TCONS_00048261 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048261
Unique NameTCONS_00048261
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1392

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048261 ID=TCONS_00048261|Name=TCONS_00048261|organism=Clytia hemisphaerica|type=transcript|length=1392bp
GCCACATTTTTGCCCACTTAACAAACTGTAAGCCACAAATCAGTGCAGCT
AATGAAAAATTTAGCCNAGCTAATGAAAAATTTAGCCCTTTGCTGTCAAT
GCTGAAAAGAAAGTATATTTCTGACTGTTTCCATTATTGAGAACTCAGCC
TTCAAAATCTTTTGGTAGGGTCAGCCACATGACCAGTAAGCCACATTTTT
TGCCCACACTTCATTTGCTTGCAACTCCCCTTTAAGTAAGCCACAAAAAT
TCGCCCTTTATGCAATGGATAGCTAATGTCCTCAGCTTAACCACCAAAGC
AATCCTAAGTGTAAGCCACATAATTTTCCCAAGTTAGTggctgacagtaa
aaatgtcacaaaacaggggtttatttttgattgggatCAACTGCTTTTCA
TTGTGTTTATGGCACATTTGAAACTCAATCTTCACCTCACAAACGGTGGC
AGCCTCAAATCCTGGAAGTTTGCCTGTTATTATAAATGTGAATCTTTTTT
GATGCTCAAGTTTTttattattcctgattattcaACTGATATTCTGATTA
GCAAAACTTATGCAAAAGGTCTTAGAAGAGACAGTTAGAAACCTTgtgac
ttttttttgcttgcaacAGGTGGCAAAATAAAATCTGGCAAAATAAAGTC
TGATTAAAGTAGAGATTTTCCTAGAATATATACAAAATGATGGCTACAAA
GAAAGTGTACAATAATCAAAATCCAAAGTAATTTCATATCTTGAAAATGA
AATGGTTTTCAACGGAACCCAAGATTTATTTTATAGCTAATGGTTTTACT
GTATCATGCTTGCACCAACATGGTAAATATTTTGTCATTTCTATCCATAG
ATGTCATTATGAACAGGATAGGAAAGGGCTTAAACTAATTTCTTTTAGGG
ACGCTCCAATTTGTATAAATCTGTTCGATGAAGAGACTGAGAATTTTTTA
TTGATAGCTTttacaataaataaattttgtgatTATATTGATTATATTCT
ATTTTATTGTATTATGATTGTTCCTTCCTATCTAGACCTTTaatgtttta
aataaaaaattcaatgacCTGTTGTTGGAATGAAGGATTATAAACCTCTT
TACAATCATTATCTGCCCAAAAGgGGTCCAAGCTTTGCTATTTACTATCT
ATATGGAACATTGGTGATTAATGGAACATTTGCTATTGGTACCTTTGCGT
ATGGATGTTATGATAAAGAATTCAGGAAACAACTGATCGATACTGTCCCT
ATAACCAAACCTGTTTTTGAATTTCTCACTGGACCTTTCAAAAATTAACA
TAAATATTTTCGTAGCTTttagatatatatttttaaaggaTTTTGTATAT
AGATTTTATACATAGGCGATTATTTGAATTGAATACAACTCG
Run BLAST on NCBI

transcript from alignment at scaffold_142:28310..30421+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048261 ID=TCONS_00048261|Name=TCONS_00048261|organism=Clytia hemisphaerica|type=transcript|length=2112bp|location=Sequence derived from alignment at scaffold_142:28310..30421+ (Clytia hemisphaerica)
GCCACATTTTTGCCCACTTAACAAACTGTAAGCCACAAATCAGTGCAGCT
AATGAAAAATTTAGCCNAGCTAATGAAAAATTTAGCCCTTTGCTGTCAAT
GCTGAAAAGAAAGTATATTTCTGACTGTTTCCATTATTGAGAACTCAGCC
TTCAAAATCTTTTGGTAGGGTCAGCCACATGACCAGTAAGCCACATTTTT
TGCCCACACTTCATTTGCTTGCAACTCCCCTTTAAGTAAGCCACAAAAAT
TCGCCCTTTATGCAATGGATAGCTAATGTCCTCAGCTTAACCACCAAAGC
AATCCTAAGTGTAAGCCACATAATTTTCCCAAGTTAGTggctgacagtaa
aaatgtcacaaaacaggggtttatttttgattgggatCAACTGCTTTTCA
TTGTGTTTATGGCACATTTGAAACTCAATCTTCACCTCACAAACGGTGGC
AGCCTCAAATCCTGGAAGTTTGCCTGTTATTATAAATGTGAATCTTTTTT
GATGCTCAAGTTTTttattattcctgattattcaACTGATATTCTGATTA
GCAAAACTTATGCAAAAGGTCTTAGAAGAGACAGTTAGAAACCTTgtgac
ttttttttgcttgcaacAGGTGGCAAAATAAAATCTGGCAAAATAAAGTC
TGATTAAAGTAGAGATTTTCCTAGAATATATACAAAATGATGGCTACAAA
GAAAGTGTACAATAATCAAAATCCAAAGTAATTTCATATCTTGAAAATGA
AATGGTTTTCAACGGAACCCAAGATTTATTTTATAGCTAATGGTTTTACT
GTATCATGCTTGCACCAACATGGTAAATATTTTGTCATTTCTATCCATAG
ATGTCATTATGAACAGGATAGGAAAGGGCTTAAACTAATTTCTTTTAGGG
ACGCTCCAATTTGTATAAATCTGTTCGATGAAGAGACTGAGAATTTTTTA
TTGATAGCTTttacaataaataaattttgtgatTATATTGATTATATTCT
ATTTTATTGTATTATGATTGTTCCTTCCTATCTAGACCTTTaatgtttta
aataaaaaattcaatgacCTGTTGTTGGAATGAAGGTGAGTGAAACAATT
ATCTGCCACACTCCCCTTTGTTATTTTGAAGTATAATTTATGAGTATTCT
