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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048276 ID=TCONS_00048276|Name=TCONS_00048276|organism=Clytia hemisphaerica|type=transcript|length=1827bp
agatgatgatgaatacATCAGGATTCACAAGTATTCAACACGCAAACAGG
CTAGTCTTTTCAAGTGTACTGGCTAGACCTATGCCTATAGGCGCGAGGAT
GGATGAGGAGCGGCGTTTGGTGGACGGAGGATCAAAGAACAAAAGCTATA
ATGATGATACCAGAATCAAAATTGACGGAGACGATAAAAAGCCGAACGAA
CTGGTCACTTTTAACGTCAGCGGTCGTAAATTCATAACAACCAGCCATAC
GTTATATAATTTCCCCGATTCCCTTATCGGAACAAGTGAAAACCGCGCTA
AATTGAAACGAACCAAAGATGGGGAGATCTTCTTAGATAGACATGCTATC
GTCTTCGAAAGCGTGCTCACGTTTTATCAGACGGGTATTTTCGAACCACC
CTCTCAAgtcaatcaaaatattttcgttgGTGATATCAAATATTATGAAC
TAGTTGAAGAAGCAATGCAGTCTGGATTAAAAGGATTTGATAATAAGGTT
ATACCGATGCCAGAAAGATTAGTACAGCGTAAAATATGGACATTATTGGA
GTACCCTGATTCATCATTCATGGCAAGAATAGTATCCATGTTTTCTCTGC
TGGTTATTATAACTTCAATCGTAACATTCTGTTGGGAAACTGTACCGGAG
TATAATACCAATAAAGTCAATTATGATGACCTATCACCTGGTAAACAGTT
GACTATAAAGATTCTTGACGATATTGAGTTATTCTGTATCGTCTATTTCA
CATTTGAGATTATACTGCGATTCGTATGTTCACCCAAGAAATGGTCATTT
atgaaagatattttgaatATCATTGATATCGTGTCGATTCTACCGTTTTA
TGTGACACTCATATTCAGCATGGAAGGTAGTGTTTCCATATACTTTCTGC
GTgccgttcgattggttcgagtATTTCGGGTCTTTAAATTATCACGACAT
tcgaatgaaatgaaaatattgggTATAGCTGTTAGAGAAAGTGGACGCGA
GCTTGGAGTACTTGTATTCTTTATTTTGTTGGCAGTACTTTTATTCTCAA
GTGCTGTTTATTATGCGGAAGATGGTGTACCAGGCACGAAGTTAGTCTCG
ATTCCAGGAGCTTTTTGGTGGTCTATTGTTACTATGACAACAGTGGGATA
CGGAGACGAAGTTCCACAATCAATTCcTGGTCGTTTGGTCGGTGCAGTGT
GCGCCATGACAGGTATCCTCGTGATTGCAATGCCGATTCCTATCATTGTC
AATAATTTCACACGACAATATCAACGATTGAAACCAGCATCAAAATACTG
GGAAGATTTTCAAGACACGCGGAAATTATCCGGTGAGGGTACGGACGAAA
ACGGAAAAACAGACCGGAAAACTAGTCACGTGATTGGATTATATGAAGTA
GACATTAATAAAAATGAAGCCAAAAATGCAACGGTGGTTAGTAGTAACCA
TAGCAATCATGTAAATGGTAGCACAACCAAAAATAATGGTGACGTCACTG
AAATCGGTTTACCGAATGGGAAGGTTGAAATCGCCCATACAGCGCTTTGA
GAAAAAGTTTTCGGGCTAAAGAGAGCAAAAGAGGGGCCAAAATACTTTTT
ATGGACAATAAGGGTAAAAGACATAGTATTATGGGTACTATTTACCAAAA
TTTggggaaaagtgaaaaatattcaaacTCACGTTCGATATaaagaatat
atttattttgataactttttttataaacatttgaATTGATATATATTcgt
aatctttaaaaaacttttttttcgtttagattttttttggagGAATTGAC
GATGTCAAAACTTTCGACCTCTGCCTG Run BLAST on NCBI transcript from alignment at scaffold_142:179334..190720+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048276 ID=TCONS_00048276|Name=TCONS_00048276|organism=Clytia hemisphaerica|type=transcript|length=11387bp|location=Sequence derived from alignment at scaffold_142:179334..190720+ (Clytia hemisphaerica)
