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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048273 ID=TCONS_00048273|Name=TCONS_00048273|organism=Clytia hemisphaerica|type=transcript|length=1864bp
ATTTGAAAAACATTGTTCAACAAGATGACATTGTTTATTCCAATGGATGG
CATTGCCACTGGCAACAAGAGATCTAGCGGCGCTTATTTTGGTTCAACCC
GCTCTTTGAGATCACTCTGTGATATAGGCGCGAGGATGGATGAGGAGCGG
CGTTTGGTGGACGGAGGATCAAAGAACAAAAGCTATAATGATGATACCAG
AATCAAAATTGACGGAGACGATAAAAAGCCGAACGAACTGGTCACTTTTA
ACGTCAGCGGTCGTAAATTCATAACAACCAGCCATACGTTATATAATTTC
CCCGATTCCCTTATCGGAACAAGTGAAAACCGCGCTAAATTGAAACGAAC
CAAAGATGGGGAGATCTTCTTAGATAGACATGCTATCGTCTTCGAAAGCG
TGCTCACGTTTTATCAGACGGGTATTTTCGAACCACCCTCTCAAgtcaat
caaaatattttcgttgGTGATATCAAATATTATGAACTAGTTGAAGAAGC
AATGCAGTCTGGATTAAAAGGATTTGATAATAAGGTTATACCGATGCCAG
AAAGATTAGTACAGCGTAAAATATGGACATTATTGGAGTACCCTGATTCA
TCATTCATGGCAAGAATAGTATCCATGTTTTCTCTGCTGGTTATTATAAC
TTCAATCGTAACATTCTGTTGGGAAACTGTACCGGAGTATAATACCAATA
AAGTCAATTATGATGACCTATCACCTGGTAAACAGTTGACTATAAAGATT
CTTGACGATATTGAGTTATTCTGTATCGTCTATTTCACATTTGAGATTAT
ACTGCGATTCGTATGTTCACCCAAGAAATGGTCATTTatgaaagatattt
tgaatATCATTGATATCGTGTCGATTCTACCGTTTTATGTGACACTCATA
TTCAGCATGGAAGGTAGTGTTTCCATATACTTTCTGCGTgccgttcgatt
ggttcgagtATTTCGGGTCTTTAAATTATCACGACATtcgaatgaaatga
aaatattgggTATAGCTGTTAGAGAAAGTGGACGCGAGCTTGGAGTACTT
GTATTCTTTATTTTGTTGGCAGTACTTTTATTCTCAAGTGCTGTTTATTA
TGCGGAAGATGGTGTACCAGGCACGAAGTTAGTCTCGATTCCAGGAGCTT
TTTGGTGGTCTATTGTTACTATGACAACAGTGGGATACGGAGACGAAGTT
CCACAATCAATTCcTGGTCGTTTGGTCGGTGCAGTGTGCGCCATGACAGG
TATCCTCGTGATTGCAATGCCGATTCCTATCATTGTCAATAATTTCACAC
GACAATATCAACGATTGAAACCAGCATCAAAATACTGGGAAGATTTTCAA
GACACGCGGAAATTATCCGGTGAGGGTACGGACGAAAACGGAAAAACAGA
CCGGAAAACTAGTCACGTGATTGGATTATATGAAGTAGACATTAATAAAA
ATGAAGCCAAAAATGCAACGGTGGTTAGTAGTAACCATAGCAATCATGTA
AATGGTAGCACAACCAAAAATAATGGTGACGTCACTGAAATCGGTTTACC
GAATGGGAAGGTTGAAATCGCCCATACAGCGCTTTGAGAAAAAGTTTTCG
GGCTAAAGAGAGCAAAAGAGGGGCCAAAATACTTTTTATGGACAATAAGG
GTAAAAGACATAGTATTATGGGTACTATTTACCAAAATTTggggaaaagt
gaaaaatattcaaacTCACGTTCGATATaaagaatatatttattttgata
actttttttataaacatttgaATTGATATATATTcgtaatctttaaaaaa
cttttttttcgtttagattttttttggagGAATTGACGATGTCAAAACTT
TCGACCTCTGCCTG Run BLAST on NCBI transcript from alignment at scaffold_142:170729..190720+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048273 ID=TCONS_00048273|Name=TCONS_00048273|organism=Clytia hemisphaerica|type=transcript|length=19992bp|location=Sequence derived from alignment at scaffold_142:170729..190720+ (Clytia hemisphaerica)
ATTTGAAAAACATTGTTCAACAAGATGACATTGTTTATTCCAATGGATGG
CATTGCCACTGGCAACAAGAGATCTAGCGGCGCTTATTTTGGTTCAACCC
GCTCTTTGAGATCACTCTGTGATAGTAAGTCTACATATTTCATTTATATG
TCAATACCATACTCATACTCGTACGCAAGGACCTACTTCTTCGCGGAAAA
GAATTGCGAAGTACAGCTTGTTACGGTTTTGATACCTCTGTAGTGGAGTG
ATGTACTTTAGCGTGCGAGCTTCCTCACTTAAAACAACATCACTTTTTTA
atctcaattttatttttaatagaaTCTTTCGTTTTTCAAAAGAGCAACTG
TTTATCGATTATGTAGTTTCAGAAAGTTGGTACTAGCGTGAATTCCTCTA
ACCGTAACGGTAATATTTATATAAAAGCAAAAATCACTTGTTGGAATTCG
GGATGGTACAGGCTATGATTTTTTATGCCTCTGTTACATTTATAACAATT
TTCTGGGCCCTTTTTTTGCGAGAAAGCTTAATCCTCAGATTCAAGCATCT
AGTTCCTAAATCTGAAACCATGTTTAGACGTTACGGTTCATCCGTTTCGT
TCCGGTGTGATTTTtgttacggatcgagagtgttcatattagTTTCGGAA
CATTTTGGAGCAAGAAAGCGGAGCAGTTCCGCTCCGataaaaaaagtgga