TCTgtcagaaaaatgtttttgtttacattgCCATTATTGAATGCCATCCT
ATCCTTTCCTATCCATTCAAAAAAGGCTAAGCTTATGGACCCCcatttca
aaagaagcaaaaattttaactttattttttagGACTATGAGTTTTATTCC
TTGGAGGACTTATAGCTTTTGTGAATTGGAATAGGATGGTTCCAAGGAAA
AGCAGCAGTGcaaaattctagaaaaaaacTTGATAAAACTTGTCTTATAA
CTTTAACAATATATGATAACATGTTTTTTAGGATTATAAACCTCTTTACA
ATCATTATCTGCCCAAAAGGTTAGTTTGCTTTACTTGACAAAGTTTTACG
AAGAACCCTTCAAAAATGTAAGAAACAATAGATTGAAATAAGAGCTAAAT
TCATTGGCCAATTTTATGAGTAATAAATAAGGTAcatttaaaataatttc
aacaaatttttttcgTCCAAAAGCTTTTCATTATATACTTTACATGTTTT
ACAGGAGGCTTTATATATAAAGTACTTGATAATTGTATggttattttaaa
ttatttttacctCAAGAAACTTTAAATTATATAAtctgatatttctttgt
tttttaggGGTCCAAGCTTTGCTATTTACTATCTATATGGAACATTGGTG
ATTAATGGAACATTTGCTATTGGTACCTTTGCGTATGGATGTTATGATAA
AGAATTCAGGAAACAACTGATCGATACTGTCCCTATAACCAAACCTGTTT
TTGAATTTCTCACTGGACCTTTCAAAAATTAACATAAATATTTTCGTAGC
TTttagatatatatttttaaaggaTTTTGTATATAGATTTTATACATAGG
CGATTATTTCAATTGAATACAACTCGATAATAgcttttcatttgtttata
acCCACCATTATAAGTATGGAACTATAAGGNCTAGGCGATTATTTGAATT
GAATACAACTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030723XLOC_030723Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048261-exon-scaffold_142-1491911889:28310..29394TCONS_00048261-exon-scaffold_142-1491911889:28310..29394Clytia hemisphaericaexon
TCONS_00048261-exon-scaffold_142-1510915933:28310..29394TCONS_00048261-exon-scaffold_142-1510915933:28310..29394Clytia hemisphaericaexon
TCONS_00048261-exon-scaffold_142-1575043694:28310..29394TCONS_00048261-exon-scaffold_142-1575043694:28310..29394Clytia hemisphaericaexon
TCONS_00048261-exon-scaffold_142-1491911889:29741..29778TCONS_00048261-exon-scaffold_142-1491911889:29741..29778Clytia hemisphaericaexon
TCONS_00048261-exon-scaffold_142-1510915933:29741..29778TCONS_00048261-exon-scaffold_142-1510915933:29741..29778Clytia hemisphaericaexon
TCONS_00048261-exon-scaffold_142-1575043694:29741..29778TCONS_00048261-exon-scaffold_142-1575043694:29741..29778Clytia hemisphaericaexon
TCONS_00048261-exon-scaffold_142-1491911889:30067..30308TCONS_00048261-exon-scaffold_142-1491911889:30067..30308Clytia hemisphaericaexon
TCONS_00048261-exon-scaffold_142-1510915933:30067..30308TCONS_00048261-exon-scaffold_142-1510915933:30067..30308Clytia hemisphaericaexon
TCONS_00048261-exon-scaffold_142-1575043694:30067..30308TCONS_00048261-exon-scaffold_142-1575043694:30067..30308Clytia hemisphaericaexon
TCONS_00048261-exon-scaffold_142-1491911889:30395..30421TCONS_00048261-exon-scaffold_142-1491911889:30395..30421Clytia hemisphaericaexon
TCONS_00048261-exon-scaffold_142-1510915933:30395..30421TCONS_00048261-exon-scaffold_142-1510915933:30395..30421Clytia hemisphaericaexon
TCONS_00048261-exon-scaffold_142-1575043694:30395..30421TCONS_00048261-exon-scaffold_142-1575043694:30395..30421Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_142supercontigscaffold_142:28310..30421 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.56919	1.63936	2.67227	3.50899	2.4272	0.876524	0.985269	1.77079	1.90976	1.24647	1.17996	2.21115	1.11851	1.00611	1.31629	1.3549	1.11527	1.6501	0.77236	1.03165	2.5458	1.77731	1.73795	1.91878	1.15192	1.70761	1.79689	1.22539	1.47312	2.27803
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048261 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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