agatgatgatgaatacATCAGGATTCACAAGTATTCAACACGCAAACAGG
CTAGTCTTTTCAAGTGTACTGGCTAGACCTATGCCTAGTAAGTATATTAT
TTTGTTTATACAACTGCCTCTGTTTCGaacctctgtaattcgaatctttc
tgcaaTTCGAACGAAAACATTGGTCACCTCAGCTGGAAAGTAGCGATAAA
TTCTTTCTTGACCCCTCcaagctgacacacaacgttgtttcaacgtttat
ttaacgtccacaacgtccaaataacgttagatgaacgttgaaacaacgtt
gtgtgccagctgggcttgaagatcgaattattGAGAGTCAACTACCTTTG
TACCTGGAATAATTTTTCCCGTCTCTTCATAGAGTCTTAAGCTGTGTTGC
CTCTCTAATACATAGTATATGAATTTATTTGGAAATGACCATTTTGTCCT
TAAATGAACGATAAAGTGGACTTTCTGATGAGTTCTTACTTTGGAGTTGG
CTGCACTTGCTAGAACTAGTTTTGAACTGCCATCAGGTCATATACTGTAT
GCAAACTTCAATGTGactaaaaaaagagaaaaaaaaacatttaaaggctt
GTATAATGGTtacaaaatctttcttttttaaaagctaAGTTTCGCTGTGA
GGAGTGACTCCAGGGGTCGATCCAGCTTTAGGTTTACCAGCTCTGTGTCT
GCGTCTGTCTGTCTCTGTGTTTTTTAGGTCTCGTTTAAGTAAGTCTGTTC
TATGAAACGTCAGGGAGAAAATCTCTGGGAATAATTGTCCTCGAATTTGT
TGCGTGAGCATGTATGGTCAAACctataatttcattttctcttgTTGTTA
TAATATGACAATTAGTGGGCAATGGAATACAAGAAGCCATCCAAATGCCT
CTTGTCTTTTGGAAGTGGTTGCTATAGCAAATAAACTCTCCCATATATTG
ACATTCAAAATAAAGTCTTCAAAAATGATCTCAATTCTATGTATATGCGG
ATGGTTGGTTAAACATAAGGATATATGACCCAAAACACATATAGAACATT
TAAAGCAAACTTTGCGAGTCGTATCGGAGAAAAAACGAGCTCTCATCGGA
CGTTTTTGAACGTACTCAGAAAGATTTTTATTGCAAATTATGAGAGTCTG
TGTGAAGCAGATGCCATATTGATGGTCCAATGTAGAGAGAAATcttaatg
tttttttatgaattttacggtcaatttttttttgtgtagTTGATGTAAAG
AAATGGAAAGGAAATTTTATTATGAAGTTTAAATCGCGTATAAAAAGCAT
TATAAGGGTTTGATTGAAGAAGGATTTCTTTTGCCTGAtttataactttt
tttgggagaagaagaaaacgaatttAAGAAGAAAAGTTCAAGAAGGTGGA
TTTTGTGTAAGATGTTCAAGAGAAAGTGGAGAAGAGGTACTACtaactaa
aaaaaataattctgggGTCATTGAATTTGTTATTTGTTTTCTAAGATACA
TATCAATAATGCTTTTATAGATGGTAAGGTcaacaggcccggcggaagcg
gggagactggggagacttcagcctctccacttttgagcaaatgagatttt
tttctcaaattcttaGCGAGTTTTATCTCATTTTTTGAGCagtcagcctc
cccacttttacggttgctCCACCGGGCTTGAAAGACGTGGTGATTTGCCT
GTTAGTTAATATATTGGTTGTATGGTTGGATTTTTTAtctttatgttttc
tttatGTCTTGCAAAAATCAACAACATATTTTCATCTAAATAAGCTTTAG
TTTAACGAGCCAGTGATATTCGTTGAcaagtcattgcattgatgtTGGAC
AGTAGTGGTTCATGTAACGTTTATGAGAACATTTACATAGATATGTGGAA
TTCGTGTGCAACTAACAACGCCTTAAACAATCTCAGACGTCAATGtaatt
attttaaattattatCTCGATGAACTTTCCATAATACACTTTATCTGATg
atttcaattcatgatattgtGATAATTGTGTTTGCcacaaattttgaatt
caaacaatAAACCTGACCTACCTGACTCATCGAGGTAAAAAAAGGTatcc
tgaccagcggcacatccctGTACCCCTTTTTACCCAAGCACACCCTCCCC
GGATGTGATAGAAGTCTGGAAACACCTATTTACCCTTCCCACAAATCTTC
CAAAGGAAAGTTCTAAACTTGATCCAATTTTCCcacaaacttttttccaa
