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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048284 ID=TCONS_00048284|Name=TCONS_00048284|organism=Clytia hemisphaerica|type=transcript|length=2334bp
GAAAATGTGTCTTGGGTTTGTAGCATTGCGATCTCAAATTTCCCAGGGCT
TCTGTAGACTATGGTAGAAAACACTGTTGATTGTATTTTAGCCACGGGTT
TTCGCGGAAATGATATTTCGCATAATTAAACAGATCTGTTAATTTATTAC
TTCAATGTTAAGATAAGACGGGGGTTATATGCTTGCTTTTTCACTAAGAT
AGTTCTTCCAAACTGATTAACAATTGCCCTCGGTTCGATACTTTCACATG
GCATACAAGATGGTAGCCCAAAACGAAagtagaaaatcaaaacaaagtgc
CATGTTCATGAACGACCAACACCTGAATGCTGAATACAGTAAACAGAATT
AGACTGGAGGACTAATTTGGAaggaaagaagtcattgcacaACTGAAATC
AATTTATTATGGATACTGAATCAATTATCAtcaaattgtttgaaattgaa
gCCATCAAATTTGGAGAGTTCAAGTTGAAAACTGGCATTCTCTCCCCAAT
TTACATCAATTTGAGGGTTATAATTGGCTACCCAAAACTTCTCCGGCAAC
TCAGTGAGCTTCTCTATAAATCTGCATCTGATGgtTCATCTTTTGATTTG
ACATGTGGTGTCCCATATACAGCACTTCCATTGGCAACATGCATGACTCT
AGATCATGACATCCCAATGGTTATTCGTCGACGAGAAGCAAAAGATTATG
GCACCAGACAGATGATTGAAGGTGTTTACAAATCTGGCGATGTTTGTTTG
ATTGTGGAAGACGTAGTCACTAGTGGTGGAAGTGTATTAGAGACTGCCAA
AGAGCTGAATAATGTCGATCTTATAGTCAAAGatgCTGTTGTTTTACTCG
ACCGATGCCAGGGTGGTAaagaacggcttcaagaaaatGGTATCAAACTT
CATAGTGTGATGAAATTAGATCAAGTTCTTGAAACATTgagaaaacataa
caaaatagATCAAACACTTTACAACACAGTAAAGCAATTTTTAACAACAA
ACCAATTTCAACCAGCTAAAAAGGACACTCCCGAAACCTTATCCTATTCT
GCTAGAAAGGATCTCGTTAAAAACACAGTTGCCAAGCGTATCTTAGACAT
CATGGAGACAAAAAAGACAAATCTTGCTTTTTCAGCTGATATTACAAACT
GCTCAGAACTTTTAAAAATGGTTGATTTGGTTGGTCCTCATTGTTGTATG
GTGAAAACACACGTCGATATTTTAGATGATTTCAATGAAGAATTCGTTGC
CAAACTAAAAGAACTTTCTCAGAAACATAACTTCATCATTTTTGAAGATC
GCAAATTTGCTGATATAGGTAATACAGTGAAAAATCAATTCTCAAAAGGT
GTTTATAAGATCAATGATTGGGCTGACTTAACTAATGCACATGCTGTCCC
TGGTCAAGGAGTCATTGATGGTCTTGAaagctgtactgaaaatatgtCAA
GGGCGTGCCTCCTTATAGCTCAGATGAGTTCTGCTGGTGCTTTGACTGAT
TCCAAATACATTAAATCAACTGTTGAGATGgctaagaaaaaaaatgatta
tgTGATTGGCTTTATATCTACTTCTCAAGTTTGTACTGATGATCCTCGGT
ACTTGCATTTCACACCTGGAGTCAGCTTGCAGTCTAGTGGTGATAGCCTC
GGTCAGCAATACACGAGTCCTGAAGAAGTGATCAGAAACCGtaattgtga
cgtcatcattgtTGGGCGTGGTATTTACAAAGCTGAAGATCCGGTTGAGG
CAGCCAAAGCTTACCAGACAGCTGGATACCAAGCTTATTTGGATAAATTA
GATAGAATGTTGAATGAAGAATAATGTTAAACATTAAATTATCTGGACAA
CTTTACCTGTATTCTACAGCACAATAAGCTATCATATAGAATACTTGTAT
AACTGATTATAGAGGACTTGTGTTTAAACGCTATCTGCGATGAATGAATG
AAGAATGATTTTAAACATGGTGTTAGAACTGGATAATTTCGCGTATATTT
AGGAGCGCgataatataaataaaagaacACAGTTATTGTGCTGTGCTAAA
CCGTATGGTTATGTGCGCATGTCAGTAATTCAAAAAGTGCCTGGTAATTT
TCAGGCTTTTGCTTATGGAATCTTTTATTGAAAACGGAaatttttatcag
aaaaagtgaaaataggATAAATAGgttaatgaaaaatattttatattatt
tttaatattGGGTGTAAGTATTTGTTTATGACTAATTtgagtgaaaaatt
ttgaagcatttGTTTAACACTCTTCCGTTTTACATTTTAAGCTGCATTTT
TTAAATTACGGGATAACACAAAACCTGTAAATTC Run BLAST on NCBI protein sequence of TCONS_00048284-protein >TCONS_00048284-protein ID=TCONS_00048284-protein|Name=TCONS_00048284-protein|organism=Clytia hemisphaerica|type=polypeptide|length=471bp
MDTESIIIKLFEIEAIKFGEFKLKTGILSPIYINLRVIIGYPKLLRQLSE
LLYKSASDGSSFDLTCGVPYTALPLATCMTLDHDIPMVIRRREAKDYGTR
QMIEGVYKSGDVCLIVEDVVTSGGSVLETAKELNNVDLIVKDAVVLLDRC
QGGKERLQENGIKLHSVMKLDQVLETLRKHNKIDQTLYNTVKQFLTTNQF