gcgaaaccatTTCGATCTCTTTTGCTGTGTAGTTAATTGGCCCAACAAAA
GATGTATCATGTTTTTTGACCACTTATTTGCCTCAGTAAAGTTTCCATTG
TCATGCTTAAAATAGGGTGATATGTTGTTTTTATAAATTCGGTTAAGGTA
AATTAAAGGTTAAACGATTTCTCTCTTTTACCCAGGCTACTTCAAATTTA
GAATCAATTCAAGtgggatttcatttttttgaaatgtgttcaaTTTTGTC
CGCCATTTTAGTTCTTGAATTAAGTTCAACACttattagactggagtcgt
ttataatgcgtgtaatacagtagtaaaAGGCTTTATaaacgattattgtt
acgggatttagtttgtataaactaaaagcTTGTATAGACTAAAATTGCTc
catccattactttttgctttatttctacaatgtctgaattagtcgtctag
cttgctagactaaacaCTTATGGATGTAAACGCATCGTAGGCTAAAAGTT
CAGGAAGTTGCTGCTATATTAgcgaattaaaaaatgtcaaaagtcgaaaa
gtgaacaaaatttttataaaatacaatAGATATTAAGGAACTTGACCTTG
AACTGAGTTGTCATAGgtcaaacaaaaataataaaacttttaagTGCTTC
AATAACATCAAAACACACGAAAATTATGAAAGCTACTGAACTTTAAGTTT
GTGGTCGAAATTCGTGTGCATGAAATGTGAAGTGTCTCATCCTGGAACTT
AATTTGAAAAGATGCTCGTTTTGATGCGGTCAAtcgaaaatatagaaaaa
atttcttttttgaatctTAACCTCAGTGAAATCTTTATTGGATACTGAGA
CGTATTTATTGGAAGATAGTGCTGGCTGGAATGTCATATAAGAGTTGATG
CTATTTCATATAGTTTCAATTCCAGTACCACAGACATTTTcgtatttgaa
agaaaaaagtgtCCACTGTTTTGGTATTTGAGCGaatattaaaaactttt
taccgAATTTATTggaaacattttaagaatatttttcataaaCCGTCACG
TTTTTACTCGAAAGAATGAATCCCATTACGTCATCAACAGCATTAATGGC
TTCGTACGATTATTCACGTGACCCTTATGGTATGTTATTTCTTTTACTTA
CAGTTTGTCCGGggaaaaaatacagaaaatatCGTTAAGCTTACCGTTGC
TTGTAAATTTattaaatcttttgtttttaaataagagtgatatcgtttgc
ttactcatcatcAAAGTAAATGAATTACCAGACGTGCGGCATTTAAGGGT
CAGTTGTTTTCAAGTTTCAGTTAGTGCTGCGCTGTAAGGGTACGTGTTTA
CATATACCTTGTTcctatgaaaattttcaaatgaaatgaatttttccTTC
GTAAGGAAGGAAATTAAGCTAAATTATACAATAGGGTGCTGCTCGCGCTC
TTGTACATGTGTATATTTCCCAACCTTTTTGAAAGGGAGGtgttccaaaa
agaaaaagataacgATGCAAGGGTGTACTTTTTGTCggtttctgcactgt
aagggtgtcaAATTTCGTAGCTtatctctgcactgtaagggtccgatttt
gaaagtcgatttttgggccgaacgtatggtcgttttcagaacGAGCACCC
CCCCCACCAGGCTCCCGGGATAGTTTTGCAGAAATTGTAAAGGATTTTTT
CCAGATGCATGACATATTAGGAAACCGGGTAACTTTCAGAAGTTCATTTT
TCGAACACCCTGAAATTCGGTCTATTTCCGCTAGAGAATTGCAGTGAAAT
CTTTGTCTGGGGTAGTGAAATCTTATCCCGAACGACGGTACTGAGCTCag
aaatttcaaaacgaggcgaACCTCTTTGtttaatcaaaagatattaaatt
ctCGAAGCATTTAAAAAGGACACTCCAGACACTCCATccatataagaata
taaggcttcggttaccgtgaaaagcacagggtAGGGTAGGCTTAGGCGGT
TAAAATGtgaagaacaatttaagaacatttcaagactttgtggaatctaa
aacacctgttttcttagaaaaatggaaagAATACTCAAAAGATtccgaaa
ataagaacacattaagaacatttttagccttgaaagccgaaaagttaaga
acatctgaaggcttcaaaaattttggatgttcttataaaaaacaaaacgt
gTAGATGTCATTCTTACGATCACTGATTTACagtatattaaattaaaaat
tttatcatGCAACCTCACGCGAAAGATAATGTCTCCTCAACTACTCACAT
ATAATGGATAAGAAGGAAACCTCTACAAAACTAAAACGAGATTCTTATCA
TCAAATGAATTTTCATGACATAATGGGACGAGATgtagtttttacaagct
tttatttgatttggttgatcgttaaccagtaatgaaacaattttgttact
ttttctaaagaacgcgtcatttcaaatgaccaattaataAAGTATCTTAA
AAAAACTCCATTTAATCTGGACATAATTCCATCCCTTGTCGGTCCCTGCG
AATATCATTCGTCTGATCAGAGTCGTTTACCACTGTCAACAAAACTAGTC
Tacaacaagtttttttataagaataaccaaaaatttttgatgtttttaac
ttttcaatCTTTAGGACTAAacatgtttttaacatgttcttattttcact
attttttgagtaattttgttcatttcctaagaaatcaggtgttttagatt
TCACAAAggcttaagatgttcttaatatttttggccatcaaagccttttg
ttcttatatagtttgttcttatacaaaacgtgtaTTTGATATTTATCGAA
AAATTGACACACCTGATTTAAGGTATgagaaaaagtaaattaaaggcTTA
ACCTTTTTACATTAGTCTGATGCAGAGTATTTATATTAAATTTTTGATGC
ATTTAGCAGCATTTGGAAGTATTGCAACATTTTTGGAGGGAGCACAAAAG
GAAGATACTACAGGTAATTTTCATcctgaaaccttttgaaaaaatttccg
atAAGGGGACCAAATTTCCTTAATTTCTTTGCTTTTCctccatttttaca