aaaggaaagaaagcgTCGAACAAACGGTGTAcatttaacatctttttaac
atCCAtgacgttagattaacgttgaaataacgCTTTGGTTTCTGATAAAG
AGTTTACGGGTAGTTGACAGCTAATCAGGATATATAAGAAAGTATCAATT
TCGTCTGATTAGGTTACATGATAGTATCAATAGTATCAATTTCCAAATCT
TTGGTGGGAGGGTCAAGGTATTaagtgaaaactttttaaaaagtataaat
GTCAATAGCTTTTGTGTCAAATTTCTGATAGAAAGATTTTCAATATTGAG
GAATGTtctcaacctcgttccctgcgtattattagcttttttatgcttac
tgatagcgctagataatagggttctctggcgtcaatcagtagcgtaaata
aagcctgggatacacggggacgaggttggaaTGTTCTTAGAGTCTGTCGT
GtaaaataaaaaggaattttgaaGAATTATTCAAAAGTTTGATTCGAGTT
GTTAGTTTGTGGTTTACAATGCGCTTAAAATACGGTAAATAACCATTTAA
AATCTATGATTGTGATTATCACGGAATATGTATTAGAATTCCTGCATGAA
ACTCTCCGCAAAAGCGAATTTTGGCTTTCAGCTCTTTACTTTggctttac
ttttttaattgtGTCAATATCTTATTCTTTTTAAATGCTTTAAGCGTAGT
AGTGAAGCGGTTATAAACCTTGATTCCCCTATGTgaggtcagggttcgat
tcTCACTCGGTGCtatgattcacttggcaagttaATGTACCTTCGCTCGG
GTCGACCCATGCCTTGCGAGGGGAACTGGGTACCGTCACTCTGATAAAAG
AGTATGGGGAGTATGTCAGGCATTTCATGAGGTGTGGTGACGATACTCAT
AGGTTCAACACATGCGAAGATGTATGTCCTCCCGTGTAGTTCGGGTATCG
TCGTCTATACACCAATAACTCTGCCTTGTCGCGAGCGTAGAGTTAGCAGT
GTGTGGTAAGCGTGATAATTTCCTAGGGTAGGTATCTATCCAGGGATAAG
GCCCATTTCGGATAATTTTGAGGATTCGattctctctttttctcttcttt
gaaTGCTTTGGAGAGTTAGACCTCAAACAGCTCCATAATAACTTTTTTAG
GGAACTTTTGATGAGCATTAAGCAGAGATATATATATTAACCCTTGACTT
TGCGCACTGTAGCCGAATGCTCTACCTTTAAACTACGGATTGCTGCACTG
ACAAGAACGTACTCTTTAAGCAAAAATAGGCCCTGGTGGGTTTCAATTTC
CAACATAATTTTGACCCTGACAGAACAAATTTGACAAATCAAgtcaaaaa
agtaaatattttcttccaaTTTATGACAAAAGTTGCTGCAAAGGGACGAT
GACAAGCGAAGTGTTCATGTATTCATATTTTACACTTTAGaatggcacgc
cagtcgggctggaacggtatcaggCGGGAAAAGTGaacgtaggagttagg
taagcgtaaaaagaaattttgttggcggcaagggctgaaagtaGTCTCTC
ACCAACTTTTTCTCGTTCTCCTACGTAGCTCCTATtgtagcaaacgcccg
ccgcccgTCGCCTTTATGTTTCCAccccctctgacatgattaattaacag
actagtttgctagtctaattTTACCTTGATGATCTTTTTACAAATATGTa
aaataatattgaaatttCGCCATAGTAATAGACGGCCAGGAGGTCATTAG
CATTTTCAACAATAACATTTAAATTACCTTCCATTAACGTTCATGATGAT
GCAAAGTAACTTTGATATAACTATCAATTAAAGGGGAATTCTGTGGTTCA
AAAACGAAATCGATTTTAAACCCGCAAGAATCGTGTCTAACTTTTCGACC
GGAATTGGTCacttttctaccatttttgcAACGGACGTGACTCacaaata
gatcttatcggagtttttgatttttcttaaaaagcgATGCATATTGTGGG
ATtatttcgggagtattacaaaaGAATTccagagatttctattgtaatac
tcccgaaacaatcacACAATACatcgtttttttagaaaaatcaaaaactc
cgataagatctattgtgAGCTATTTTGCATTAGAAGTATGAACCGCAAAA
actgtttttgaaaattaataaatacctctacaaaaaaagtcaaataataA
TAGATAGCTTGCGACGGCAACATGGTTTCTGCAGCCTACGGCGATTTTTG
CAAGACATTTGCGTAGTTTTCAATAGTAAAAAGAAGATCGCAAAATAATA
