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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048291 ID=TCONS_00048291|Name=TCONS_00048291|organism=Clytia hemisphaerica|type=transcript|length=335bp
GGACAAAGTGCTGCGTCACACCCTGGTCGATCCTTGTTCCAAGCAGACAT
TGTATTAACACCAGAATTGCGAAAATATTTACGACAGCAAGATAACAGAA
ATCCAACGGGGAAAGTTGCTGACGTGGTGCAGACAAGAAAATGGCCCAAT
GCTGTCGTTCCTTATGTTTTCAAGTCTGGATTTGCTTATGGTGACGTCAC
TCGTCGAGCGATGGCGGATATTGAAAAACATTCGTGTATTCGTTTCAAGA
AGCGAACAAATGAAGCTGGATATATTCAATTCGTCACCAGTAGAGGATGC
TGGTCATCGATTGGATATTACGGTGTGCAACAAGA Run BLAST on NCBI protein sequence of TCONS_00048291-protein >TCONS_00048291-protein ID=TCONS_00048291-protein|Name=TCONS_00048291-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
GQSAASHPGRSLFQADIVLTPELRKYLRQQDNRNPTGKVADVVQTRKWPN
AVVPYVFKSGFAYGDVTRRAMADIEKHSCIRFKKRTNEAGYIQFVTSRGC
WSSIGYYGVQQ Run BLAST on NCBI transcript from alignment at scaffold_142:437096..440197+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048291 ID=TCONS_00048291|Name=TCONS_00048291|organism=Clytia hemisphaerica|type=transcript|length=3102bp|location=Sequence derived from alignment at scaffold_142:437096..440197+ (Clytia hemisphaerica)
GGACAAAGTGCTGCGTCACACCCTGGTAAGTAGAAATAGCAAAAAAAGCT
GCTTTCCCAGTTAGTTATACGATCCCATGATCGTACAAGGATAATGTCCT
CTAAAGGTTCTCAAAGGCCTCGAAAATACTTCAAGATCAAACATCAAAGC
CCTACCCTAATTATTCATAAAAGTTCATAGACAATAATTTGGTATTACTG
AAGGTATTACGCATGGTTTCTTCAGTGCagaatttcattgttttgagTAA
ATCTGTTATCCCTATTACTGCAAGTTTGAAGAtctaaaaaatacataaac
aGGCAATTAACATTTTTCTCTTGACCATTTTAGCAATTAAGTTTAGGCCA
TATCGTGAACTATTTGATTACCCCTTTAACATCGAGACAGATTGTTTCTC
CATCTTAATTCTAAATCCTCCATGACCTTAAGCTTGACGAAAAAATTTCT
GCCTCGATATAAGTGATGGGATTATTTTGTCAATCTGTTACTTAGTAGCA
ATAAAAATCGATTGTACTTTGTAAAATCTGCCCTTAAGATAAACAATTTG
TTTGTTAATTAAAAGTCAAGTGCTTAAACGATGGGTCAGCCATTATTCAA
TTAAAGTAAAAGGTAATGATTATACAAAAAGATCATCGTTtttaattacg
tcatttttgataaattgttatacaaattctgaaaatggaTCCTGATAAAT
CAAAACTGTTAGAGTGAATGATTAATTGATTACGAATAATTCTATCATAT
CCACCTGTTTTACTGCGTATTTGGCATTTTGTTTAATCATTCCGTAAGCT
GGGAACTTCAAACGAGTCTTTTTATAGTTTAATTTGTAACAGCTTTCCAG
TCAAATCAGTCCATATGAAATACTGTATATCTGTCAATCGTCCCCCTTGT
GAACTTTTAAGCTTGACCGTGCACTAAGATAGCGGTGCAATTATCACACC
GGTAATGCCTGACTATACCCCAGAGGCACTGACCTTGGCAGCTGACGAGG
AGCCGTTAGAGTTTGAAAACTCAGATATAAGTGTTttgtaaatttgggac
cctgtcagaacgaaaaaagTTCTTCCATTTTCACCCTAAAAGTGGCAAaa
gtcccccccccctcccGGGTGACTGAGTCATAGAGTTCATAGCatggaaa
gaaaaaatgaatctTTTGTCACAAACTGTGAACtgattttcaattcaaaa
ttcaacTTTCCATACAATTTAGGTCGATCCTTGTTCCAAGCAGACATTGT
ATTAACACCAGAATTGCGAAAATATTTACGACAGCAAGATAACAGAAATC
CAACGGGGAAAGTTGCTGACGTGGTGCAGACAAGAAAATGGCCCAATGCT
GTCGTTCCTTATGTTTTCAAGTCTGGATTTGGTAAGTAAACTGATTCAAG
TAGCAATTAAACTAAAAACATGTTCCATAGGGGAATTCTCCAATCAGCCT
AGTTCACTGACATGAATTGACCGTAGCATAAAGGTAGACCATCCAGCTTG
ATGACTGCCAACTGCTAAGTAAAGAAGTTGAAGAAATTTAAGGTAAGGAA
TGACACCGTCCTCCACAAACTGTGTAGTTAAATGGAAAGGAAACCTTTTA