aaaaatttccgATTTCTAAgaactttgtttacatttacATAGCATTGCAT
TGCcctgatgaaaatcgaggtaaAAGTTCTCATCCTAGTGAGGTTTTGAG
ACCTCAAAATCAGACCTGATGAAATTGAGACAGGGGCGCGCTACTAGGTC
ATAAAAACTGGACTCAGGCTTGTCTAAGCCTGAGTTCAAAGTTACTATGG
GATGGGTTTGATATAACAAAATTCAGAACTTTGAATCTTATACAGCTAAA
TTCGCATAAATTGAAAACTGAAATTTCAAATGGAtgaattctaaaaaatt
tatcATGTTGCAGGCGTCAAGGAGGGGGTCCAATGAAAAATTGGACaaat
aaatttattcaaaatacggcgagacaaaatcataaaaatcaatatttcga
gaagtaataaagtaataaaggaagagtttttcaaaaagtgagtaaaaata
tatattatctGATAAGGAAATATTAAAAGATGTGTTTGATCTAggaatta
aaatctaaattgaCTTTACTTTCGGCAAATTTTAAAATCGTTATTATGTG
TTAAAAAAAGGATTATTTTCCGATTCTCTATTTGGCGAAAAATTCTTCGA
AATTCCAGGTAAGTGgctttttatgaattttaatttATAGAAAAGGGGAA
TTCTGTATAAAGAGcctaaaaaaagttcaaatttaaattcaaatttgaaa
gaCGAAACAAATTAGTACTTTTTGTGGATATCTTCTGCATTTTTGGACAG
GATAAAGTTGTTAGATAAAAGAAAGATCTGAAAAGTGCTCAAAATGACCG
AGAGTGTAATTTGTTGTATGACTATAAACAGTTTCTGTCATTAAGATATA
ATACACCTATCGCAACCCTTGGCGCGTGTGAGGACACTGGTAacgaaaat
acaaggaaaattcTCCCCGAGAACGGCATTGAAAAAACAAGTGTAGAAGA
GCTCTTGTGAAAAATGTAAGTTACATTTAAGCGAACGTAAATATCAAAGT
TATTCTCGAATGCTAAAAGTACTTTGCACTCTACCGCAGAGACTCGGGAA
AATGCCTCTAGGCGGgaatttgcttgttttttttattaagtTCTAGACTA
AAAATGCCGTGCACCGAGAAAAAGTGTctccttgtaaattcattaccaaT
CCCCAAAGAAATCGGCTAAGGGTTGATAGGTGTTCAAATAACCGATAAGG
ATTGGTCGcaaagaatacacgttttttttaagaacattcaagatttttga
agtcttcggatgttcttaacttatttaGTATAAAGCTtacgaatgttctt
aacatgttctctattttcaccattttcttaagaaaacgggtgtttcagag
tcggcaaagccttaaaatgttcttaactttttcttaacatttcggccatc
gaagcctgatgttcttttatagtttgttcttatatagtttgttcttataa
aaaaaacgtgtaatctaaCTAATGAAGAGTGCTAAAATAGGGCCTGAGTA
TAAAGCTATTTGATCCTTTTCACTTTGTCCCCTAAAATCTGTCGTTATAA
ATTGGGCGGGGTAGTTTGAAAAATTCCATGTTAATGAAATGGACagcttt
tgaaggaaaaatataaaaaaaatcatggaaataTTTTTGACCTTATTCAC
TGAAAAATGTAGTTTTTTAAGGGACCATTTTACTTGTAAAGGcaaattat
ttatattttatagtttagaggaaagaaagaaaattaggGTCTTTTTGGGC
TTTTGCCTAATTTATTCCTccttttaaaaagtgataggTTAAACGAAAGA
ACTATATAACTGTTTAAATATTTATCCTggtgaaaaaaatctttttggtt
TAGAATTTTCATGatggtttttttttatttgttttttttgggggggcaAT
CAATAAAAGCATTTAATTATTGTTAATCTCATTAAGGCCTAATCGCTATC
TGTTATTTGCTCTTTTTCATGAGAATAAACCGATTCAGCATAAATTTATA
TGAATTGATATAGTTAAATCATTCAAAATCACCTGAGGGGAGTCTTCTAA
GTTATTCATCCCCTTAAAGTAAGCAAGCCTATatgaactaactttttttg
tttcatctcAAATCAATGTGCAATGTAGTATTGGNTAAAAGCATTTAGTT
ATAGTTAATCTCATTAAGGCCTAATCCCTATCTGTTATTTGCACTTTTTG
ATGATAATAAACTGATTCAGCATAAATTTGTATGAATTGATATAGTTAAA
TCATTCAAATTCACCTGAGGGGGTCTTCTAAGTTATTCATCCCCTTAAAG
TAAGCAAGCCTATATGAACTAACTTCTTTTGTTTCATCTCAAATCAATGA
GCAGTGTCTATTATAGTAAACCTGATAGAGAAAATATAGCGTGAAAGTAG
ATGAAAATGTTAGATAATTTTATTAGTATGGTCTTGCGGTCAATCGGTAA
AGTCAGTAAATCTTTTAATGTGGCATAAAATCTAGAAATTTTTAGTCACA
CATGAGTAAGAATATAAGCGCAAACATTGTAGTTAGCTAGATAACGTCCA
GAGAAATTGAGAAATTCAGCCATGAGTGTTATGAGAGTTTGAGAAAGCAG
TGAACGAAGAGGATCCAGTTTCAAAGGGAATTATTCAGGTATcaggtaaa
aaataaataaaaaacttccACTCTGCAGGCTCTTTTTAATAACAAGAAAG
TTTACAGCTATCCGTTTCAGTGACCAAGTGGTAATAAGGATAGAAAGGgt
gaaaatttggtaaaatgtgAAGATGGTCAAGTGGACTAAAGTCTGtcaca
aaataatttgcagttgagacaaaaatggctttagcttttgatagaatttg
aatcaagttgcgattttgtccttgttgaaaagatatttgtgagtgtaATA
TTATCAagccaaaaaaaaatgaaaaaagaaaagaaaatgaaaatgaaaaa
tgaagaagaaaaaaatctactcattgtagaaatgtggtataattaccatt
tttacAGGAGTGGTTCTTCAATCTTATATCATCATccctgtgaaaaaaat
tttcaaaaatattcattcaatcaaaagatatctaacaaagtttattgctg
