TCONS_00048325 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048325
Unique NameTCONS_00048325
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1396

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048325 ID=TCONS_00048325|Name=TCONS_00048325|organism=Clytia hemisphaerica|type=transcript|length=1396bp
AATTGAAAAACTCATAGAGAAGGAAAGGGCAAGATTACCAAAAATGTATT
ATTGTTGGATACTGATTTCTTTGATAGGACTTGCGCAATGTGACCGTTGT
CAGTACAGTTTGGACTTCCAACAATACGAAGGGTCCACTCACAATGATTA
CGAACATATTACATCTGACGAGTGTATGCAAAAATGCGAAGAGGACGCCG
ATTGCATTGTGGGAAATTGGTTCCCAAAAGATGATCCCTGGGAAGAGAGA
GATCATTCACTTTGTCGTTTATTCAAAAAGAGTGATCACACTTTGAAGTT
TTCTGATGATGGTGATGAAAATACGGAAGCCAAACTGATCCGGTGTTCTA
AGAAAGatgaCATTGATGATATTGAGCGATGTTTTCTGGATGAACGATTC
ACACGACATTGCGGAGCAGCTTTACGATACAGTTACGGCAAGTCGTATGA
AAATTGTCGCCAGGAGTGTAACGACCGTGCCGATTGCCAAATTGCACACT
GGCACCCGCCCTATCAAATCTGGGATGACGAGGCTCGATCTGTTTGCTTc
ttattttctgaaaatgctgaACGGTGCGATTGGGGTGGAGCAGAATTGAT
TTCATACCACCCTGGTGCTCAAATGATCCGatgcaaagaaaaaaTTGACA
CGGAGATACGATGTCATTTCAGCGAAGATCTTCACCGACAATGTGGAGAA
TATCACAGTTTGTTGTACGCCTTGACAGCTGAACAATGTCTTCAAAGATG
TGACGAGTCTGCCAACTGTATCACAGgtCACTGGCACCCTCCTCGTCAGA
TTTGGAGTGACGAGGCGCGAACAGTATGTTTTTTGTTCAAGAGAGACGAT
ATTAATTTACACCCTTGTCCATGGGGCGACGAAGCCAAGAACTCAGCACA
CCCAGGAGCCAAGATGATTAGATGTTCAAATAAAAaaaatgggcCAATCG
AGAGATGTACCATGAGCTACGATTTTTTGCGTCATTGTGGAAACGCTTTA
AAATACATCTATGGTCAAAGCCCTGAATACTGCCGACAATGGTGTAATGA
TAATAAGAAGTGCCATGTAGCACACTGGCATCCACCTTATTCAATATGGG
GCGATGAAGCTCGCTCGGTTTGTTTCGTGTTTCCCCATGGGACTCAAAGT
TGTGATTGGGGTGGTGCAGAACTGGGAGATTACCATAAAGGAGCTCACAT
GGTTCGATGCATGTACCAAGAATAGCTTACTAAGCTTTCTGACCAGTATT
TTTTTAAGGCCTGTATATATGGGAAAcgtgaaaaacgttttttctttatt
tttctatttttctagcTTTGTATGTATTTAACTATTTGGTATGCTTCGTA
AGAATTTCAAATATACATTTACCATTTAAAAATTGTTGATCAGCTA
Run BLAST on NCBI

transcript from alignment at scaffold_142:892315..895868+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048325 ID=TCONS_00048325|Name=TCONS_00048325|organism=Clytia hemisphaerica|type=transcript|length=3554bp|location=Sequence derived from alignment at scaffold_142:892315..895868+ (Clytia hemisphaerica)
AATTGAAAAACTCATAGAGAAGGAAAGGGCAAGATTACCAAAAATGTATT
ATTGTTGGATACTGATTTCTTTGATAGGACTTGGTAAGCTTGATTATTCT
CACGTTTTTACAACAAAGAAATATTTGATGTTCACTTCCAGGAAAAAGGC
ATCATATCATGATTTCACGGGTTATTTTTCAAGGGAATTTCGAATATTCT
GCAATAAATTGAATTGTAGAGAGTGAAGTTACTGTTCACAATATGAGAAT
GATATCTTCATAATAAATAAGTGGTTTCGTGAAACTTTTCCATTTCTTTC
ACCTTCAGCGCAATGTGACCGTTGTCAGTACAGTTTGGACTTCCAACAAT
ACGAAGGGTCCACTCACAATGATTACGAACATATTACATCTGACGAGTGT
ATGCAAAAATGCGAAGAGGACGCCGATTGCATTGTGGGAAATTGGTTCCC
AAAAGATGATCCCTGGGAAGAGAGAGATCATTCACTTTGTCGTTTATTCA
AAAAGAGTGATCACACTTTGAAGTTTTCTGATGATGGTGATGAAAATACG
GAAGCCAAACTGATCCGGTGTTCTAAGAAAGGTTTGTAAGATGTGTCCTT
TATACTCCGTTTCCAACCGCTATCAGTGTCAAGCCGGTTTTCCCAAGAAT
TTCTGACGGTCCTTTATGACGACCAACATTGATGTAAATAAAATCTTGGA
TAGGACAGGGCgagagaaaaagtattttatcGATGAACCAAAGAATACTT
CAAGTCCCCGTCCATTTTGATCGCAGAATCTATATACATGACATTTATAT
ATGTAAGAATCTTTATTGTAAAGACCTTATAAAGCTACCagtttgattaa
attttttttttattagatgaCATTGATGATATTGAGCGATGTTTTCTGGA
TGAACGATTCACACGACATTGCGGAGCAGCTTTACGATACAGTTACGGCA
AGTCGTATGAAAATTGTCGCCAGGAGTGTAACGACCGTGCCGATTGCCAA