QPAKKDTPETLSYSARKDLVKNTVAKRILDIMETKKTNLAFSADITNCSE
LLKMVDLVGPHCCMVKTHVDILDDFNEEFVAKLKELSQKHNFIIFEDRKF
ADIGNTVKNQFSKGVYKINDWADLTNAHAVPGQGVIDGLESCTENMSRAC
LLIAQMSSAGALTDSKYIKSTVEMAKKKNDYVIGFISTSQVCTDDPRYLH
FTPGVSLQSSGDSLGQQYTSPEEVIRNRNCDVIIVGRGIYKAEDPVEAAK
AYQTAGYQAYLDKLDRMLNEE Run BLAST on NCBI transcript from alignment at scaffold_142:257871..269211+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048284 ID=TCONS_00048284|Name=TCONS_00048284|organism=Clytia hemisphaerica|type=transcript|length=11341bp|location=Sequence derived from alignment at scaffold_142:257871..269211+ (Clytia hemisphaerica)
GAAAATGTGTCTTGGGTTTGTAGCATTGCGATCTCAAATTTCCCAGGGCT
TCTGTAGACTATGGTAGAAAACACTGTTGATTGTATTTTAGCCACGGGTT
TTCGCGGAAATGATATTTCGCATAATTAAACAGATCTGTTAATTTATTAC
TTCAATGTTAAGATAAGACGGGGGTTATATGCTTGCTTTTTCACTAAGAT
AGTTCTTCCAAACTGATTAACAATTGCCCTCGGTTCGATACTTTCACATG
GCATACAAGATGGTAGCCCAAAACGAAagtagaaaatcaaaacaaagtgc
CATGTTCATGAACGACCAACACCTGAATGCTGAATACAGTAAACAGAATT
AGACTGGAGGACTAATTTGGAaggaaagaagtcattgcacaACTGAAATC
AATTTATTATGGATACTGAATCAATTATCAtcaaattgtttgaaattgaa
gCCATCAAATTTGGAGAGTTCAAGTTGAAAACTGGCATTCTCTCCCCAAT
TTACATCAATTTGAGGGTTATAATTGGCTACCCAAAACTTCTCCGGCAAC
TCAGTGAGCTTCTCTATAAATCTGCATCTGATGGTAAGagcttttagaat
ttttggacTTACCTCAGAGGTCATTTAAATTAAACTGTGTccttctgtct
gtctgtcagtcaggcacatcctggcaaatgaacggggtgagcatttgcat
ggggtattcgtcatccagtttaaatgagataggacgtctcaggctaaaag
tgtgaaaatgaataaaaatgaacttcaaactgaaaaagggaaaaagggaa
gaaaactgggaactttattttttcgttaaaagtttcttcagtCTTCGAAg
gcaaaattgacccatggaaaaaaaatttcatctatgcagttctttgaaat
gaagcaaaatatttccaacccggttcaattaaactgggtattcggcgcta
ttacgtcactttcgttttcgaccccgttcatttgccaatggtcgcaagtg
aaaaataccccgttcatttgtcaggatgtgcctgactgtctgTCTGATGC
AAGCTTTTCTCAAAATTGGCTTGTTTGattcttctattttttttgcacaa
tgatgatatgatgcaaaatgataatgccCAAATCATGGCCCAGTCCCAGT
Ccaattttcaagaaaactttttcctccgaaaatgtcaaaaatatgccgta
aagattttcattgatttttccttatttctttttttttttgacacaaaaac
attattgatacaATGCCCACCACTCATCAACTCaccaagcatgattcaat
tgtcaataaaattggtttttgaagccagaactttttaaaaattgccggaa
cagcTGAGCTGAATCATCAGAAAAACAGTTTCTCTTGAAactctcgagct
gtactttattttttttcatgaaattttacaCACTCGTGCAAAAATAGCAA
TAacaaaaatgtgacggagcctgatctataaaataaaatttccagTAACC
GGAAAAACtgacattttctcaagatttcattactagtttttttctgaatt
tatgCCAGAACATGCAATGATGATGCAATGAAGTGTGCATTTACAAGAGA
TTTGCCATACCAAGTAATGCAATAAGACATCACTGGCCAGCAATTTTTTA
AGCACTTTGAGCTGGGACCGTTTTTGTAAGTTTCAAAAACTCAATCTTAG
ATTGAGTATTTTGTTCGGTATACGGAcataaaaaagttcttaaaaaatcC
CTGCTGTTAATTTGAcctttaaaatcaaaaacaatgGGAATTGGATGGAA
TGGGGGTTTCAAGCAGAAAACAGCCAATTTTTATGCATGATTAATCATAT
TTTCTCAACATGTGCaccaataaaatttattcttttcaaatatacatcaa
attcttttataaacagctttttacaaaatttagtTTTGCACCACCAATTT
CCTCAAGTTCTACAAATATAATAATCAgctttttacaaaataaaaataaa
cagctttttacaaaatttagtTTTGCACCACCAATTTCCTCAAGTTCTAC
AAATATAATAATCAAATAGTTATTTAGGCAATCATGACAGGAgctaaaac
tcgtgaccacaaccttaaaaataaattttttgaagaaaatgaaaaaactc
aaGTGAGTttacggcatgtccaaagaaaaagtgaaccagttccactcact
ttaaaaatatcaaacatAGTTGGAAAGAAGCGCCTTGTGATGTAGATCAA
CATGAtgggtgttagaaaaatttaacttgaggctataagaagttatagcc
caaaaacctgtattatgatgtcataaacattacataacattacgtcataa