TTTAATTAGCTTGAAAGCAACGTTTCAATGAATAAGGTTCAATCATAATA
ACACCCAGAAAATACCtccaagaaaaattatttcacatTGATGAGTTCAG
TTTTTACAGCTAATTCTCAAAGTTAAATATCCCGACGGGGGAGAAACTGG
GGGCGGAATATGTGTGCAAAGCATGTAGCTACTTCAATGTGACTTTTTTC
TGTGGGATTGATGATGAATTTTGAGAAGTAGAACAGTCGAAAATATAATT
AAACAGTCAAATACACTGGTCTAGTGGAAGGCACTTTTCGTTTTGTTCTC
GTTTAGCATGTATAAATGTGCCGTAACGCGAGGGGTAGCTGCCAAAAATT
CGTCTGTCGTCAAAAAATATCTACCAATACCTTGCTATTAGTTTTTGACG
AAGAACACACCAAGGCTTTGTTAGTCCAACGACGGCTCACGgtccttaac
cctttaagtaccacggccacttttttctaagttttttaaagaaaatcgct
gcACGGActtgcctgaatgatagaaaggtgcccagtggtaaaactccAAA
TTAATTCGgtagaggacagaatcaagtaaaccAGTAGGGCCAattttgga
ggttcttgaatcactcattgaccaaaaatggtcaaaaaacggtcaaaatc
ttaaaaaagtcgatttttgtcaaatctttgcattttttcgactttttggc
ttaaaatctcgctggaaagattcactttaaattttttttcttgaccaTGA
AACCCAACCCAATTCCTACgaattagaccaaaaatgatgatttctaactc
aaactggccATTACAGGAGGATAGCCCATGTCTAGTATACTCATCATTGG
TACTTAATGGGTTAATTGGTTAGTTTATCcggaaataaaaatttaggGGA
TTTCCGCTGGAAATATTGGACCAAACAGTCATCATTATGaatgaattaaa
ttttaaattgcCTCGCAACCAGTGTTCATATGACtttgatacaatttttt
ttaagaaactagttttccCAAGCAGactcaatgtttcttaaaaaatcggc
cttttgagccttaaatgtttctcacatgtttctaaactttttgacataat
cagcctcgtGGAAgtctggattggaaggttcttaaaaaaaaactgaatta
aaaaatttaggcattctgagcctcatgtttcttaaaagtgtttcttgaaa
aaaaaaaacgtgtagttttttttcttaattaatttcttaataataaaatt
ttgcCACAAAACTTTAATCAGTTGTCATCATCTCTATTTGAAGGTTTGGT
AGGGAGAAAGAATTtttcatttgaatattttgaaagattttttgtgACAC
GCGTGGTTTTAACAAACGTAGCGTATAGGGGAGGTTttggatttgttttt
ttttatttgattttcaagaTGCATGCGGGCCAAGCAGCAGGTCAAATTAA
TGTGGGAGAAGTACATATACATCCTGCCGGTAAGACAATAATTTGGATAT
TAGAGATTAAACGTTGTTCAACTATAAATTACTTTGGTTCGATATAACGA
AATGATAAATACAACATCCAAGTTTAAACTTCCTTTGCAATGGCCACTAT
TTTTCTCTCTTACGCGGGAAATGGTGTTATTTCGAGTTTTCTTAGCTGGT
GAGCAAGCGGAACCTACTACATGTTAAGAGAATCATATTTTTAAGCTAAA
CTTAACAGATGCTTGGATCTTAGACAAAATATGATTACGTCAGTTGTATC
ATTTCTATAGAGCTCAATAGATAATAGCAAAAAGAAGACTTACTTGTCAT
TTTCTTTATCCCAACATGCGATTTTTGATCACACGGGGTCAAGGAAATAT
CCGTGGTCGTCTGGTAGAGGCAAAGACCCTCCAAGGAAGATAACGCTCTT
AAACTACATCACATTTTGTTGTCTGGTACAGGAAAGCTTGTTTTATGCAA
GGATAAAATGAATTCTATGTATGCAAATCGTCTAACGCATGTGATATGTA
CCTGAAAAACAAGCAATgataacaaaattgaaaataaattctagAAATAT
TTGTCGGTAGGGGTTGGTAtttatccttccaagaagttttaaAGAGggaa
ataacttttatagatcCTTTATCTTGAACAAATTAAACTTTGCGCTCGCC
AATTCAGAATGATGATATTGCAACACAACCCATCCGACACCAATCAATCC
AGAATTGATCGTtatccaaaaaaaatattttcagtaattaaagCAATCTT
CTTCAGTTAGTTAAAAGAAGAAGGACAAATTCAATTGTTGGATATCAGTT
TGTGTCAGCTCTAAATTGTGTCTTGACATAGTAAACAGGGGTTATTCATC