ATTGCACACTGGCACCCGCCCTATCAAATCTGGGATGACGAGGCTCGATC
TGTTTGCTTcttattttctgaaaatgctgaACGGTGCGATTGGGGTGGAG
CAGAATTGATTTCATACCACCCTGGTGCTCAAATGATCCGatgcaaagaa
aaaagtaagaaaatttttttatgaatttctaTATGTACATTATCTTTTCC
GATTTTTCTGGAAACACAGTACTTCTTTTTAGCTAAGAAAAGTCCATAAA
CTGCAATCGGCGTCGAAATATATTAGCACTTTtaggtattttaacgtttt
tcagaatttaaagatcggGTGAGAGTTGCAacttcagtacttccactttg
tttcattggatttttcgatttggaaGGCGTTAAAGTggtttccaggctat
attctcagccttattagaacatttttgagtatatttttgagtcttaagtc
tcatgttaaaactcagagttaaaactttcCAACCGTACTTTAAAGTAGTT
AAAAATTACTTGCAGTTTTCaaatttgagggaattcccattttgtgccaa
atattacgGTGGGGATTGTGGTcgattttgacgattttgacGCTATACAA
TTATTGGACACAATATATCCAAAACAACTGAAAATGGTCTATATCTCTTC
TTATGGTTTGTAGTTGACACGGAGATACGATGTCATTTCAGCGAAGATCT
TCACCGACAATGTGGAGAATATCACAGTTTGTTGTACGCCTTGACAGCTG
AACAATGTCTTCAAAGATGTGACGAGTCTGCCAACTGTATCACAGgtacg
acgttgtttcaacgtccatttaacgttatatggatgttgtgaatattaga
aaaacgttgaaacgacgttgtgtatCAGCTGGGAGAAAAGAATCATTGAG
ATTTGCACCTTGAAATCGTTGATTGCTAGCATATCATTTAGCTTTTCTTG
TCTCTTTCCACAATCTGCAGCGGGCTCAATCAGACTGATTCAGGACTAAA
GAAATTAAAATCTCACTCCCTCTCCTTCCATCATAGACCCACttggaccc
cagccccactggaaaaataccTTACAATCTCATTCCCAGTGGGGaatcga
ctttgatttcatccccattcaaaatttaatgtaaaaaattgcactccaaa
accatccccacggATTTTTTGACttgggaacaatagaatttttatcccat
tgggtttttcttcttttttttctttttttcaccggggctttgagacaggg
gtgtatatatGAAGAATTCTCGCAtaactttgttttgtttttaaggtCAC
TGGCACCCTCCTCGTCAGATTTGGAGTGACGAGGCGCGAACAGTATGTTT
TTTGTTCAAGAGAGACGATATTAATTTACACCCTTGTCCATGGGGCGACG
AAGCCAAGAACTCAGCACACCCAGGAGCCAAGATGATTAGATGTTCAAAT
AAAAGTAAGGAGATGTTTTACCTGTTtttaaaacaacaacaaaaattacc
TTACAGTTATAGAAAATAAggaacatcataagaacattttatttgTAACG
TTTGTTTATAAAGTCTGTTTGCAACGATATTCTTATCGCCACCAATCTTA
TTGGTAGaaaaagatgtcacatgactttccgtggtaaagaatgaaaattg
cattcctttttttttcagaaaatgggcCAATCGAGAGATGTACCATGAGC
TACGATTTTTTGCGTCATTGTGGAAACGCTTTAAAATACATCTATGGTCA
AAGCCCTGAATACTGCCGACAATGGTGTAATGANACAGTATGTTTTTTGT
TCAAGAGAGACGATATTAATTTACACCCTTGTCCATGGGGCGACGAAGCC
AAGAACTCAGCACACCCAGGAGCCAAGATGATTAGATGTTCAAATAAAAG
TAAGGAGATGTTTTACCTGTTtttaaaacaacaacaaaaattaccTTACA
GTTATAGAAAATAAggaacatcataagaacatttttgtaaCGTTTGTTTA
TAAAGTCTGTTCGCCACCAATCTTATTGGTAGaaaaagatgtcacatgac
tttccgtggtaaagaatgaaaattgcattcctttttttttcagaaaatgg
gcCAATCGAGAGATGTACCATGAGCTACGATTTTTTGCGTCATTGTGGAA
ACGCTTTAAAATACATCTATGGTCAAAGCCCTGAATACTGCCGACAATGG
TGTAATGATAATAAGAAGTGCCATGTAGCACACTGGCATCCACCTTATTC
AATATGGGGCGATGAAGCTCGCTCGGTTTGTTTCGTGTTTCCCCATGGGA
CTCAAAGTTGTGATTGGGGTGGTGCAGAACTGGGAGATTACCATAAAGGA
GCTCACATGGTTCGATGCATGTACCAAGAATAGCTTACTAAGCTTTCTGA
CCAGTATTTTTTTAAGGCCTGTATATATGGGAAAcgtgaaaaacgttttt
tctttatttttctatttttctagcTTTGTATGTATTTAACTATTTGGTAT
GCTTCGTAAGAATTTCAAATATACATTTACCATTTAAAAATTGTTGATCA
GCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030756XLOC_030756Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048325-exon-scaffold_142-1491911889:892315..892397TCONS_00048325-exon-scaffold_142-1491911889:892315..892397Clytia hemisphaericaexon
TCONS_00048325-exon-scaffold_142-1510915933:892315..892397TCONS_00048325-exon-scaffold_142-1510915933:892315..892397Clytia hemisphaericaexon
TCONS_00048325-exon-scaffold_142-1575043694:892315..892397TCONS_00048325-exon-scaffold_142-1575043694:892315..892397Clytia hemisphaericaexon