aactaaaaatttgaatatctcgtgAACTAATAGTCATATaaatgtcaaat
tttgaccacaaatagataTTGATATAAGAAAATTTCtgagttaaaaatct
tttgaaaaaaatgatgacgtcatttcttatagccaaaaatcgaaaatggc
ttaaaaatgctgacgtcatcatttttcaggagattttgaaaattttactt
ctagAGAATCACGATATACttgttctgtcaaaatttcatattgatatcat
taatagtttatgagttatttaaattttaagtttcgtgacgtaatgttacg
taatgttttatttatgttttatcAATCAATAAGCCATgccaacatttttt
aattttgaaaacacTAATAAAATACTAAGCTTACCCTGTGTATGTAGGTT
GAACATTATAGGCTGTTCAAATAGTTATTCCAGAGAGATAATCTTCCAGA
TTCTTCTTCAGCAAGGTTTTTATACCTTAGGCTGTTTTCTGCCATTCCTA
ATATTCTGTATAAACTTCTGTTATGCGCAGATATGTTATTATTTTgtgca
gatatgtaatttctgcgcaaatatgtaattattttgcgcatgtaatttcg
agctgcgcaaATATGCGTAACTAGCTGGTActcggcgtcgcacgccggtt
aagctgtagctgaacgcactaaaagtcctttggatgttgaagctggctta
aaaaaaacgatcaaatgaataaaaagatatcttcaaagtccccccccccc
tggagatctttttctcgcttcgtTCGCATTAAATACGACGTccagacata
ttatataccaatcgacgcgttttttgacgtagattaagaaaaaggtcagt
aacTATATCtgaaatttgataataaaaagttaaaagcttccgaagttttg
atgatgtcatatttacactttctttaggatcgattttctcgagttaggtt
gAAAAATCACAtatatccacttaaaagtcttctatatcaatttttgagag
cttttgaatggcggtcttagatttcaattttgataagtttgaatttattg
gttttttttttcgtttcggacaggtaaaattgacgttacggacataaagg
aaaagcgttcaaactttttatagcaaaattttcagatatggttactgacc
attttcttaatccacgttaaaaaacgcttcgatcggtatataatatgtct
atgtcggttctcaaaattttttcagttagcctatgggcacgcatgacgtc
atcaggtcctaaaatattaccggacacgtccggtcaataagtcaattcta
aattgctttttttaaaccgttgtcataacttttcaaatttaaacatgtaa
aatgacgtacacagtttttaacagtatcaaccaCTTGATAACactgaatg
tttttatatgaagaaagagatggactaatttcttctcttgctttttatcg
ccctttgaatgctgttattgttcgacaaaccttttaatttttatgttttg
atttacatttgaaatgttcttttctataaaagagacttgttttattttga
aaagaattcgaatgtcattaataaatacgatcgttaaatacatacgaaaa
catttcaaacaaaagaaaagagaaaaacaggatcggacaaagctgggcag
aaattaaaattactaaatgtagatgggactcagatttcaaaacaaaggct
gaataaagtctaaacaaggctctatccgatctgtcaatcaatacaaactt
atcgagaacaaaacattgcttgcgaaatcttttgcaaatggcgtgaatcc
aatagaacagatttgtggagcaagagactaaaagtcataattctaaaaca
cagacaaagcgaaaacgaaagtggtgacacacagacacacaaagcaccgc
tattaaGGTATGTGTTCACCTTCCTTGACACATTCTCTTTAATTGATCAT
ATCTTTAGAACAACAAATTTTTAtatatcaaaagtatatattttctgaaa
gccaataatattctctttctaatggtaaaagtttcagctgaatttaaaaa
actgggcaggatataattaagaTCATacgaattttaaccttacctacttt
aaagaagttaaagtcacccatagcttttgaattttgaaaaaataatttcg
atactatgttcccaatagattgaactaaaaaagtgtcttgggattttttt
tggaattgactttacctagtatgaacccccccccttttttaaggggggga
tccgagttttgaaggaaggctttataggggggatgggcaattttccagtt
aaaatggggggtttgagcttatagGGGGGGGGGCAAATAAAAATGGGGGG
ATAGTaatgttttggttaaaaaattttttttttatgttatatgttgattt
aagtcaataaaatttaatatcacATAATTTCGACTTATCTGATTTATTCT
CACTACACTCTGTTTTGAATCAGATTttgttttccttgttttttaactat
tgccaataaaaatgtttgaaattcatcaaaattcttccccaatactggga
gtacaaattatatgctgggggctcggacccctgtaaatggtgcgggatca
aaaaattttaaaaataggggggatacctttataggggggatgaaatatta
atgggggggttcagacccctctgcacactatgctTTAACTCTTTAACCCT
ATttatactaggcttttaggggcggttcagaactaggggggggcttttcc
tgtaccaccccttaactttttatctagtgggtctttttggatgaaatttg
gcacacaagatccttgtcacgtaaggtaacttttgacaaaaatttttttt
gatgacgtcactcatcatgcccaaagtgagcaaaaaccgaaattttcctt