TGtgtaaaaagcaacaaaaatctACTTAACAGACGTTTCATCTATCTAAC
ATCATACTAACATCCAAATTTATTTCAGGTTAAAAGCTGGTCTGAAAACC
TTATCTACCGGTCAATTAAAAggtaaaaatttatcatttcaTAATGTTAC
AACCTagaaactaactttttttctttctctttcaaTTTTAGTAGGCGCGA
GGATGGATGAGGAGCGGCGTTTGGTGGACGGAGGATCAAAGAACAAAAGC
TATAATGATGATACCAGAATCAAAATTGACGGAGACGATAAAAAGCCGAA
CGAACTGGTCACTTTTAACGTCAGCGGTCGTAAATTCATAACAACCAGCC
ATACGTTATATAATTTCCCCGATTCCCTTATCGGAACAAGTGAAAACCGC
GCTAAATTGAAACGAACCAAAGATGGGGAGATCTTCTTAGATAGACATGC
TATCGTCTTCGAAAGCGTGCTCACGTTTTATCAGACGGGTATTTTCGAAC
CACCCTCTCAAgtcaatcaaaatattttcgttgGTGATATCAAATATTAT
GAACTAGTTGAAGAAGCAATGCAGTCTGGATTAAAAGGATTTGATAATAA
GGTTATACCGATGCCAGAAAGATTAGTACAGCGTAAAATATGGACATTAT
TGGAGTACCCTGATTCATCATTCATGGCAAGAATAGTATCCATGTTTTCT
CTGCTGGTTATTATAACTTCAATCGTAACATTCTGTTGGGAAACTGTACC
GGAGTATAATACCAATAAAGTCAATTATGATGACCTATCACCTGGTAAAC
AGTTGACTATAAAGATTCTTGACGATATTGAGTTATTCTGTATCGTCTAT
TTCACATTTGAGATTATACTGCGATTCGTATGTTCACCCAAGAAATGGTC
ATTTatgaaagatattttgaatATCATTGATATCGTGTCGATTCTACCGT
TTTATGTGACACTCATATTCAGCATGGAAGGTAGTGTTTCCATATACTTT
CTGCGTgccgttcgattggttcgagtATTTCGGGTCTTTAAATTATCACG
ACATtcgaatgaaatgaaaatattgggTATAGCTGTTAGAGAAAGTGGAC
GCGAGCTTGGAGTACTTGTATTCTTTATTTTGTTGGCAGTACTTTTATTC
TCAAGTGCTGTTTATTATGCGGAAGATGGTGTACCAGGCACGAAGTTAGT
CTCGATTCCAGGAGCTTTTTGGTGGTCTATTGTTACTATGACAACAGTGG
GATACGGAGACGAAGTTCCACAATCAATTCGTAAGTAGAATTCCTTTACT
TATCGCcaggaggggggggggcactcatatggttcGACCTacagtatgtg
ccgcccttaagggtaggtttttcgaaatgcactgtaagggtgtacttttg
atagagtgcactacaaAGGTCTTCTTTATGCTGGATACACTGTTagggtg
tgtttggggactACTGAATTGTAAGTCCGGTTAGtaagattttgatttat
atCTTTATAGTTGTAACtcgcacccattttgatttgttttgcacattgtg
ccgacatctcaggctcattttcaggtggcttcagcaaaataagatatgaa
atcaaactacactgtatgtaagggtcaaaaacattcagtaaaatgcactg
taagggtaccttttcattGCTCAAtggctgcactgtaagggctcgatttt
gaaaaccatttttttgACAGCACACGCCGTTGTTTAAAAATCGAGTGAAT
AAATAATCTAAAATGGAGTCCAGGATGTTGTTTGTTGTCAAAATTCTCAT
ATATGTTTAAAATATCACCGGAGTTTGACCTATTTTCCCTTgaattttgc
tttatttttctgTCGGGTAATGAAGTTGATGTTTTCAGAGCTTTTTACGC
AATTTTAAAAAGGAAAGCGGTTACACTAGAGACTCAGAGAGTAGATTATG
CTGGAGGATAAAAAGAATATATACTTCTGAACTAGATGAGCTAGTAAATT
GCATGAAAACATTTCATAGACAAATTAGACCTCATTTGATAGTGGTGCCA
AAAATTTCTGGTCCAAACACAATTAAAGCACACTTCTCACTTTAAGAAAA
ATTCCAGTCACTCTATGAAaccacaaatatcttttttggaatttttccaa
ACTATCTACAATATCTATTGCTTACCGCACTATCGCTCTTATTAAGAACA
AATGATAACAGTCTTTTGTATTCACTTTACCAATTTTCAGATCGTCGCCA
GCGAAAAAGAAAtgaacttaagggctctgaccatagtccaaaaattgatt
