTTCGAATGTTTTTTGGACCTACCCCGGTGGGGTGGAGGTCCTA
TAAATTAACCTGTGTTCGTTCGTTCGTTCGTCTGTTACCAACTTATCTCA
GGATTGAATCATAGGAATTTTTTGATTTTTGGTACAAAGGTGCAAAATGG
TGGTGGCCAAAATGTGACGGAGCCCGTTTTTCGAAAACAAAATTTTAGGC
GAATTTGGGCCAAAAAACGGCTAAAAAACGGGTTTTTTTGGACTTTGTGA
AAAATTGGATCATTAATTTCTTCTGATTTTTTGCATGAAAGTAGGGTACC
ATCATAGGTAAAAGATGGCTCAAGTAGATTTTTGCAAAAAAATTTTGTTG
GCTTAAAAAACGCACATTTATCTATAAGAATCACTATTAATAAGCATACA
TCAATGTTCTCATGAAAATGTCACGGTAGAGCGCAGTGGTTTGAGTTTTC
TAGAAACACTTATTATTTTTTTGGCTGAAAAACGAATCTTTATCTATAAG
AATCACTATTTCTAAGCATAGATCAATGTCCTTATCCAAATTATTATTTT
TATTATTATTTTTTCTAAAATAAGAAAATGTCACGGTAGAGCGCGATGGT
TTGAGCTTTCTAGAAACACTTATTATTTTTTGGCTGAAAAACGAATCTTT
ATCTATAAGAATTACTATTTATAAGCATAGACCAATGTTCTTAATCCAAA
TTATTATTTTTTATTATTTTTTCTAAAAGAAGAAAATGTCACGGTAGAGC
GCGATGGTTTGAGTTTTCTGGAAACCTTATTTATTAAGCTGTGCATTTGT
CTGACAGTGGATTGTTTTTATAAAGAAAAGCGTTTAATAGCTTTTTTTTC
TTTTTCAAAAGTCTTTTTCAATAGTGTTGATAGTTTCTTCAAATATATAT
CCTTTCATTTTTCTTTATTTTTTTGTCTTATGTGTTTCAATGTTCATTGA
TTAGTTTGATAACCAGGTAGGTCCATAAAAGTGTCACTTGTTTTTTCGAA
AAGTTCATTCAAATGTTCAACACTCCGCTCCGAAATTTTACCGAGATTTT
TCCTCTCCTCATTACAGAAAATCTCGGAACTCGTAAAATATTTCTCGTAC
TCCACTCGAAGTCATGCGATAACTATAGTACATATTGTTTGCATATCAAA
AATAGTAGTTTGAGCTGATAGACGATTTTAATGCCCTCTTTTCCCCTTTT
TTTCAAGTTGATGGAATCGACATAAAGTCAGCACCGAAGACTTGGACGAT
TGATGACGTCATGGTTTTCATTGGTCAAACTGACTTGAAAGATTACGTCA
ATAACTTTAAAGAAAACGTAAGTTTTTTAATTTCGTGTTGCAAAAAAAAT
TCTTTCAGGTTCAAGTTATATCTCAAGTTATATTTTTTAATCTTGGACAT
CAAAGCATATTTTCACCATCAAGTTACTAATCGATTGGTATATGGTGAAA
TCCTGTATTTGACTCAAAACTAATTCCGTTTTGCCTACAGGGTCAGAAAG
AGGACCCAAGTTCCAGAAATCTGCCATTATGGAATATATATGATAATATG
AGAAACTCCGGAGCTTACTGTCATAAGGAACGAGAATATCTAGTTAGTCC
ACGCAATCGTTTTTTCTCCTGAGCCGACTAGATAGTATTGTATTTGTATT
GTATTGTAATGTGTGTTGAACTCCTCTTTCCAGGAAATTGATGGTAAAGC
TCTCTTATTGCTTCAACGTGATCTTGTCCTTTCGCACATGGGCTTCAAGC
TGGGACCTGCAGTCAAGCTATTGGGAATGATTGAAGAGTTGAAAATCGTA
CAAGAAAACTTCATGAATTGATTGAGACTTCATCCAAATAATATGACGGC
ATGAATTCGTTGTTTTCATAGAATTCAACTACTGGCGATCAAGGGTCAAG
CTGGAGTTTTTACAAGTTCTTTGATGACTCTGTTGGTCGTTCAATGTTGA
GACAAACGATTTTATTACTTTTTCTAAAGAACGCGTCATCCCTATTGTTT
AAAAATAACCAATCAGTTAAGTATCTTGTAAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030770XLOC_030770Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048361-exon-scaffold_142-1575043694:328074..328207TCONS_00048361-exon-scaffold_142-1575043694:328074..328207Clytia hemisphaericaexon
TCONS_00048361-exon-scaffold_142-1575043694:326408..327025TCONS_00048361-exon-scaffold_142-1575043694:326408..327025Clytia hemisphaericaexon
TCONS_00048361-exon-scaffold_142-1575043694:324691..324800TCONS_00048361-exon-scaffold_142-1575043694:324691..324800Clytia hemisphaericaexon
TCONS_00048361-exon-scaffold_142-1575043694:323974..324324TCONS_00048361-exon-scaffold_142-1575043694:323974..324324Clytia hemisphaericaexon
TCONS_00048361-exon-scaffold_142-1510915933:328074..328207TCONS_00048361-exon-scaffold_142-1510915933:328074..328207Clytia hemisphaericaexon
TCONS_00048361-exon-scaffold_142-1510915933:326408..327025TCONS_00048361-exon-scaffold_142-1510915933:326408..327025Clytia hemisphaericaexon
TCONS_00048361-exon-scaffold_142-1510915933:324691..324800TCONS_00048361-exon-scaffold_142-1510915933:324691..324800Clytia hemisphaericaexon
TCONS_00048361-exon-scaffold_142-1510915933:323974..324324TCONS_00048361-exon-scaffold_142-1510915933:323974..324324Clytia hemisphaericaexon
TCONS_00048361-exon-scaffold_142-1491911889:328074..328207TCONS_00048361-exon-scaffold_142-1491911889:328074..328207Clytia hemisphaericaexon
TCONS_00048361-exon-scaffold_142-1491911889:326408..327025TCONS_00048361-exon-scaffold_142-1491911889:326408..327025Clytia hemisphaericaexon
TCONS_00048361-exon-scaffold_142-1491911889:324691..324800TCONS_00048361-exon-scaffold_142-1491911889:324691..324800Clytia hemisphaericaexon
TCONS_00048361-exon-scaffold_142-1491911889:323974..324324TCONS_00048361-exon-scaffold_142-1491911889:323974..324324Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_142supercontigscaffold_142:323974..328207 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.49776	1.6818	1.12663	0.9198	2.15133	1.35244	3.0858	2.13547	2.59135	2.36845	1.60277	0.933597	1.73482	1.49355	0.878299	1.43858	1.29384	1.33172	0.800989	1.88024	2.27197	1.88676	1.0262	1.58133	1.09267	2.07582	1.91933	1.61497	1.12827	1.20139
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048361 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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