gttgactctaagtagtaaaaaacgacaaaaatcagccttttgtcgatcaa
ccaattcaaattctatcaaaagttacagccattttcgTCTCagctgtaaa
ttattttgagacagactttagtgtaTAATATTTCACTGGGGACGACATTT
TGGCTTATTTTCCAGTGGGATGGACTTCTCACAAGGCCTTATCGTGACTC
TTTTCACAAAACTTCCttagcattcaaataggtaaaataaTTTGCCACCT
TAATGTTGAATCTTGAGTTCAATTAATGAAGAAAATTGACCCTACCGGGC
AGACTTTTAAGCTCAACGTGTTAAATGTATAAACATATTTCCCAAGAGGT
ATTGAAATTCACACGtgattgaaaattgatccagaagataaaatattttg
tccgACCAATAATAAAGGTGTGATAAGAAAAACTTTTGATCGATAAAAAC
CCTCATCGGTGATCaatatttccttgttttttcGAAATCGATGATGAGCT
ACTgtttgtaaaatttgaaaaagagatcacttttttgaaaacatgaacaa
actttaaaaaaataatttgagtaAGATGTAAATTTTTTTAGGGACTTTCA
ATCGCAAGAGAATATAGGCTAGTAACCACTCAAGAACGAATATCATAATC
AGTGATGGATCTGAGGGGGGGGCTCAAAATTCATGACATGGATTCTCCAT
TTCCTTATAAGGAGTATGGGAAAGAGGAAGACTTCTcctttataaatttt
gaaacccCTTAGTTAATCGTAGAAATTCTAGCGAGAATAATTTCAGCGtc
ttagcgagttttccctattttcgctaaaataaatcttgctaaaacacgcc
gaatcgacagatcgctaaaatttatccacgcgaaatttctggttatatcg
ccttgatacatttttatcaataggaagagtttcagtgcaaagaaatgcta
gaaaacgaattcagtcaataatgtaatacaagtattcgctaaaatttatc
cacgcgaaattttttgaaatcgtgattcgctaaaataaatccaaaaaaaa
ttacgattttcctgactcgctaatatacgctaaactTAGtgtcgctaaaa
tttctacgattaaagtaataaaaaagtgTTTCATAACCTGCAAGGCATTT
ATAATTTAAGTTTGTGTTTAACAGATAGATGATAGCTTTTAGCACTCGAA
GAAGATTTGAAGATCTAAAAATTACTAAGTTAAAAAAAGGTTATCATTAG
AAGCAAAATTAAATTTGTTAATCTTTCAACCataaaaatggtatggtttt
cTTTAAGTTAGTTTAGATTGAGAggataataaaataataaatcgCGCAGT
GGTTATACGTGCTGTTTAATTTGTAAATGTTTTCAGTAATGAGTATTATG
AACAGTGAAAGTTCAAGGGAGACATGGCGAGATGATTGGTGGCCTGCCCT
TCATAATATAATCAAAACTCTACAATCCCATATTTTAGAGATaattcaaa
tcttcatttttacagatagtaatttttttggaaggttatataatgtataa
aacttgaaaaaaattaaagtttgtCGGAAAGAGTGCATCTTAAGTTTAAA
AGTAAAATCTCTCCTAATTCTTAATCAACACACTCAAATAGTCAAATATA
CTAAATAACTCAAATATCATTATTAGAATTTGAGAATCGCCACAAAATTA
AtgaaagatgatgatgaatacATCAGGATTCACAAGTATTCAACACGCAA
ACAGGCTAGTCTTTTCAAGTGTACTGGCTAGACCTATGCCTAGTAAGTAT
ATTATTTTGTTTATACAACTGCCTCTGTTTCGaacctctgtaattcgaat
ctttctgcaaTTCGAACGAAAACATTGGTCACCTCAGCTGGAAAGTAGCG
ATAAATTCTTTCTTGACCCCTCcaagctgacacacaacgttgtttcaacg
tttatttaacgtccacaacgtccaaataacgttagatgaacgttgaaaca
acgttgtgtgccagctgggcttgaagatcgaattattGAGAGTCAACTAC
CTTTGTACCTGGAATAATTTTTCCCGTCTCTTCATAGAGTCTTAAGCTGT
GTTGCCTCTCTAATACATAGTATATGAATTTATTTGGAAATGACCATTTT
GTCCTTAAATGAACGATAAAGTGGACTTTCTGATGAGTTCTTACTTTGGA
GTTGGCTGCACTTGCTAGAACTAGTTTTGAACTGCCATCAGGTCATATAC
TGTATGCAAACTTCAATGTGactaaaaaaagagaaaaaaaaacatttaaa
ggcttGTATAATGGTtacaaaatctttcttttttaaaagctaAGTTTCGC
TGTGAGGAGTGACTCCAGGGGTCGATCCAGCTTTAGGTTTACCAGCTCTG
TGTCTGCGTCTGTCTGTCTCTGTGTTTTTTAGGTCTCGTTTAAGTAAGTC
TGTTCTATGAAACGTCAGGGAGAAAATCTCTGGGAATAATTGTCCTCGAA
TTTGTTGCGTGAGCATGTATGGTCAAACctataatttcattttctcttgT
TGTTATAATATGACAATTAGTGGGCAATGGAATACAAGAAGCCATCCAAA
TGCCTCTTGTCTTTTGGAAGTGGTTGCTATAGCAAATAAACTCTCCCATA
TATTGACATTCAAAATAAAGTCTTCAAAAATGATCTCAATTCTATGTATA
TGCGGATGGTTGGTTAAACATAAGGATATATGACCCAAAACACATATAGA
ACATTTAAAGCAAACTTTGCGAGTCGTATCGGAGAAAAAACGAGCTCTCA
TCGGACGTTTTTGAACGTACTCAGAAAGATTTTTATTGCAAATTATGAGA
GTCTGTGTGAAGCAGATGCCATATTGATGGTCCAATGTAGAGAGAAATct
taatgtttttttatgaattttacggtcaatttttttttgtgtagTTGATG
TAAAGAAATGGAAAGGAAATTTTATTATGAAGTTTAAATCGCGTATAAAA
AGCATTATAAGGGTTTGATTGAAGAAGGATTTCTTTTGCCTGAtttataa
ctttttttgggagaagaagaaaacgaatttAAGAAGAAAAGTTCAAGAAG