tgttcttataaatagctattgtattctaacaaaggctttagaaaaaagtt
gcctgagtttaaaatgcttattttatcctaaatattcaataaattacggt
ttagNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNattta
cagaaaatttcacggcaaaagctctattatttcaggagctattaccaata
gtttgacttccgaacagaaagagcccccccctagtacgaatagggttaaa
tcctaaattctgtaaaaatattgataaaaaagtaaatttatatgtgattt
tctgtaaattgaggaaaaacaactcggttagcaataaaatcctaagatac
tttttaagtttgatcttttgggaatctcataaaaaaagaatgaagtcgat
atctaaatgctatgggtgactttaacttcgttaaaagtagtatggtgtgg
taaaatttcgtttttttctacatcaatttgaaatttttaacgagatgatt
ggattggaaatgtctggaaatgtgtcaaaaatattactattcaatagagg
tgagaataaacattagctgaattctctcttttgtctttgttgtttccgaa
agagacaattatttgagtaaataccttaaggggattaatttttgtgGGGA
TTATATTTCccgaatttcgcgagtttttccgaaatttgcgaaatataatc
cctgcgaaaattttaaaaacctttggatTCGCGAAATTCGCTAAATATAA
TCCTcgcaaaaattaagattttttagacataatttccctttgttttcaga
aaaattataCCTATTAAAGACATATCAATCGGTACGACAGAGAGTTTTCA
TCAACAATGTTTGTTGTTTCTTTAGACAAAAGCAAGTTTTTTATTGGTCT
ACTGTTcgattttttagttttgaacTTTCGAAAAAGCCCACTTCTCgcaa
aactcgcgaaatttaatcctcgcgaaaatttagaattcccgtcttcgcga
aaataagtcaaaaaattgtctcgcgaaaataagttaccgcaaaaattaat
ccccttaaggtaattcatcataagacgaactttattttgaaatttaaaat
ggttataactctggatcaaaaaaagattttaagatcgcaattttaccaaa
atgaaatccagtaacttttcatccactttgactgaaaatttttttttttg
acaaaaaaattggaaaaaaggtgtacacataccttaatatatagattaaa
tttctgcgcagatatgtaaaacccAATCTTTAGGATTTAGGGTTTTTCTg
ggattttcttttaatttgttcGATTTTAATATTAAGTATTCAATCGTTTT
GTTCTTTGATTATGCTTggtgatttttgtttttcttataagaaacagTTT
TGGCAATTGGGAATTGCTGAATTTGGCTTTTCCTATAAGCAtctgcttta
taagaatcaaaacgataactcttgatagacagtggTATACCTTTTGGTAT
TTAGTTctcacaaagtaaacaagggatagCGCAAAAATAttagcatattc
atttttcttataagcaactactttataataatcaaattaaaaacTCTCGC
CTTGATAGAGCGGTTTATACTATTCGGTAattggttcttacaaagtaagt
AAGGAATTGTAAACAatataaacatttttatttttcttagaagcaactat
ttttataagaatcaaatcaaaaactccatGAGTACATCTGTTTTTCCTTT
GAAGCatctatttttgaattttagtatCTTAAATCAATACCAATCTTGCA
AAGTAAACACTTCTTATTGGTACAGTCTGAGAAAAATATATCATAGTGAG
ATCTTGGATAGAATCTCAACTCGAGATTCGCACCTATGTAAACTTTGATG
ATTTTGTAGATATGAAttgcattttttacagtggatTAGAATAAAAACCT
ATTGGCTGTCTTTACCTTTACATGGACAAAATACATGAACAAGTTTATGA
GAAAACTATcaatcttcttcttttcatgGCTCGATCTAcaagtcaaaata
ttttattgaagTATCCAATGAAATAGAGTGGAATTACTAATATTGTGAtt
aaatttaaatatcttttgacACTGATTGTAAAGTTTACCTTAGCTTacat
ttcttttcttatttcttcCTTACAATATTAAACTAAAAGGCGAAACACTC
GACTGTGAGCCATCTAATCTAAAGGGAGATAAGGAgataaaatttattct
tatcaGAATTAGCTTTCTGAAACAGTTCTATCGAAAGAAATAGGAGTTTt
cctaaattttatttttcttacaaacattatctttataagaatttcataag
aataaggatttttaacttttttttccgAGTAGAATTGGCTTTCAGAGAAA
GACAACAAATATTGGTTGCTGTTGGTTGACGACTTATGAATAGGctagtg
ttcttataaagttgatgcttataagaagaATAAATGTTTCTATCTTAAGC
ACAATCCCATCTTTGCTCTGGAActgatcaccgaaagctaataatgaTTG
GGTAAAGAGTTATAAACTGTTTTTATAAAGtcgatgcttataagaaaaat
aaatctttccAATTTAAGCACAATCCCATGTTTGCTCTGAAGGAActgat
caccgaaagctaataatgaTTGGGTAAAGAGTTATGAactatgttcttat
aaagtcgatgcttataagaaaaataaatctttccAATTTAAGCACAATCC
CATGTTTGCTCTGAAAGAACTGATCACTGAAAGCTAATAATGATTCCAAT
TTAAGCATAATCCCATGTTTGCTTTGATGGAACTGAtgaccgaaagctaa
taattgGCTGAAGAGTTATGAatagtgttcttataaagtcgATGCTTATA