TCONS_00048325-exon-scaffold_142-1491911889:892623..892895TCONS_00048325-exon-scaffold_142-1491911889:892623..892895Clytia hemisphaericaexon
TCONS_00048325-exon-scaffold_142-1510915933:892623..892895TCONS_00048325-exon-scaffold_142-1510915933:892623..892895Clytia hemisphaericaexon
TCONS_00048325-exon-scaffold_142-1575043694:892623..892895TCONS_00048325-exon-scaffold_142-1575043694:892623..892895Clytia hemisphaericaexon
TCONS_00048325-exon-scaffold_142-1491911889:893181..893468TCONS_00048325-exon-scaffold_142-1491911889:893181..893468Clytia hemisphaericaexon
TCONS_00048325-exon-scaffold_142-1510915933:893181..893468TCONS_00048325-exon-scaffold_142-1510915933:893181..893468Clytia hemisphaericaexon
TCONS_00048325-exon-scaffold_142-1575043694:893181..893468TCONS_00048325-exon-scaffold_142-1575043694:893181..893468Clytia hemisphaericaexon
TCONS_00048325-exon-scaffold_142-1491911889:893978..894109TCONS_00048325-exon-scaffold_142-1491911889:893978..894109Clytia hemisphaericaexon
TCONS_00048325-exon-scaffold_142-1510915933:893978..894109TCONS_00048325-exon-scaffold_142-1510915933:893978..894109Clytia hemisphaericaexon
TCONS_00048325-exon-scaffold_142-1575043694:893978..894109TCONS_00048325-exon-scaffold_142-1575043694:893978..894109Clytia hemisphaericaexon
TCONS_00048325-exon-scaffold_142-1491911889:894610..894768TCONS_00048325-exon-scaffold_142-1491911889:894610..894768Clytia hemisphaericaexon
TCONS_00048325-exon-scaffold_142-1510915933:894610..894768TCONS_00048325-exon-scaffold_142-1510915933:894610..894768Clytia hemisphaericaexon
TCONS_00048325-exon-scaffold_142-1575043694:894610..894768TCONS_00048325-exon-scaffold_142-1575043694:894610..894768Clytia hemisphaericaexon
TCONS_00048325-exon-scaffold_142-1491911889:894983..895053TCONS_00048325-exon-scaffold_142-1491911889:894983..895053Clytia hemisphaericaexon
TCONS_00048325-exon-scaffold_142-1510915933:894983..895053TCONS_00048325-exon-scaffold_142-1510915933:894983..895053Clytia hemisphaericaexon
TCONS_00048325-exon-scaffold_142-1575043694:894983..895053TCONS_00048325-exon-scaffold_142-1575043694:894983..895053Clytia hemisphaericaexon
TCONS_00048325-exon-scaffold_142-1491911889:895479..895868TCONS_00048325-exon-scaffold_142-1491911889:895479..895868Clytia hemisphaericaexon
TCONS_00048325-exon-scaffold_142-1510915933:895479..895868TCONS_00048325-exon-scaffold_142-1510915933:895479..895868Clytia hemisphaericaexon
TCONS_00048325-exon-scaffold_142-1575043694:895479..895868TCONS_00048325-exon-scaffold_142-1575043694:895479..895868Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_142supercontigscaffold_142:892315..895868 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.51709	0	0.488253	0.289173	396.125	336.468	318.189	272.299	230.238	385.228	293.099	283.314	0.24901	2.11027	0.720247	0	0.328653	0.295488	0.64665	0.106368	0	0	0.40219	0.368395	0	0.0913725	0.13139	0	0	0.129914
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048325 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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