GTGGATTTTGTGTAAGATGTTCAAGAGAAAGTGGAGAAGAGGTACTACta
actaaaaaaaataattctgggGTCATTGAATTTGTTATTTGTTTTCTAAG
ATACATATCAATAATGCTTTTATAGATGGTAAGGTcaacaggcccggcgg
aagcggggagactggggagacttcagcctctccacttttgagcaaatgag
atttttttctcaaattcttaGCGAGTTTTATCTCATTTTTTGAGCagtca
gcctccccacttttacggttgctCCACCGGGCTTGAAAGACGTGGTGATT
TGCCTGTTAGTTAATATATTGGTTGTATGGTTGGATTTTTTAtctttatg
ttttctttatGTCTTGCAAAAATCAACAACATATTTTCATCTAAATAAGC
TTTAGTTTAACGAGCCAGTGATATTCGTTGAcaagtcattgcattgatgt
TGGACAGTAGTGGTTCATGTAACGTTTATGAGAACATTTACATAGATATG
TGGAATTCGTGTGCAACTAACAACGCCTTAAACAATCTCAGACGTCAATG
taattattttaaattattatCTCGATGAACTTTCCATAATACACTTTATC
TGATgatttcaattcatgatattgtGATAATTGTGTTTGCcacaaatttt
gaattcaaacaatAAACCTGACCTACCTGACTCATCGAGGTAAAAAAAGG
TatcctgaccagcggcacatccctGTACCCCTTTTTACCCAAGCACACCC
TCCCCGGATGTGATAGAAGTCTGGAAACACCTATTTACCCTTCCCACAAA
TCTTCCAAAGGAAAGTTCTAAACTTGATCCAATTTTCCcacaaacttttt
tccaaaaaggaaagaaagcgTCGAACAAACGGTGTAcatttaacatcttt
ttaacatCCAtgacgttagattaacgttgaaataacgCTTTGGTTTCTGA
TAAAGAGTTTACGGGTAGTTGACAGCTAATCAGGATATATAAGAAAGTAT
CAATTTCGTCTGATTAGGTTACATGATAGTATCAATAGTATCAATTTCCA
AATCTTTGGTGGGAGGGTCAAGGTATTaagtgaaaactttttaaaaagta
taaatGTCAATAGCTTTTGTGTCAAATTTCTGATAGAAAGATTTTCAATA
TTGAGGAATGTtctcaacctcgttccctgcgtattattagcttttttatg
cttactgatagcgctagataatagggttctctggcgtcaatcagtagcgt
aaataaagcctgggatacacggggacgaggttggaaTGTTCTTAGAGTCT
GTCGTGtaaaataaaaaggaattttgaaGAATTATTCAAAAGTTTGATTC
GAGTTGTTAGTTTGTGGTTTACAATGCGCTTAAAATACGGTAAATAACCA
TTTAAAATCTATGATTGTGATTATCACGGAATATGTATTAGAATTCCTGC
ATGAAACTCTCCGCAAAAGCGAATTTTGGCTTTCAGCTCTTTACTTTggc
tttacttttttaattgtGTCAATATCTTATTCTTTTTAAATGCTTTAAGC
GTAGTAGTGAAGCGGTTATAAACCTTGATTCCCCTATGTgaggtcagggt
tcgattcTCACTCGGTGCtatgattcacttggcaagttaATGTACCTTCG
CTCGGGTCGACCCATGCCTTGCGAGGGGAACTGGGTACCGTCACTCTGAT
AAAAGAGTATGGGGAGTATGTCAGGCATTTCATGAGGTGTGGTGACGATA
CTCATAGGTTCAACACATGCGAAGATGTATGTCCTCCCGTGTAGTTCGGG
TATCGTCGTCTATACACCAATAACTCTGCCTTGTCGCGAGCGTAGAGTTA
GCAGTGTGTGGTAAGCGTGATAATTTCCTAGGGTAGGTATCTATCCAGGG
ATAAGGCCCATTTCGGATAATTTTGAGGATTCGattctctctttttctct
tctttgaaTGCTTTGGAGAGTTAGACCTCAAACAGCTCCATAATAACTTT
TTTAGGGAACTTTTGATGAGCATTAAGCAGAGATATATATATTAACCCTT
GACTTTGCGCACTGTAGCCGAATGCTCTACCTTTAAACTACGGATTGCTG
CACTGACAAGAACGTACTCTTTAAGCAAAAATAGGCCCTGGTGGGTTTCA
ATTTCCAACATAATTTTGACCCTGACAGAACAAATTTGACAAATCAAgtc
aaaaaagtaaatattttcttccaaTTTATGACAAAAGTTGCTGCAAAGGG
ACGATGACAAGCGAAGTGTTCATGTATTCATATTTTACACTTTAGaatgg
cacgccagtcgggctggaacggtatcaggCGGGAAAAGTGaacgtaggag
ttaggtaagcgtaaaaagaaattttgttggcggcaagggctgaaagtaGT
CTCTCACCAACTTTTTCTCGTTCTCCTACGTAGCTCCTATtgtagcaaac
gcccgccgcccgTCGCCTTTATGTTTCCAccccctctgacatgattaatt
aacagactagtttgctagtctaattTTACCTTGATGATCTTTTTACAAAT
ATGTaaaataatattgaaatttCGCCATAGTAATAGACGGCCAGGAGGTC
ATTAGCATTTTCAACAATAACATTTAAATTACCTTCCATTAACGTTCATG
ATGATGCAAAGTAACTTTGATATAACTATCAATTAAAGGGGAATTCTGTG
GTTCAAAAACGAAATCGATTTTAAACCCGCAAGAATCGTGTCTAACTTTT
CGACCGGAATTGGTCacttttctaccatttttgcAACGGACGTGACTCac
aaatagatcttatcggagtttttgatttttcttaaaaagcgATGCATATT
GTGGGATtatttcgggagtattacaaaaGAATTccagagatttctattgt
aatactcccgaaacaatcacACAATACatcgtttttttagaaaaatcaaa
aactccgataagatctattgtgAGCTATTTTGCATTAGAAGTATGAACCG
CAAAAactgtttttgaaaattaataaatacctctacaaaaaaagtcaaat
aataATAGATAGCTTGCGACGGCAACATGGTTTCTGCAGCCTACGGCGAT
