TCONS_00048214 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048214
Unique NameTCONS_00048214
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2293

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048214 ID=TCONS_00048214|Name=TCONS_00048214|organism=Clytia hemisphaerica|type=transcript|length=2293bp
gcATGCGCTTCTCAAATTTTACTCGAGTCGAGTAAATATTTGGTTCTGAT
CTGCTGTTTAATTTTCTATTACAGTTGTTgttatggaaaaaaaatttgca
aaatgatAAACGTGGAAATACTCATTTGTGTTCGGTAATGGTAGACGATT
ATATCGTCCGGTAGTAAAGGCAGGAAAACGTAAACGCAGAGTCTTTCTAA
CATAGGAAACTTAGGTCGGCCGTCTCAGGTATAGTTGTTATACTACATAC
ATACAATTATATCTACTTCTGTATTCTTTAGCTAGGCAGGGGTCTACCAT
ACacaaaaaatcctaaaaatgaaTTCCGAAAGAAAGGCAATCAGAGTTTG
GTGTGATGGGTGTTATGATATGGTTCATTTTGGTCACGCAAATCAAATGA
GACAAGCAAAAGCGATGGGTGATTATTTGATTGTAGGAGTTCACACCGAT
GAAGAGATCAGGCAAAATAAAGGTCCTCCAGTCTTCAACCAAGAAGAAAG
ATACAAGATGGTGAAAGGGATCAAATGGGTGGACGAAGTAGCAGAGGGTG
CACCGTATGTCACAAGTCTGGAAACGTTGGATAAGCATAATTGTGATTTT
TGTGTCCATGGAGATGATATCACCACGACTGCTGATGGAACAGATACTTA
TCATATTGTCAAAGCCAACGGAAGATACAAGGAATGCAAACGAACTGAAG
GAGTATCAACCACTAACTTAGTAGGACGTATGTTGCTCATGACAAAAGAG
CACTTCGATCACGGCCAACCCATCAGTAGTTTAGACCCCAAAGCCTTGGA
GACGACACGATCAGACAGTGATGCTCGCAGTCCTTACACCGGTGTTTCAC
ACTTCTTACCCTCTTCGCAAAAGATTGTCCAATTCGCTGATGGCCAGGAC
CCAAAACCAGGAGATAAGATTGTCTACGTTGCTGGAgcctttgatctttt
tcatgtGGGTCTGTTAGACTTTTTAGAGCAAGCAAAGAAATTAGGTGACT
ACCTTATTGTTGGTCTTCATACAGATGATGACGTCAATAGATACAAAGGA
AGCAATTATCCCATCATGAATTTACACGAACGTGTCTTGAGTGTATTGGC
CTGCAAGTATGTCAACCAAGTTATCATTGGAGCTCCTTATAAAGTCACCA
AAGAAGTCATCGACCAATTCAAGGTGAACGCAGTAGCACATGGAACCACG
CGCATCACTGCGGACGTTGATGGAACCGATCCGTATGAAATTCCAAAGAA
ACTGAACATTTTCCATACTGTGGAAAGTGGAAACCCATTAACGACTGCTG
ATATCGTCCAACGAATCATCAGACACAAACTTGAATTCGAAACAAGAAAC
AAGAAGAAAGAGATCAAAGAACTAGCTGTTTTGGATTACCTGAACAAAAC
CAAAGAATCCGGCGAAGAAAAATCTGATACCAACCCTGAACTTGCTACCG
TGTGAGACGTTCTCTTTAGTTCCTTAACACGGATATTCTGGATACGAACG
TTGACCAGATACTTTCTCCAACcctgtcacaaaaacttcagAAAAACCTC
TAATGGGATATGCGTAGTAAATCATATATTAACGGTGCTGNTTGACTTTA
AGGACAGTTTTCCTGTTCCACTCATGAATGGGAGACGCATATTTAGGAAA
TAATGTTTGTTGTATGTCTTCATTTTTGTCGTCACGAATTCAGTTATGAA
AAAGGGTGGCATAAGGTGCCTTTATATTAggatttttaccttttttgcct
tttttgcctCTCCGTGAcaattcttctttatttttccattttcattttcg
gttcttaatttattgttttgtattatttcttttcttatatttttattttg
tttattatttCTGTTTATTATTTCGTTTCTCTTACACGAAACCAGAAAGC
CTAGTTTAAGCTATGACTTAGACGTCAAGCTACGTTAACGTCAACGTTCT
TGACCAAGCTACGTCGCTTAAACCTAAGAATTTTCTTACGTCGTAAATGC
ATGCCATTACGCTGAAAACCTAATTGATGCTATTCGACACCATATTACAT
CTGATtgctttttctttgaaattatccatatttttctgttttcattttgt
ttatttctacTCTACTAGTATTTTGTTTATAATGAACTTTGAATATGCTA