AGATATAAAAATTTTACGAAAACCTCTTAAAATAGATTGATACTTCTtgt
attttatgtttttgattatatatttatttatatttttgcttGGTATTTGA
TAGTCCAAAGAAGGTAAAATTATCAAGGGTACCCTTGATTTGAAAGATCG
gcttttacatatctgcgcaagaatttaattacatatttgggcagctcgaa
attacataATCTGCAcagaaattacatatttgcgcaaaaattacatatct
gcgcataacAACTTCAATTTTTTGTTGATAAACAACATGAAGTCCAAATG
AAgtttaaacttaaattttttgaCCATTGTCTAGGGATTCGAATATTTTT
TCCTGTATTTTATACCGTAGGTACTAATTTATGGGAAATGCTCGtggttt
ttcttattttttacaggtttttattattatttttaggtTCATCTTTTGAT
TTGACATGTGGTGTCCCATATACAGCACTTCCATTGGCAACATGCATGAC
TCTAGATCATGACATCCCAATGGTTATTCGTCGACGAGAAGCAAAAGATT
ATGGCACCAGACAGATGATTGAAGGTGTTTACAAATCTGGCGATGTTTGT
TTGATTGTGGAAGACGTAGTCACTAGTGGTGGAAGTGTATTAGAGACTGC
CAAAGAGCTGAATAATGTCGATCTTATAGTCAAAGGTATTTTGTTTTATT
CTGATTTATGTTTACTCGCAAGTGCCTAAGACACATTATGACACAAATGG
TTTTGTTGGTGTGAAAgtactacaatcagtgccataacatattagcactt
ttggctaatttaccatttttgggaaattgaagttcgagcgagaatgtcaa
ctttgggccttcaacttgatttcatccattatttcgatctgggagggatt
tttTGGTTTCTAGGCtgtatttcaagccctactggaccatttttgaagtc
ttaagtctagcgttaaaactcagagttaaaactctacccttcgaacctac
tttagagcacttgcaaatcaattgtggtttcaaaacttcccagtggattt
cccttttgtgccaagtattttgtcaacGATTGTAGCCCTGCTTTTTTCGG
TGTTTTGTGTTTGAGGATAAAATGACAGTATTTTGGTGTCAAAAGTGCTG
AAAAATAAggattttgaatgttttaatgGCAATGTTTATGGAGGATATTT
TTACAATCATTTTGATATAGGACAAAGAGATTCTATTCCTCCTGAGATTA
TTTGCTTCAGATTTGATATGTGATCAATTGCAAATAATTCACATTTTCAT
AGAAATGCTCTACATCATTtgtcatttctttttttttttaatttactgtA
ATATTCATTTTGTTATAACTTAGTTGAATTCAATGTGTTATACTTTTTTG
TGTTGCACCTGGATGatgttttatttgtttattttttagatgCTGTTGTT
TTACTCGACCGATGCCAGGGTGGTAaagaacggcttcaagaaaatGGTAT
CAAACTTCATAGTGTGATGAAATTAGATCAAGTTCTTGAAACATTgagaa
aacataacaaaatagATCAAACACTTTACAACACAGTAAAGCAATTTTTA
ACAACAAACCAATTTCAACCAGCTAAAAAGGACACTCCCGAAACCTTATC
CTATTCTGCTAGAAAGGATCTCGTTAAAAACACAGTTGCCAAGCGTATCT
TAGACATCATGGAGACAAAAAAGACAAATCTTGCTTTTTCAGCTGATATT
ACAAACTGCTCAGAACTTTTAAAAATGGTTGATTTGGTTGGTCCTCATTG
TTGTATGGTGAAAACACACGTCGATATTTTAGATGATTTCAATGAAGAAT
TCGTTGCCAAACTAAAAGAACTTTCTCAGAAACATAACTTCATCATTTTT
GAAGATCGCAAATTTGCTGATATAGGTAATACAGTGAAAAATCAATTCTC
AAAAGGTGTTTATAAGATCAATGATTGGGCTGACTTAACTAATGCACATG
CTGTCCCTGGTCAAGGAGTCATTGATGGTCTTGAaagctgtactgaaaat
atgtCAAGGGCGTGCCTCCTTATAGCTCAGATGAGTTCTGCTGGTGCTTT
GACTGATTCCAAATACATTAAATCAACTGTTGAGATGgctaagaaaaaaa
atgattatgTGATTGGCTTTATATCTACTTCTCAAGTTTGTACTGATGAT
CCTCGGTACTTGCATTTCACACCTGGAGTCAGCTTGCAGTCTAGTGGTGA
TAGCCTCGGTCAGCAATACACGAGTCCTGAAGAAGTGATCAGAAACCGta
attgtgacgtcatcattgtTGGGCGTGGTATTTACAAAGCTGAAGATCCG
GTTGAGGCAGCCAAAGCTTACCAGACAGCTGGATACCAAGCTTATTTGGA
TAAATTAGATAGAATGTTGAATGAAGAATAATGTTAAACATTAAATTATC
TGGACAACTTTACCTGTATTCTACAGCACAATAAGCTATCATATAGAATA
CTTGTATAACTGATTATAGAGGACTTGTGTTTAAACGCTATCTGCGATGA
ATGAATGAAGAATGATTTTAAACATGGTGTTAGAACTGGATAATTTCGCG
TATATTTAGGAGCGCgataatataaataaaagaacACAGTTATTGTGCTG
TGCTAAACCGTATGGTTATGTGCGCATGTCAGTAATTCAAAAAGTGCCTG
GTAATTTTCAGGCTTTTGCTTATGGAATCTTTTATTGAAAACGGAaattt
ttatcagaaaaagtgaaaataggATAAATAGgttaatgaaaaatatttta
tattatttttaatattGGGTGTAAGTATTTGTTTATGACTAATTtgagtg
aaaaattttgaagcatttGTTTAACACTCTTCCGTTTTACATTTTAAGCT