TTTTGCAAGACATTTGCGTAGTTTTCAATAGTAAAAAGAAGATCGCAAAA
TAATATTTAATTAGCTTGAAAGCAACGTTTCAATGAATAAGGTTCAATCA
TAATAACACCCAGAAAATACCtccaagaaaaattatttcacatTGATGAG
TTCAGTTTTTACAGCTAATTCTCAAAGTTAAATATCCCGACGGGGGAGAA
ACTGGGGGCGGAATATGTGTGCAAAGCATGTAGCTACTTCAATGTGACTT
TTTTCTGTGGGATTGATGATGAATTTTGAGAAGTAGAACAGTCGAAAATA
TAATTAAACAGTCAAATACACTGGTCTAGTGGAAGGCACTTTTCGTTTTG
TTCTCGTTTAGCATGTATAAATGTGCCGTAACGCGAGGGGTAGCTGCCAA
AAATTCGTCTGTCGTCAAAAAATATCTACCAATACCTTGCTATTAGTTTT
TGACGAAGAACACACCAAGGCTTTGTTAGTCCAACGACGGCTCACGgtcc
ttaaccctttaagtaccacggccacttttttctaagttttttaaagaaaa
tcgctgcACGGActtgcctgaatgatagaaaggtgcccagtggtaaaact
ccAAATTAATTCGgtagaggacagaatcaagtaaaccAGTAGGGCCAatt
ttggaggttcttgaatcactcattgaccaaaaatggtcaaaaaacggtca
aaatcttaaaaaagtcgatttttgtcaaatctttgcattttttcgacttt
ttggcttaaaatctcgctggaaagattcactttaaattttttttcttgac
caTGAAACCCAACCCAATTCCTACgaattagaccaaaaatgatgatttct
aactcaaactggccATTACAGGAGGATAGCCCATGTCTAGTATACTCATC
ATTGGTACTTAATGGGTTAATTGGTTAGTTTATCcggaaataaaaattta
ggGGATTTCCGCTGGAAATATTGGACCAAACAGTCATCATTATGaatgaa
ttaaattttaaattgcCTCGCAACCAGTGTTCATATGACtttgatacaat
tttttttaagaaactagttttccCAAGCAGactcaatgtttcttaaaaaa
tcggccttttgagccttaaatgtttctcacatgtttctaaactttttgac
ataatcagcctcgtGGAAgtctggattggaaggttcttaaaaaaaaactg
aattaaaaaatttaggcattctgagcctcatgtttcttaaaagtgtttct
tgaaaaaaaaaaacgtgtagttttttttcttaattaatttcttaataata
aaattttgcCACAAAACTTTAATCAGTTGTCATCATCTCTATTTGAAGGT
TTGGTAGGGAGAAAGAATTtttcatttgaatattttgaaagattttttgt
gACACGCGTGGTTTTAACAAACGTAGCGTATAGGGGAGGTTttggatttg
tttttttttatttgattttcaagaTGCATGCGGGCCAAGCAGCAGGTCAA
ATTAATGTGGGAGAAGTACATATACATCCTGCCGGTAAGACAATAATTTG
GATATTAGAGATTAAACGTTGTTCAACTATAAATTACTTTGGTTCGATAT
AACGAAATGATAAATACAACATCCAAGTTTAAACTTCCTTTGCAATGGCC
ACTATTTTTCTCTCTTACGCGGGAAATGGTGTTATTTCGAGTTTTCTTAG
CTGGTGAGCAAGCGGAACCTACTACATGTTAAGAGAATCATATTTTTAAG
CTAAACTTAACAGATGCTTGGATCTTAGACAAAATATGATTACGTCAGTT
GTATCATTTCTATAGAGCTCAATAGATAATAGCAAAAAGAAGACTTACTT
GTCATTTTCTTTATCCCAACATGCGATTTTTGATCACACGGGGTCAAGGA
AATATCCGTGGTCGTCTGGTAGAGGCAAAGACCCTCCAAGGAAGATAACG
CTCTTAAACTACATCACATTTTGTTGTCTGGTACAGGAAAGCTTGTTTTA
TGCAAGGATAAAATGAATTCTATGTATGCAAATCGTCTAACGCATGTGAT
ATGTACCTGAAAAACAAGCAATgataacaaaattgaaaataaattctagA
AATATTTGTCGGTAGGGGTTGGTAtttatccttccaagaagttttaaAGA
GggaaataacttttatagatcCTTTATCTTGAACAAATTAAACTTTGCGC
TCGCCAATTCAGAATGATGATATTGCAACACAACCCATCCGACACCAATC
AATCCAGAATTGATCGTtatccaaaaaaaatattttcagtaattaaagCA
ATCTTCTTCAGTTAGTTAAAAGAAGAAGGACAAATTCAATTGTTGGATAT
CAGTTTGTGTCAGCTCTAAATTGTGTCTTGACATAGTAAACAGGGGTTAT
TCATCTGtgtaaaaagcaacaaaaatctACTTAACAGACGTTTCATCTAT
CTAACATCATACTAACATCCAAATTTATTTCAGGTTAAAAGCTGGTCTGA
AAACCTTATCTACCGGTCAATTAAAAggtaaaaatttatcatttcaTAAT
GTTACAACCTagaaactaactttttttctttctctttcaaTTTTAGTAGG
CGCGAGGATGGATGAGGAGCGGCGTTTGGTGGACGGAGGATCAAAGAACA
AAAGCTATAATGATGATACCAGAATCAAAATTGACGGAGACGATAAAAAG
CCGAACGAACTGGTCACTTTTAACGTCAGCGGTCGTAAATTCATAACAAC
CAGCCATACGTTATATAATTTCCCCGATTCCCTTATCGGAACAAGTGAAA
ACCGCGCTAAATTGAAACGAACCAAAGATGGGGAGATCTTCTTAGATAGA
CATGCTATCGTCTTCGAAAGCGTGCTCACGTTTTATCAGACGGGTATTTT
CGAACCACCCTCTCAAgtcaatcaaaatattttcgttgGTGATATCAAAT
ATTATGAACTAGTTGAAGAAGCAATGCAGTCTGGATTAAAAGGATTTGAT
AATAAGGTTATACCGATGCCAGAAAGATTAGTACAGCGTAAAATATGGAC
ATTATTGGAGTACCCTGATTCATCATTCATGGCAAGAATAGTATCCATGT
