TCONS_00048331 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048331
Unique NameTCONS_00048331
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2009

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048331 ID=TCONS_00048331|Name=TCONS_00048331|organism=Clytia hemisphaerica|type=transcript|length=2009bp
TTTGCAACAAGTACTGGTAAACTGTAACACATTGAAAATgagttaatttt
tattttgagggAGGATAGATTTTGCAACGAGTACTGGTAAACTGTAACAC
ATTGAAAATgagttaatttttattttgagggAGGATAGATTTTGCAACGA
GTACTGGTAAACTGTAACACATTGAAAATgagttaatttttattttgagg
gAGGATAGATTTTGCAACAAGTACTGGTAAACTGTAACACATTGAAAATg
agttaatttttattttgagggAGGATAGATTTTGCAACAAGTACTGGTAA
ACTGTAACACATTGAAAACaagttaatttttattttgagggAGGATAGAT
TTTGCAACAAGTACTGGTAAACTGTTGCACATTGAAAATgagttaatttt
tatttttagggaGGATAGATTTTGCAACAAGTACTGGTAAACTGTAACAC
ATTGAAAACaagttaatttttattttgagggAGGATAGATTTTACAACAA
GTACTGGTAAACTGTTGCACATTGAAAATgagttaatttttatttttagg
gaGGATAGATTTTGCAACAAGTACTGGTAAACTGTAACACATTGAAAACa
agttaatttttattttgagggAGGATAGATTTTGCAACGAGTACTGGTAA
ACTGTTGCACATTGAAAACaagttaatttttattttgagggAGGATAGAT
TTTGCAACAAGTACTGGTAAACTGTTGCACATTGAAAACaagttaatttt
tatttttagggaGGATATATTTTGCAACAAGTGCTGGTAAACTGTAACAC
ATTGAAAATgagttaatttttatttttagggaGGATAGATTTTGCAACAA
GTACTGGTAAACTGTTACACATTGAACAACATATGAAAGAATATGGCTCC
ACCATCATCGAACCTCGTGAAATTCTGGTTATTGTGCAAATTGAAAACAA
AGGACAACTGGGTTTGAAATATAATCCGCTTTTCACAGCCACAACAGAAG
AAGATATCAGCCTGAAAGAGAGTATTGAGCTCCAAAGCACATACCGAGAC
CCTCATCAACCCAAACatcagaaaaacaaaaagaagccATTGGTCAGAAC
CACTACATGGAGGTCTGCCAGGCGGATTGCAGTTACCACAACCAAAGCTC
CACCAAAGACAGCAAATGTACTTTTAAGAAGACAAGCTTCAAATCTCGCT
CCATAAAAAGTGAAAGGAAATTAAGTGGCACAGTGAAGCACGCATCATTA
GTTATACTGCGATGATGTTTACGTACcattagaaaagaaaatcattatCC
ACCACTTTAAACCAGACAATACCACTGAACCAGTATGACAATTGATGCTA
AAGCAATTATATAGGAGAACAGAGATTGAAGATTACATACCtcctaaaaa
taaatatacccaaattcaaatttgaaaacgtgACGAGTTTGCGTGAGGAG
ATGGAAGCAATTGATGTCTTTTAAGAAAAAGGGATACCATatgttttaaa
caaaacaataaGTTTCAGCTTCTGCAATACTGGTGAAAAGGAGAATGTAA
ACAAGGAGAATTTTCATTCTGATGAAGAAAAAGCAAAGGAACAAACAGTA
ACAACTTCAAGTCAGCAAAATCAGGAAAGCATTTGCCGGACCCATGTTTA
GATGTGTTTCTAATTTGTCAAGTTACGTaatatccgccattatggaagca
aaagTTCGATCAGCGGAAGTGATCGCCACTACAGATTTGAAAACctgttt
ccataatggtggaagtCACGAAACTTAAGGAAACATGAAAACCTATATAG
CGTGTTAATGCTTATTGACTTGAAGGACACGATGATATATGCTACTTGGT
CAACATTAAGGGACAAAAACCTACATGATTCAATGTGGTTTTATCAAGTA
TATACAATCAAAActtatcaaaatatttacagATTCTTCattacaataaa
ataaaaataatgcattaacttaagtacacgttttttataagaacaaacta
tgtaaaaac
Run BLAST on NCBI

transcript from alignment at scaffold_142:921625..924014+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048331 ID=TCONS_00048331|Name=TCONS_00048331|organism=Clytia hemisphaerica|type=transcript|length=2390bp|location=Sequence derived from alignment at scaffold_142:921625..924014+ (Clytia hemisphaerica)
TTTGCAACAAGTACTGGTAAACTGTAACACATTGAAAATgagttaatttt
tattttgagggAGGATAGATTTTGCAACGAGTACTGGTAAACTGTAACAC
ATTGAAAATgagttaatttttattttgagggAGGATAGATTTTGCAACGA
GTACTGGTAAACTGTAACACATTGAAAATgagttaatttttattttgagg
gAGGATAGATTTTGCAACAAGTACTGGTAAACTGTAACACATTGAAAATg
agttaatttttattttgagggAGGATAGATTTTGCAACAAGTACTGGTAA
ACTGTAACACATTGAAAACaagttaatttttattttgagggAGGATAGAT
TTTGCAACAAGTACTGGTAAACTGTTGCACATTGAAAATgagttaatttt
tatttttagggaGGATAGATTTTGCAACAAGTACTGGTAAACTGTAACAC
ATTGAAAACaagttaatttttattttgagggAGGATAGATTTTACAACAA
GTACTGGTAAACTGTTGCACATTGAAAATgagttaatttttatttttagg
gaGGATAGATTTTGCAACAAGTACTGGTAAACTGTAACACATTGAAAACa
agttaatttttattttgagggAGGATAGATTTTGCAACGAGTACTGGTAA
ACTGTTGCACATTGAAAACaagttaatttttattttgagggAGGATAGAT