GCATTTTTTAAATTACGGGATAACACAAAACCTGTAAATTC Coding sequence (CDS) from alignment at scaffold_142:257871..269211+ >TCONS_00048284 ID=TCONS_00048284|Name=TCONS_00048284|organism=Clytia hemisphaerica|type=CDS|length=4248bp|location=Sequence derived from alignment at scaffold_142:257871..269211+ (Clytia hemisphaerica)
ATGGATACTGAATCAATTATCAtcaaattgtttgaaattgaagCCATCAA
ATTTGGAGAGTTCAAGTTGAAAACTGGCATTCTCTCCCCAATTTACATCA
ATTTGAGGGTTATAATTGGCTACCCAAAACTTCTCCGGCAACTCAGTGAG
CTTCTCTATAAATCTGCATCTGATGgtTCATCTTTTGATTTGACATGTGG
TGTCCCATATACAGCACTTCCATTGGCAACATGCATGACTCTAGATCATG
ACATCCCAATGGTTATTCGTCGACGAGAAGCAAAAGATTATGGCACCAGA
CAGATGATTGAAGGTGTTTACAAATCTGGCGATGTTTGTTTGATTGTGGA
AGACGTAGTCACTAGTGGTGGAAGTGTATTAGAGACTGCCAAAGAGCTGA
ATAATGTCGATCTTATAGTCAAAGatgCTGTTGTTTTACTCGACCGATGC
CAGGGTGGTAaagaacggcttcaagaaaatGGTATCAAACTTCATAGTGT
GATGAAATTAGATCAAGTTCTTGAAACATTgagaaaacataacaaaatag
ATCAAACACTTTACAACACAGTAAAGCAATTTTTAACAACAAACCAATTT
CAACCAGCTAAAAAGGACACTCCCGAAACCTTATCCTATTCTGCTAGAAA
GGATCTCGTTAAAAACACAGTTGCCAAGCGTATCTTAGACATCATGGAGA
CAAAAAAGACAAATCTTGCTTTTTCAGCTGATATTACAAACTGCTCAGAA
CTTTTAAAAATGGTTGATTTGGTTGGTCCTCATTGTTGTATGGTGAAAAC
ACACGTCGATATTTTAGATGATTTCAATGAAGAATTCGTTGCCAAACTAA
AAGAACTTTCTCAGAAACATAACTTCATCATTTTTGAAGATCGCAAATTT
GCTGATATAGGTAATACAGTGAAAAATCAATTCTCAAAAGGTGTTTATAA
GATCAATGATTGGGCTGACTTAACTAATGCACATGCTGTCCCTGGTCAAG
GAGTCATTGATGGTCTTGAaagctgtactgaaaatatgtCAAGGGCGTGC
CTCCTTATAGCTCAGATGAGTTCTGCTGGTGCTTTGACTGATTCCAAATA
CATTAAATCAACTGTTGAGATGgctaagaaaaaaaatgattatgTGATTG
GCTTTATATCTACTTCTCAAGTTTGTACTGATGATCCTCGGTACTTGCAT
TTCACACCTGGAGTCAGCTTGCAGTCTAGTGGTGATAGCCTCGGTCAGCA
ATACACGAGTCCTGAAGAAGTGATCAGAAACCGtaattgtgacgtcatca
ttgtTGGGCGTGGTATTTACAAAGCTGAAGATCCGGTTGAGGCAGCCAAA
GCTTACCAGACAGCTGGATACCAAGCTTATTTGGATAAATTAGATAGAAT
GTTGAATGAAGAATAAATGGATACTGAATCAATTATCAtcaaattgtttg
aaattgaagCCATCAAATTTGGAGAGTTCAAGTTGAAAACTGGCATTCTC
TCCCCAATTTACATCAATTTGAGGGTTATAATTGGCTACCCAAAACTTCT
CCGGCAACTCAGTGAGCTTCTCTATAAATCTGCATCTGATGgtTCATCTT
TTGATTTGACATGTGGTGTCCCATATACAGCACTTCCATTGGCAACATGC
ATGACTCTAGATCATGACATCCCAATGGTTATTCGTCGACGAGAAGCAAA
AGATTATGGCACCAGACAGATGATTGAAGGTGTTTACAAATCTGGCGATG
TTTGTTTGATTGTGGAAGACGTAGTCACTAGTGGTGGAAGTGTATTAGAG
ACTGCCAAAGAGCTGAATAATGTCGATCTTATAGTCAAAGatgCTGTTGT
TTTACTCGACCGATGCCAGGGTGGTAaagaacggcttcaagaaaatGGTA
TCAAACTTCATAGTGTGATGAAATTAGATCAAGTTCTTGAAACATTgaga
aaacataacaaaatagATCAAACACTTTACAACACAGTAAAGCAATTTTT
AACAACAAACCAATTTCAACCAGCTAAAAAGGACACTCCCGAAACCTTAT
CCTATTCTGCTAGAAAGGATCTCGTTAAAAACACAGTTGCCAAGCGTATC
TTAGACATCATGGAGACAAAAAAGACAAATCTTGCTTTTTCAGCTGATAT
TACAAACTGCTCAGAACTTTTAAAAATGGTTGATTTGGTTGGTCCTCATT
GTTGTATGGTGAAAACACACGTCGATATTTTAGATGATTTCAATGAAGAA
TTCGTTGCCAAACTAAAAGAACTTTCTCAGAAACATAACTTCATCATTTT
TGAAGATCGCAAATTTGCTGATATAGGTAATACAGTGAAAAATCAATTCT
CAAAAGGTGTTTATAAGATCAATGATTGGGCTGACTTAACTAATGCACAT
GCTGTCCCTGGTCAAGGAGTCATTGATGGTCTTGAaagctgtactgaaaa
tatgtCAAGGGCGTGCCTCCTTATAGCTCAGATGAGTTCTGCTGGTGCTT
TGACTGATTCCAAATACATTAAATCAACTGTTGAGATGgctaagaaaaaa
aatgattatgTGATTGGCTTTATATCTACTTCTCAAGTTTGTACTGATGA
TCCTCGGTACTTGCATTTCACACCTGGAGTCAGCTTGCAGTCTAGTGGTG