ATAGCCCTCTACTACACCCCatcgctgggaccccagccccactgtgAAAT
TGGGTAAAAAATTCGTCCCCAGggagaaaataccctggaatttcagccca
acttggaaattgactttgattttatctccacttgaaattcaatgtttaaa
aattgcactctaaaaccatccaCACTGGATTTTTGAGCCTTGGAACAAAG
TAATTGCtctccccattgggatttcaataggactTTGTATCCTCGCCGAT
ATGAAGTTCCactgggctgtgagacaggggtgttctacTAAAGGGATGTA
CAGCAGGACTGTTTTATCCAACTTTAGAATCTTTAGAAATATCAACATTA
TACTATGTTTTCTACACAGCTTATGGTGACGTCACTCGTCGAGCGATGGC
GGATATTGAAAAACATTCGTGTATTCGTTTCAAGAAGCGAACAAATGAAG
CTGGATATATTCAATTCGTCACCAGTAGAGGGTATGTAAGAAAGCTTTTG
AATCCTGAATTATTATTTTCAGGTTATATTTTTGGGTTGAAAAGTGTAAA
AACAAAGCTTCTCCTTATTTGAAACCAGCATTTTGGATAGCTTTTATTGG
AAGAGTGTATTTGATAATTCTGGGTGtgacccattgagtttaaagcccga
agggctagagttcaatctctaacctttttcaggcaagaaaaagtgaagcc
tttgtttacgattgatatttttttagaaatttagcggttaattttagttt
caatctgtcatttgtgtaaaaaccaggcgagccgctcaaggcagcgcaac
tttggtagaatttgttggcttcaaatcctaccaaggagattgacttttag
ccctttgggcttatacttcattggtgtGACCTACTATTCATGATAATTGC
AATGTGTTCATAACNAGAATCTTTAGAAATATCAACATTATACTATGTTT
TCTACACAGCTTATGGTGATGTCACTCGTCGAGCGATGGCGGATATTGAA
AAACATTCGTGTATTCGTTTCAAGAAGCGAACAAATGAAGCTGGATATAT
TCAATTCGTCACCAGTAGAGGGTATGTAAGAAAGCTTTTGAATCCTGAAT
TATTATTTTCAGGTTATATTTTTGGGTTGAAAAGTGTAAAAACAAAGCTT
CTCCTTATTTGAAACCAGCATTTTGGATAGCTTTTATTGGAAGAGTGTAT
TTGATAACTCTGGGTGtgacccattgagtttaaagcccgaagggctagag
ttcaatctcttaTACACCTGACATAGATTAAGGGGACCCCCGGGAGAGTG
TTTGGTTAAGTCCTGTACGGGTGCCAAAAACCCCCGTAGCGCtgtttctt
caacttttcaggacttcggaccccttttttcggaatcttcACCCNAATat
cgaattttttgaaaattaacagcctttaattaaaattgatttattgTATT
TATATTATCATAGATGCTGGTCATCGATTGGATATTACGGTGTGCAACAA
GA Coding sequence (CDS) from alignment at scaffold_142:437096..440197+ >TCONS_00048291 ID=TCONS_00048291|Name=TCONS_00048291|organism=Clytia hemisphaerica|type=CDS|length=1332bp|location=Sequence derived from alignment at scaffold_142:437096..440197+ (Clytia hemisphaerica)
GGACAAAGTGCTGCGTCACACCCTGGTCGATCCTTGTTCCAAGCAGACAT
TGTATTAACACCAGAATTGCGAAAATATTTACGACAGCAAGATAACAGAA
ATCCAACGGGGAAAGTTGCTGACGTGGTGCAGACAAGAAAATGGCCCAAT
GCTGTCGTTCCTTATGTTTTCAAGTCTGGATTTGCTTATGGTGACGTCAC
TCGTCGAGCGATGGCGGATATTGAAAAACATTCGTGTATTCGTTTCAAGA
AGCGAACAAATGAAGCTGGATATATTCAATTCGTCACCAGTAGAGGATGC
TGGTCATCGATTGGATATTACGGTGTGCAACAAGGACAAAGTGCTGCGTC
ACACCCTGGTCGATCCTTGTTCCAAGCAGACATTGTATTAACACCAGAAT
TGCGAAAATATTTACGACAGCAAGATAACAGAAATCCAACGGGGAAAGTT
GCTGACGTGGTGCAGACAAGAAAATGGCCCAATGCTGTCGTTCCTTATGT
TTTCAAGTCTGGATTTGCTTATGGTGACGTCACTCGTCGAGCGATGGCGG
ATATTGAAAAACATTCGTGTATTCGTTTCAAGAAGCGAACAAATGAAGCT
GGATATATTCAATTCGTCACCAGTAGAGGATGCTGGTCATCGATTGGATA
TTACGGTGTGCAACAAGGACAAAGTGCTGCGTCACACCCTGGTCGATCCT
TGTTCCAAGCAGACATTGTATTAACACCAGAATTGCGAAAATATTTACGA
CAGCAAGATAACAGAAATCCAACGGGGAAAGTTGCTGACGTGGTGCAGAC
AAGAAAATGGCCCAATGCTGTCGTTCCTTATGTTTTCAAGTCTGGATTTG
CTTATGGTGACGTCACTCGTCGAGCGATGGCGGATATTGAAAAACATTCG
TGTATTCGTTTCAAGAAGCGAACAAATGAAGCTGGATATATTCAATTCGT
CACCAGTAGAGGATGCTGGTCATCGATTGGATATTACGGTGTGCAACAAG