ttggtatttgaacataaaagttacatttcaggttccttaacacttttaac
aaagaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNgtgcgcagagtcatttacagatttttc
ttgtaacaatgagaagacaatggatctctcttgggagcaacgagagaagt
taatccacctattctaatccgttggtcaaaagttatgagtttttttaagc
aaaatccagatgaaaaattgatgaaaaaccactattttgaagatttcgag
acaaacaagcatttacaaaaattttccgcaaaaatttttattgttcggta
aaagatacaccatctattgggaaaagattttcaaaatgttttttcttcgc
cgaaactaagctcttcaaagttgaaatactcttcctcgcaaaagtcttca
ttttcttcttcatcaaattttttcaatgcaattcttgaattttcagattc
aggaatagtttgtctaacagaaaatgtatgacatgccatagttttattgg
ttacatcagtcagaaaacacattttaaacacggcaattatgaaaaattca
ctatggtcagagcccttaataggggtggaaaataaaattgatgctctcta
attcgacgttctactattgaGACGCACCatcattcgataatattgaaagg
cACCGTCAACAAGATACTCTCACTAACGACGCTCTGCTACCCTTATTCTG
TGAACATCcaatttctcttgaaaatctACTTAGAGAAAGTCGACTGTAAC
TTCAAACAAATAAAAGCGAAATATCGAACGATTACAAATTTTCTACTTAA
ATAAAGTCTTAAAATTGAGGAAATATAAACTTAAAATTCCTGAATTGTTT
AATATTTGTCTCAATTTAATCGAGAGTCCTGATGTTTTGTTAAATTAGAA
AGTTTCTAAGGTggaattctttttgtttttttacagcTGGTCGTTTGGTC
GGTGCAGTGTGCGCCATGACAGGTATCCTCGTGATTGCAATGCCGATTCC
TATCATTGTCAATAATTTCACACGACAATATCAACGATTGAAACCAGCAT
CAAAATACTGGGAAGATTTTCAAGACACGCGGAAATTATCCGGTGAGGGT
ACGGACGAAAACGGAAAAACAGACCGGAAAACTAGTCACGTGATTGGATT
ATATGAAGTAGACATTAATAAAAATGAAGCCAAAAATGCAACGGTGGTTA
GTAGTAACCATAGCAATCATGTAAATGGTAGCACAACCAAAAATAATGGT
GACGTCACTGAAATCGGTTTACCGAATGGGAAGGTTGAAATCGCCCATAC
AGCGCTTTGAGAAAAAGTTTTCGGGCTAAAGAGAGCAAAAGAGGGGCCAA
AATACTTTTTATGGACAATAAGGGTAAAAGACATAGTATTATGGGTACTA
TTTACCAAAATTTggggaaaagtgaaaaatattcaaacTCACGTTCGATA
TaaagaatatatttattttgataactttttttataaacatttgaATTGAT
ATATATTcgtaatctttaaaaaacttttttttcgtttagattttttttgg
agGAATTGACGATGTCAAAACTTTCGACCTCTGCCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048276-exon-scaffold_142-1491911889:179334..179420 | TCONS_00048276-exon-scaffold_142-1491911889:179334..179420 | Clytia hemisphaerica | exon |
| TCONS_00048276-exon-scaffold_142-1510915933:179334..179420 | TCONS_00048276-exon-scaffold_142-1510915933:179334..179420 | Clytia hemisphaerica | exon |
| TCONS_00048276-exon-scaffold_142-1575043694:179334..179420 | TCONS_00048276-exon-scaffold_142-1575043694:179334..179420 | Clytia hemisphaerica | exon |
| TCONS_00048276-exon-scaffold_142-1491911889:186425..187513 | TCONS_00048276-exon-scaffold_142-1491911889:186425..187513 | Clytia hemisphaerica | exon |