TTTCTCTGCTGGTTATTATAACTTCAATCGTAACATTCTGTTGGGAAACT
GTACCGGAGTATAATACCAATAAAGTCAATTATGATGACCTATCACCTGG
TAAACAGTTGACTATAAAGATTCTTGACGATATTGAGTTATTCTGTATCG
TCTATTTCACATTTGAGATTATACTGCGATTCGTATGTTCACCCAAGAAA
TGGTCATTTatgaaagatattttgaatATCATTGATATCGTGTCGATTCT
ACCGTTTTATGTGACACTCATATTCAGCATGGAAGGTAGTGTTTCCATAT
ACTTTCTGCGTgccgttcgattggttcgagtATTTCGGGTCTTTAAATTA
TCACGACATtcgaatgaaatgaaaatattgggTATAGCTGTTAGAGAAAG
TGGACGCGAGCTTGGAGTACTTGTATTCTTTATTTTGTTGGCAGTACTTT
TATTCTCAAGTGCTGTTTATTATGCGGAAGATGGTGTACCAGGCACGAAG
TTAGTCTCGATTCCAGGAGCTTTTTGGTGGTCTATTGTTACTATGACAAC
AGTGGGATACGGAGACGAAGTTCCACAATCAATTCGTAAGTAGAATTCCT
TTACTTATCGCcaggaggggggggggcactcatatggttcGACCTacagt
atgtgccgcccttaagggtaggtttttcgaaatgcactgtaagggtgtac
ttttgatagagtgcactacaaAGGTCTTCTTTATGCTGGATACACTGTTa
gggtgtgtttggggactACTGAATTGTAAGTCCGGTTAGtaagattttga
tttatatCTTTATAGTTGTAACtcgcacccattttgatttgttttgcaca
ttgtgccgacatctcaggctcattttcaggtggcttcagcaaaataagat
atgaaatcaaactacactgtatgtaagggtcaaaaacattcagtaaaatg
cactgtaagggtaccttttcattGCTCAAtggctgcactgtaagggctcg
attttgaaaaccatttttttgACAGCACACGCCGTTGTTTAAAAATCGAG
TGAATAAATAATCTAAAATGGAGTCCAGGATGTTGTTTGTTGTCAAAATT
CTCATATATGTTTAAAATATCACCGGAGTTTGACCTATTTTCCCTTgaat
tttgctttatttttctgTCGGGTAATGAAGTTGATGTTTTCAGAGCTTTT
TACGCAATTTTAAAAAGGAAAGCGGTTACACTAGAGACTCAGAGAGTAGA
TTATGCTGGAGGATAAAAAGAATATATACTTCTGAACTAGATGAGCTAGT
AAATTGCATGAAAACATTTCATAGACAAATTAGACCTCATTTGATAGTGG
TGCCAAAAATTTCTGGTCCAAACACAATTAAAGCACACTTCTCACTTTAA
GAAAAATTCCAGTCACTCTATGAAaccacaaatatcttttttggaatttt
tccaaACTATCTACAATATCTATTGCTTACCGCACTATCGCTCTTATTAA
GAACAAATGATAACAGTCTTTTGTATTCACTTTACCAATTTTCAGATCGT
CGCCAGCGAAAAAGAAAtgaacttaagggctctgaccatagtccaaaaat
tgattttggtatttgaacataaaagttacatttcaggttccttaacactt
ttaacaaagaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNgtgcgcagagtcatttacagat
ttttcttgtaacaatgagaagacaatggatctctcttgggagcaacgaga
gaagttaatccacctattctaatccgttggtcaaaagttatgagtttttt
taagcaaaatccagatgaaaaattgatgaaaaaccactattttgaagatt
tcgagacaaacaagcatttacaaaaattttccgcaaaaatttttattgtt
cggtaaaagatacaccatctattgggaaaagattttcaaaatgttttttc
ttcgccgaaactaagctcttcaaagttgaaatactcttcctcgcaaaagt
cttcattttcttcttcatcaaattttttcaatgcaattcttgaattttca
gattcaggaatagtttgtctaacagaaaatgtatgacatgccatagtttt
attggttacatcagtcagaaaacacattttaaacacggcaattatgaaaa
attcactatggtcagagcccttaataggggtggaaaataaaattgatgct
ctctaattcgacgttctactattgaGACGCACCatcattcgataatattg
aaaggcACCGTCAACAAGATACTCTCACTAACGACGCTCTGCTACCCTTA
TTCTGTGAACATCcaatttctcttgaaaatctACTTAGAGAAAGTCGACT
GTAACTTCAAACAAATAAAAGCGAAATATCGAACGATTACAAATTTTCTA
CTTAAATAAAGTCTTAAAATTGAGGAAATATAAACTTAAAATTCCTGAAT
TGTTTAATATTTGTCTCAATTTAATCGAGAGTCCTGATGTTTTGTTAAAT
TAGAAAGTTTCTAAGGTggaattctttttgtttttttacagcTGGTCGTT
TGGTCGGTGCAGTGTGCGCCATGACAGGTATCCTCGTGATTGCAATGCCG
ATTCCTATCATTGTCAATAATTTCACACGACAATATCAACGATTGAAACC
AGCATCAAAATACTGGGAAGATTTTCAAGACACGCGGAAATTATCCGGTG
AGGGTACGGACGAAAACGGAAAAACAGACCGGAAAACTAGTCACGTGATT
GGATTATATGAAGTAGACATTAATAAAAATGAAGCCAAAAATGCAACGGT
GGTTAGTAGTAACCATAGCAATCATGTAAATGGTAGCACAACCAAAAATA
ATGGTGACGTCACTGAAATCGGTTTACCGAATGGGAAGGTTGAAATCGCC
CATACAGCGCTTTGAGAAAAAGTTTTCGGGCTAAAGAGAGCAAAAGAGGG
GCCAAAATACTTTTTATGGACAATAAGGGTAAAAGACATAGTATTATGGG
TACTATTTACCAAAATTTggggaaaagtgaaaaatattcaaacTCACGTT
CGATATaaagaatatatttattttgataactttttttataaacatttgaA