GACAAAGTGCTGCGTCACACCCTGGTCGATCCTTGTTCCAAGCAGACATT
GTATTAACACCAGAATTGCGAAAATATTTACGACAGCAAGATAACAGAAA
TCCAACGGGGAAAGTTGCTGACGTGGTGCAGACAAGAAAATGGCCCAATG
CTGTCGTTCCTTATGTTTTCAAGTCTGGATTTGCTTATGGTGACGTCACT
CGTCGAGCGATGGCGGATATTGAAAAACATTCGTGTATTCGTTTCAAGAA
GCGAACAAATGAAGCTGGATATATTCAATTCGTCACCAGTAGAGGATGCT
GGTCATCGATTGGATATTACGGTGTGCAACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048291-exon-scaffold_142-1491911889:437096..437120 | TCONS_00048291-exon-scaffold_142-1491911889:437096..437120 | Clytia hemisphaerica | exon |
| TCONS_00048291-exon-scaffold_142-1510915933:437096..437120 | TCONS_00048291-exon-scaffold_142-1510915933:437096..437120 | Clytia hemisphaerica | exon |
| TCONS_00048291-exon-scaffold_142-1575043694:437096..437120 | TCONS_00048291-exon-scaffold_142-1575043694:437096..437120 | Clytia hemisphaerica | exon |
| TCONS_00048291-exon-scaffold_142-1491911889:438318..438476 | TCONS_00048291-exon-scaffold_142-1491911889:438318..438476 | Clytia hemisphaerica | exon |
| TCONS_00048291-exon-scaffold_142-1510915933:438318..438476 | TCONS_00048291-exon-scaffold_142-1510915933:438318..438476 | Clytia hemisphaerica | exon |
| TCONS_00048291-exon-scaffold_142-1575043694:438318..438476 | TCONS_00048291-exon-scaffold_142-1575043694:438318..438476 | Clytia hemisphaerica | exon |
| TCONS_00048291-exon-scaffold_142-1491911889:439065..439176 | TCONS_00048291-exon-scaffold_142-1491911889:439065..439176 | Clytia hemisphaerica | exon |
| TCONS_00048291-exon-scaffold_142-1510915933:439065..439176 | TCONS_00048291-exon-scaffold_142-1510915933:439065..439176 | Clytia hemisphaerica | exon |
| TCONS_00048291-exon-scaffold_142-1575043694:439065..439176 | TCONS_00048291-exon-scaffold_142-1575043694:439065..439176 | Clytia hemisphaerica | exon |
| TCONS_00048291-exon-scaffold_142-1491911889:440159..440197 | TCONS_00048291-exon-scaffold_142-1491911889:440159..440197 | Clytia hemisphaerica | exon |
| TCONS_00048291-exon-scaffold_142-1510915933:440159..440197 | TCONS_00048291-exon-scaffold_142-1510915933:440159..440197 | Clytia hemisphaerica | exon |
| TCONS_00048291-exon-scaffold_142-1575043694:440159..440197 | TCONS_00048291-exon-scaffold_142-1575043694:440159..440197 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_142 | supercontig | scaffold_142:437096..440197 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004222 | metalloendopeptidase activity |
| GO:0008237 | metallopeptidase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006508 | proteolysis |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006508 |
proteolysis |
| molecular_function |
GO:0004222 |
metalloendopeptidase activity |
| molecular_function |
GO:0008237 |
metallopeptidase activity |
Blast
The following BLAST results are available for this feature:
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