ATAGCCTCGGTCAGCAATACACGAGTCCTGAAGAAGTGATCAGAAACCGt
aattgtgacgtcatcattgtTGGGCGTGGTATTTACAAAGCTGAAGATCC
GGTTGAGGCAGCCAAAGCTTACCAGACAGCTGGATACCAAGCTTATTTGG
ATAAATTAGATAGAATGTTGAATGAAGAATAAATGGATACTGAATCAATT
ATCAtcaaattgtttgaaattgaagCCATCAAATTTGGAGAGTTCAAGTT
GAAAACTGGCATTCTCTCCCCAATTTACATCAATTTGAGGGTTATAATTG
GCTACCCAAAACTTCTCCGGCAACTCAGTGAGCTTCTCTATAAATCTGCA
TCTGATGgtTCATCTTTTGATTTGACATGTGGTGTCCCATATACAGCACT
TCCATTGGCAACATGCATGACTCTAGATCATGACATCCCAATGGTTATTC
GTCGACGAGAAGCAAAAGATTATGGCACCAGACAGATGATTGAAGGTGTT
TACAAATCTGGCGATGTTTGTTTGATTGTGGAAGACGTAGTCACTAGTGG
TGGAAGTGTATTAGAGACTGCCAAAGAGCTGAATAATGTCGATCTTATAG
TCAAAGatgCTGTTGTTTTACTCGACCGATGCCAGGGTGGTAaagaacgg
cttcaagaaaatGGTATCAAACTTCATAGTGTGATGAAATTAGATCAAGT
TCTTGAAACATTgagaaaacataacaaaatagATCAAACACTTTACAACA
CAGTAAAGCAATTTTTAACAACAAACCAATTTCAACCAGCTAAAAAGGAC
ACTCCCGAAACCTTATCCTATTCTGCTAGAAAGGATCTCGTTAAAAACAC
AGTTGCCAAGCGTATCTTAGACATCATGGAGACAAAAAAGACAAATCTTG
CTTTTTCAGCTGATATTACAAACTGCTCAGAACTTTTAAAAATGGTTGAT
TTGGTTGGTCCTCATTGTTGTATGGTGAAAACACACGTCGATATTTTAGA
TGATTTCAATGAAGAATTCGTTGCCAAACTAAAAGAACTTTCTCAGAAAC
ATAACTTCATCATTTTTGAAGATCGCAAATTTGCTGATATAGGTAATACA
GTGAAAAATCAATTCTCAAAAGGTGTTTATAAGATCAATGATTGGGCTGA
CTTAACTAATGCACATGCTGTCCCTGGTCAAGGAGTCATTGATGGTCTTG
AaagctgtactgaaaatatgtCAAGGGCGTGCCTCCTTATAGCTCAGATG
AGTTCTGCTGGTGCTTTGACTGATTCCAAATACATTAAATCAACTGTTGA
GATGgctaagaaaaaaaatgattatgTGATTGGCTTTATATCTACTTCTC
AAGTTTGTACTGATGATCCTCGGTACTTGCATTTCACACCTGGAGTCAGC
TTGCAGTCTAGTGGTGATAGCCTCGGTCAGCAATACACGAGTCCTGAAGA
AGTGATCAGAAACCGtaattgtgacgtcatcattgtTGGGCGTGGTATTT
ACAAAGCTGAAGATCCGGTTGAGGCAGCCAAAGCTTACCAGACAGCTGGA
TACCAAGCTTATTTGGATAAATTAGATAGAATGTTGAATGAAGAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048284-exon-scaffold_142-1491911889:257871..258453 | TCONS_00048284-exon-scaffold_142-1491911889:257871..258453 | Clytia hemisphaerica | exon |
| TCONS_00048284-exon-scaffold_142-1510915933:257871..258453 | TCONS_00048284-exon-scaffold_142-1510915933:257871..258453 | Clytia hemisphaerica | exon |
| TCONS_00048284-exon-scaffold_142-1575043694:257871..258453 | TCONS_00048284-exon-scaffold_142-1575043694:257871..258453 | Clytia hemisphaerica | exon |
| TCONS_00048284-exon-scaffold_142-1491911889:266707..266955 | TCONS_00048284-exon-scaffold_142-1491911889:266707..266955 | Clytia hemisphaerica | exon |
| TCONS_00048284-exon-scaffold_142-1510915933:266707..266955 | TCONS_00048284-exon-scaffold_142-1510915933:266707..266955 | Clytia hemisphaerica | exon |
| TCONS_00048284-exon-scaffold_142-1575043694:266707..266955 | TCONS_00048284-exon-scaffold_142-1575043694:266707..266955 | Clytia hemisphaerica | exon |
| TCONS_00048284-exon-scaffold_142-1491911889:267710..269211 | TCONS_00048284-exon-scaffold_142-1491911889:267710..269211 | Clytia hemisphaerica | exon |
| TCONS_00048284-exon-scaffold_142-1510915933:267710..269211 | TCONS_00048284-exon-scaffold_142-1510915933:267710..269211 | Clytia hemisphaerica | exon |