TTTGCAACAAGTACTGGTAAACTGTTGCACATTGAAAACaagttaatttt
tatttttagggaGGATATATTTTGCAACAAGTGCTGGTAAACTGTAACAC
ATTGAAAATgagttaatttttatttttagggaGGATAGATTTTGCAACAA
GTACTGGTAAACTGTTACACATTGAACAACATATGAAAGAATATGGCTCC
ACCATCATCGAACCTCGTGAAATTCTGGTTATTGTGCAAATTGAAAGTAT
AATAGAACCTATAGCCTTTTGAGTTATATTCTCATCGCTAAGTTTATAAC
GTCCATTAAACCTAAACCGCCAAAACAAACTCGTAGTCAGACCAGAGTCA
AGTAaaactaaatagaaaaaaatcacaGCATTGAGACGAAATCTTTCAGT
AGAACCTAGAATATAATTTaccatattttcatttttcacttcCTTAGACA
AAGGACAACTGGGTTTGAAATATAATCCGCTTTTCACAGCCACAACAGAA
GAAGATATCAGCCTGAAAGGTAAGGCTCTTCAGGATTTAAAATGCATGAT
TACAATATCGCATTTTCGGTACTTTTAGTCTGGTAGTTATCAATTATGAT
GGTTCATTGACTGTGATAAGTCATACCTGAAGATTTCAAGAATACTAAAg
gccaaaaacaaaatttcattcattCGTCATTTATACCCTATTCTTTTAGA
GAGTATTGAGCTCCAAAGCACATACCGAGACCCTCATCAACCCAAACatc
agaaaaacaaaaagaagccATTGGTCAGAACCACTACATGGAGGTCTGCC
AGGCGGATTGCAGTTACCACAACCAAAGCTCCACCAAAGACAGCAAATGT
ACTTTTAAGAAGACAAGCTTCAAATCTCGCTCCATAAAAAGTGAAAGGAA
ATTAAGTGGCACAGTGAAGCACGCATCATTAGTTATACTGCGATGATGTT
TACGTACcattagaaaagaaaatcattatCCACCACTTTAAACCAGACAA
TACCACTGAACCAGTATGACAATTGATGCTAAAGCAATTATATAGGAGAA
CAGAGATTGAAGATTACATACCtcctaaaaataaatatacccaaattcaa
atttgaaaacgtgACGAGTTTGCGTGAGGAGATGGAAGCAATTGATGTCT
TTTAAGAAAAAGGGATACCATatgttttaaacaaaacaataaGTTTCAGC
TTCTGCAATACTGGTGAAAAGGAGAATGTAAACAAGGAGAATTTTCATTC
TGATGAAGAAAAAGCAAAGGAACAAACAGTAACAACTTCAAGTCAGCAAA
ATCAGGAAAGCATTTGCCGGACCCATGTTTAGATGTGTTTCTAATTTGTC
AAGTTACGTaatatccgccattatggaagcaaaagTTCGATCAGCGGAAG
TGATCGCCACTACAGATTTGAAAACctgtttccataatggtggaagtCAC
GAAACTTAAGGAAACATGAAAACCTATATAGCGTGTTAATGCTTATTGAC
TTGAAGGACACGATGATATATGCTACTTGGTCAACATTAAGGGACAAAAA
CCTACATGATTCAATGTGGTTTTATCAAGTATATACAATCAAAActtatc
aaaatatttacagATTCTTCattacaataaaataaaaataatgcattaac
ttaagtacacgttttttataagaacaaactatgtaaaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030757XLOC_030757Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048331-exon-scaffold_142-1491911889:921625..922570TCONS_00048331-exon-scaffold_142-1491911889:921625..922570Clytia hemisphaericaexon
TCONS_00048331-exon-scaffold_142-1510915933:921625..922570TCONS_00048331-exon-scaffold_142-1510915933:921625..922570Clytia hemisphaericaexon
TCONS_00048331-exon-scaffold_142-1575043694:921625..922570TCONS_00048331-exon-scaffold_142-1575043694:921625..922570Clytia hemisphaericaexon
TCONS_00048331-exon-scaffold_142-1491911889:922772..922843TCONS_00048331-exon-scaffold_142-1491911889:922772..922843Clytia hemisphaericaexon
TCONS_00048331-exon-scaffold_142-1510915933:922772..922843TCONS_00048331-exon-scaffold_142-1510915933:922772..922843Clytia hemisphaericaexon
TCONS_00048331-exon-scaffold_142-1575043694:922772..922843TCONS_00048331-exon-scaffold_142-1575043694:922772..922843Clytia hemisphaericaexon
TCONS_00048331-exon-scaffold_142-1491911889:923024..924014TCONS_00048331-exon-scaffold_142-1491911889:923024..924014Clytia hemisphaericaexon
TCONS_00048331-exon-scaffold_142-1510915933:923024..924014TCONS_00048331-exon-scaffold_142-1510915933:923024..924014Clytia hemisphaericaexon
TCONS_00048331-exon-scaffold_142-1575043694:923024..924014TCONS_00048331-exon-scaffold_142-1575043694:923024..924014Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_142supercontigscaffold_142:921625..924014 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.00341076	0	0	0	0	0	0	0	0	0	0	0	0	0.808142	1.10519	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048331 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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