TCONS_00048225 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048225
Unique NameTCONS_00048225
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length814

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048225 ID=TCONS_00048225|Name=TCONS_00048225|organism=Clytia hemisphaerica|type=transcript|length=814bp
AAAAAGGAAATCTTCTAGTATCCCTGGATGTTTCCTCACTATACACTAAC
ATTCCACATGAAGAAGGAATAGACGCCTGTTTATACTATGTAGAAAAATA
TAGAAACATACTACCAAAATTTGTTCCCAATACAACAATACTAAAAACCC
TGTTTCTTTTTGTGTTACAAAAtaactattttttatttaaatcgaCACTA
TATAAACAACTATGGGGAACCGCCATGGGAACGAGGCTAGCGCCGGCCTA
CGCGGATTTATTCCTTGGNAAACCCTGTTTCTTTTTGTGTTACAAAAtaa
ctattttttatttaaatcgaCACTATATAAACAACTATGGGGAACCGCCA
TGGGAACGAGGCTAGCGCCGGCCTACGCGGATTTATTActtggaaaattt
gaagaaacacATATCATAAACAGCCCATTCAATAGTTACATCAAGATTTA
TAAAAGGTTCGATATATTCATAATATGGAACggaaataaacaaaattttt
ttgacatgttcaaaaatatcaacactgtacataaacaaataaaattcaCC
ATTGAATTCTCTAAAACATCCATTAATTTTCTTGACACCACAATATACCT
GGACAAACCTACAGATACATATATGAGTAAACTTTATAAAAAACCAACTG
ATATGGATTCCCTTCTACACTACTCGTCATACCATCCGAAACACACCtta
attaacattatatataccCAAATACTTAGATACAGAACAATAACTACaga
caacaaaatttaaaaaaaagaactaATGAATCTTAAATCCACCCTTTTAA
ACAGAGGATACCCA
Run BLAST on NCBI

transcript from alignment at scaffold_141:6526..7339

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048225 ID=TCONS_00048225|Name=TCONS_00048225|organism=Clytia hemisphaerica|type=transcript|length=814bp|location=Sequence derived from alignment at scaffold_141:6526..7339 (Clytia hemisphaerica)
TGGGTATCCTCTGTTTAAAAGGGTGGATTTAAGATTCATtagttcttttt
tttaaattttgttgtctGTAGTTATTGTTCTGTATCTAAGTATTTGggta
tatataatgttaattaaGGTGTGTTTCGGATGGTATGACGAGTAGTGTAG
AAGGGAATCCATATCAGTTGGTTTTTTATAAAGTTTACTCATATATGTAT
CTGTAGGTTTGTCCAGGTATATTGTGGTGTCAAGAAAATTAATGGATGTT
TTAGAGAATTCAATGGtgaattttatttgtttatgtacagtgttgatatt
tttgaacatgtcaaaaaaattttgtttatttccGTTCCATATTATGAATA
TATCGAACCTTTTATAAATCTTGATGTAACTATTGAATGGGCTGTTTATG
ATATgtgtttcttcaaattttccaagTAATAAATCCGCGTAGGCCGGCGC
TAGCCTCGTTCCCATGGCGGTTCCCCATAGTTGTTTATATAGTGtcgatt
taaataaaaaatagttaTTTTGTAACACAAAAAGAAACAGGGTTTNCCAA
GGAATAAATCCGCGTAGGCCGGCGCTAGCCTCGTTCCCATGGCGGTTCCC
CATAGTTGTTTATATAGTGtcgatttaaataaaaaatagttaTTTTGTAA
CACAAAAAGAAACAGGGTTTTTAGTATTGTTGTATTGGGAACAAATTTTG
GTAGTATGTTTCTATATTTTTCTACATAGTATAAACAGGCGTCTATTCCT
TCTTCATGTGGAATGTTAGTGTATAGTGAGGAAACATCCAGGGATACTAG
AAGATTTCCTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030687XLOC_030687Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048225-exon-scaffold_141-1491911889:6526..7339TCONS_00048225-exon-scaffold_141-1491911889:6526..7339Clytia hemisphaericaexon
TCONS_00048225-exon-scaffold_141-1510915933:6526..7339TCONS_00048225-exon-scaffold_141-1510915933:6526..7339Clytia hemisphaericaexon
TCONS_00048225-exon-scaffold_141-1575043694:6526..7339TCONS_00048225-exon-scaffold_141-1575043694:6526..7339Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_141supercontigscaffold_141:6526..7339 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0586409	0	0.0663962	0	0.632644	0.499924	1.8848	2.18802	0.197662	0.550882	0	0.273382	0.156001	0	0.0332982	0	0	0	0.249346	0	0	0	0	0	0.12592	0.337142	0.0804083	0	0.0650868	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048225 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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