| TCONS_00048284-exon-scaffold_142-1575043694:267710..269211 | TCONS_00048284-exon-scaffold_142-1575043694:267710..269211 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_142 | supercontig | scaffold_142:257871..269211 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004590 | orotidine-5'-phosphate decarboxylase activity |
| GO:0004588 | orotate phosphoribosyltransferase activity |
| GO:0003824 | catalytic activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006207 | 'de novo' pyrimidine nucleobase biosynthetic process |
| GO:0009116 | nucleoside metabolic process |
| GO:0044205 | 'de novo' UMP biosynthetic process |
| GO:0006221 | pyrimidine nucleotide biosynthetic process |
| GO:0008152 | metabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006207 |
'de novo' pyrimidine nucleobase biosynthetic process |
| biological_process |
GO:0044205 |
'de novo' UMP biosynthetic process |
| biological_process |
GO:0008152 |
metabolic process |
| biological_process |
GO:0009116 |
nucleoside metabolic process |
| biological_process |
GO:0006221 |
pyrimidine nucleotide biosynthetic process |
| molecular_function |
GO:0003824 |
catalytic activity |
| molecular_function |
GO:0004588 |
orotate phosphoribosyltransferase activity |
| molecular_function |
GO:0004590 |
orotidine-5'-phosphate decarboxylase activity |
Blast
BLAST of TCONS_00048284 vs. Swiss-Prot (Human)
Match: UMPS (Uridine 5'-monophosphate synthase OS=Homo sapiens GN=UMPS PE=1 SV=1) HSP 1 Score: 474.167 bits (1219), Expect = 1.012e-158 Identity = 237/469 (50.53%), Postives = 332/469 (70.79%), Query Frame = 1
Query: 424 IIIKLFEIEAIKFGEFKLKTGILSPIYINLRVIIGYPKLLRQLSELLYKSASD-GSSFDLTCGVPYTALPLATCMTLDHDIPMVIRRREAKDYGTRQMIEGVYKSGDVCLIVEDVVTSGGSVLETAKELNNVDLIVKDAVVLLDRCQGGKERLQENGIKLHSVMKLDQVLETLRKHNKIDQTLYNTVKQFLTTNQFQPAK--------KDTPETLSYSARKDLVK-NTVAKRILDIMETKKTNLAFSADITNCSELLKMVDLVGPHCCMVKTHVDILDDFNEEFVAKLKELSQKHNFIIFEDRKFADIGNTVKNQFSKGVYKINDWADLTNAHAVPGQGVIDGLESCTENMSRACLLIAQMSSAGALTDSKYIKSTVEMAKKKNDYVIGFISTSQVCTDDPRYLHFTPGVXXXXXXXXXXXXYTSPEEVIRNRNCDVIIVGRGIYKAEDPVEAAKAYQTAGYQAYLDKL 1800
++ L++++A KFG+F LK+G+ SPIYI+LR I+ P+LL Q++++L+++A + G SFD CGVPYTALPLAT + + IPM+IRR+E KDYGT++++EG G+ CLI+EDVVTSG SVLET + L L V DA+VLLDR QGGK++LQ +GI+LHSV L ++LE L + K+D VK+F+ N F A K+ P+ LS+ AR +L + + VA ++L +M+ K+TNL SAD++ ELL++ D +GP CM+KTHVDIL+DF + + +L L++ H F+IFEDRKFADIGNTVK Q+ G++KI WADL NAH VPG GV+ GL+ + R CLLIA+MSS G+L Y ++ V MA++ +++V+GFIS S+V P +LH TPGV L++ GD+LGQQY SP+EVI R D+IIVGRGI A D +EAA+ Y+ A ++AYL +L
Sbjct: 11 LVTGLYDVQAFKFGDFVLKSGLSSPIYIDLRGIVSRPRLLSQVADILFQTAQNAGISFDTVCGVPYTALPLATVICSTNQIPMLIRRKETKDYGTKRLVEGTINPGETCLIIEDVVTSGSSVLETVEVLQKEGLKVTDAIVLLDREQGGKDKLQAHGIRLHSVCTLSKMLEILEQQKKVDAETVGRVKRFIQENVFVAANHNGSPLSIKEAPKELSFGARAELPRIHPVASKLLRLMQKKETNLCLSADVSLARELLQLADALGPSICMLKTHVDILNDFTLDVMKELITLAKCHEFLIFEDRKFADIGNTVKKQYEGGIFKIASWADLVNAHVVPGSGVVKGLQEVGLPLHRGCLLIAEMSSTGSLATGDYTRAAVRMAEEHSEFVVGFISGSRVSM-KPEFLHLTPGVQLEAGGDNLGQQYNSPQEVIGKRGSDIIIVGRGIISAADRLEAAEMYRKAAWEAYLSRL 478
The following BLAST results are available for this feature:
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