TTGATATATATTcgtaatctttaaaaaacttttttttcgtttagattttt
tttggagGAATTGACGATGTCAAAACTTTCGACCTCTGCCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048273-exon-scaffold_142-1491911889:170729..170852 | TCONS_00048273-exon-scaffold_142-1491911889:170729..170852 | Clytia hemisphaerica | exon |
| TCONS_00048273-exon-scaffold_142-1510915933:170729..170852 | TCONS_00048273-exon-scaffold_142-1510915933:170729..170852 | Clytia hemisphaerica | exon |
| TCONS_00048273-exon-scaffold_142-1575043694:170729..170852 | TCONS_00048273-exon-scaffold_142-1575043694:170729..170852 | Clytia hemisphaerica | exon |
| TCONS_00048273-exon-scaffold_142-1491911889:186425..187513 | TCONS_00048273-exon-scaffold_142-1491911889:186425..187513 | Clytia hemisphaerica | exon |
| TCONS_00048273-exon-scaffold_142-1510915933:186425..187513 | TCONS_00048273-exon-scaffold_142-1510915933:186425..187513 | Clytia hemisphaerica | exon |
| TCONS_00048273-exon-scaffold_142-1575043694:186425..187513 | TCONS_00048273-exon-scaffold_142-1575043694:186425..187513 | Clytia hemisphaerica | exon |
| TCONS_00048273-exon-scaffold_142-1491911889:190070..190720 | TCONS_00048273-exon-scaffold_142-1491911889:190070..190720 | Clytia hemisphaerica | exon |
| TCONS_00048273-exon-scaffold_142-1510915933:190070..190720 | TCONS_00048273-exon-scaffold_142-1510915933:190070..190720 | Clytia hemisphaerica | exon |
| TCONS_00048273-exon-scaffold_142-1575043694:190070..190720 | TCONS_00048273-exon-scaffold_142-1575043694:190070..190720 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_142 | supercontig | scaffold_142:170729..190720 + |
Blast
BLAST of TCONS_00048273 vs. Swiss-Prot (Human)
Match: KCNA1 (Potassium voltage-gated channel subfamily A member 1 OS=Homo sapiens GN=KCNA1 PE=1 SV=2) HSP 1 Score: 259.996 bits (663), Expect = 3.385e-78 Identity = 168/391 (42.97%), Postives = 249/391 (63.68%), Query Frame = 1
Query: 205 KIDGDDKKPNELVTFNVSGRKFITTSHTLYNFPDSLIGTSENRAKLKRTKDGEIFLDRHAIVFESVLTFYQTG-IFEPPSQVNQNIFVGDIKYYELVEEAMQSGLK--GF-DNKVIPMPERLVQRKIWTLLEYPDSSFMARIVSMFSLLVIITSIVTFCWETVPEYNTNKVNYDDLSPGKQLTI----KILDD----IELFCIVYFTFEIILRFVCSPKKWSFMKDILNIIDIVSILPFYVTL---IFSMEG------SVSIYXXXXXXXXXXXXXXXXSRHSNEMKILGIAVRESGREXXXXXXXXXXXXXXXSSAVYYAEDGVPGTKLVSIPGAFWWSIVTMTTVGYGDEVPQSIPGRLVGAVCAMTGILVIAMPIPIIVNNFTRQYQR 1314
+ D DD + E V N+SG +F T TL FP++L+G + R + E F DR+ F+++L +YQ+G P V ++F +IK+YEL EEAM+ + GF + P+PE+ QR++W L EYP+SS AR++++ S++VI+ SIV FC ET+PE +K + T+ I D +E CI++F+FE+++RF P K F K+I+N IDIV+I+P+++TL I EG + S+ LR +RLVRVFR+FKLSRHS ++ILG ++ S RELG+L+FF+ + V+LFSSAVY+AE + SIP AFWW++V+MTTVGYGD P +I G++VG++CA+ G+L IA+P+P+IV+NF Y R
Sbjct: 27 QADHDDHECCERVVINISGLRFETQLKTLAQFPNTLLGNPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDMFSEEIKFYELGEEAMEKFREDEGFIKEEERPLPEKEYQRQVWLLFEYPESSGPARVIAIVSVMVILISIVIFCLETLPELKDDKDFTGTVHRIDNTTVIYNSNIFTDPFFIVETLCIIWFSFELVVRFFACPSKTDFFKNIMNFIDIVAIIPYFITLGTEIAEQEGNQKGEQATSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEAEEAESHFSSIPDAFWWAVVSMTTVGYGDMYPVTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 417
The following BLAST results are available for this feature:
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