| TCONS_00048276-exon-scaffold_142-1510915933:186425..187513 | TCONS_00048276-exon-scaffold_142-1510915933:186425..187513 | Clytia hemisphaerica | exon |
| TCONS_00048276-exon-scaffold_142-1575043694:186425..187513 | TCONS_00048276-exon-scaffold_142-1575043694:186425..187513 | Clytia hemisphaerica | exon |
| TCONS_00048276-exon-scaffold_142-1491911889:190070..190720 | TCONS_00048276-exon-scaffold_142-1491911889:190070..190720 | Clytia hemisphaerica | exon |
| TCONS_00048276-exon-scaffold_142-1510915933:190070..190720 | TCONS_00048276-exon-scaffold_142-1510915933:190070..190720 | Clytia hemisphaerica | exon |
| TCONS_00048276-exon-scaffold_142-1575043694:190070..190720 | TCONS_00048276-exon-scaffold_142-1575043694:190070..190720 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_142 | supercontig | scaffold_142:179334..190720 + |
Blast
BLAST of TCONS_00048276 vs. Swiss-Prot (Human)
Match: KCNA1 (Potassium voltage-gated channel subfamily A member 1 OS=Homo sapiens GN=KCNA1 PE=1 SV=2) HSP 1 Score: 260.381 bits (664), Expect = 1.646e-78 Identity = 168/391 (42.97%), Postives = 249/391 (63.68%), Query Frame = 3
Query: 168 KIDGDDKKPNELVTFNVSGRKFITTSHTLYNFPDSLIGTSENRAKLKRTKDGEIFLDRHAIVFESVLTFYQTG-IFEPPSQVNQNIFVGDIKYYELVEEAMQSGLK--GF-DNKVIPMPERLVQRKIWTLLEYPDSSFMARIVSMFSLLVIITSIVTFCWETVPEYNTNKVNYDDLSPGKQLTI----KILDD----IELFCIVYFTFEIILRFVCSPKKWSFMKDILNIIDIVSILPFYVTL---IFSMEG------SVSIYXXXXXXXXXXXXXXXXSRHSNEMKILGIAVRESGREXXXXXXXXXXXXXXXSSAVYYAEDGVPGTKLVSIPGAFWWSIVTMTTVGYGDEVPQSIPGRLVGAVCAMTGILVIAMPIPIIVNNFTRQYQR 1277
+ D DD + E V N+SG +F T TL FP++L+G + R + E F DR+ F+++L +YQ+G P V ++F +IK+YEL EEAM+ + GF + P+PE+ QR++W L EYP+SS AR++++ S++VI+ SIV FC ET+PE +K + T+ I D +E CI++F+FE+++RF P K F K+I+N IDIV+I+P+++TL I EG + S+ LR +RLVRVFR+FKLSRHS ++ILG ++ S RELG+L+FF+ + V+LFSSAVY+AE + SIP AFWW++V+MTTVGYGD P +I G++VG++CA+ G+L IA+P+P+IV+NF Y R
Sbjct: 27 QADHDDHECCERVVINISGLRFETQLKTLAQFPNTLLGNPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDMFSEEIKFYELGEEAMEKFREDEGFIKEEERPLPEKEYQRQVWLLFEYPESSGPARVIAIVSVMVILISIVIFCLETLPELKDDKDFTGTVHRIDNTTVIYNSNIFTDPFFIVETLCIIWFSFELVVRFFACPSKTDFFKNIMNFIDIVAIIPYFITLGTEIAEQEGNQKGEQATSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEAEEAESHFSSIPDAFWWAVVSMTTVGYGDMYPVTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 417
The following BLAST results are available for this feature:
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