TGTCATTTTAATTGTAATGTTTAATTTATATTTCCTGGAATATAATGGTT
TTAGTCGCAAAGAATTATTTAGTGCGCCATGGATTGTATACAGTACACAC
ATGATggaattggccaaaaaattaagaattagCTTAGAACACC
Run BLAST on NCBI

transcript from alignment at scaffold_141:493526..508731-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048214 ID=TCONS_00048214|Name=TCONS_00048214|organism=Clytia hemisphaerica|type=transcript|length=15206bp|location=Sequence derived from alignment at scaffold_141:493526..508731- (Clytia hemisphaerica)
GCATGCGCTTCTCAAATTTTACTCGAGTCGAGTAAATATTTGGTTCTGAT
CTGCTGTTTAATTTTCTATTACAGTTGTTGTTATGGAAAAAAAATTTGCA
AAATGATAAACGTGGAAATACTCATTTGTGTTCGGTAATGGTAGACGATT
ATATCGTCCGGTAGTAAAGGCAGGAAAACGTAAACGCAGAGTCTTTCTAA
CATAGGAAACTTAGGTCGGCCGTCTCAGGTATAGTTGTTATACTACATAC
ATACAATTATATCTACTTCTGTATTCTTTAGCTAGGCAGGGGTCTACCAT
ACACAAAAAATCCTAAAAATGAATTCCGAAAGAAAGGCAATCAGAGTTTG
GTGTGATGGGTGTTATGATATGGTTCATTTTGGTCACGCAAATCAAATGA
GACAAGCAAAAGCGATGGGTGATTATTTGATTGTAGGAGTTCACACCGAT
GAAGAGATCAGGCAAAATAAAGGTCCTCCAGTCTTCAACCAAGAAGAAAG
GTAGTTTTACATGTTTTTTTTGCTCTGTCTAGACCATTGATTTATGAATA
TGATTGTTGGAGATTATGTTCTCACACTGCGTCCTTGATCTTGTAGCTAA
TTCTTTACTCTTGGTGGCAATGATTAGGAGCCGGCTAGTCAATCTTCTTG
TTCCAAATCGTTTCATTCGGGAAATATGAATTTGCTATTTAGGCCATTTA
GGAGGCTGACTGCGGGGTCTTTGTTGATGGCGAACACATCTACCGTGAGT
ATCACAGCTCGAATAAATGTTTTCTCTATGAAAACTTGGCCTCTGGTACC
CAGGGAGGGTAGCACACATCACCGCCATAGATTCGAGCCCATGACTTAAT
TAATTGCTTGGGGATGACACCTTGTCTATTGTGGTGCGAAAACAGGCGAA
AAAAGAATCTTGCTTCAGGCAGGACGTAATTCTCATAATCTAGTTTGAAA
TATGGGAAACTGGGTACTAGGGTTACGAATTTACACAGATGACCGCGCCC
GTCATATAAAATTCTAGGAAACAATAATATAGTGTGCATCAGGCTTTATT
ATTGAAGTGTGTTAAGACCCTTAAAACGCCCATTTCGAAAATACTGCAGG
ATTCCGCTCGATATGTTTGGTGAGTTATCCTGGCGATTTTAAAAATCGAA
ATAAACAAACAAAAGGTCCGCAAACGTTGACTTCCGCCATTTCCAAAAGC
AACCGCAACGCTTCGTGCAAAGACCAGAAACACAAATTTCTGCCTGGTTT
TAATCAAATTTTGTGAAGATGTCTGATAATGGCCACGAGACAAATGGTAA
TGCTTCCAAGAAGAGAAAACAGATTAGAGTTTGGTGTGACGGTTGTTATG
ATATGGTTCATTTTGGTCACGCAAATCAAATTAGACAAGCAAAAGCGATG
GGTGATTATTTGATTGTAGGAGTTCACACTGATGAAGAAATCAGGCAGAA
TAAAGGTCCTCCAGTGTTCAATCAAGAGGAAAGGTATAGCCTATATTTTG
TGAGAATAGACTCTTCATAACAGGAACAGGATTGACGATCAAATCGATAA
CCAGACCAGATCAAACAAACACCCAGACGATCTCATCAATCGAACGGAAT
CGACGATCGAACCAGTCAAACCAAATCGAATGCAATCGACCGATTGAAAT
TCGATTGTTGAACGCAATCGAATCTCAATCGAAAGTCAAAATTCTGGGTA
ATATTCGATTGGTTTGATTGTTGTTCGACTGGTTCGATCGTCGATTTGGT
TCGATTGAGCGAGATCGTCTGGCTTTATTCTTGCAGCTTCCCAACATCCA
AGCTCTCAAACATCACAAGCCGAGTGAAATTACTTTCGATTTCCCCTAGA
AATTATGCGATGAACAATCCGGGGGTCAATGAATTGACGATCGAACGCAA
TCGAACGCAATCGAACATCAATCAACCGCAATCGAATATCAATCGAATCT
GAAAATTGCAGTGATATTCGATTGAGATTCGATTGAGTTCGATAATCGAA
TTTCAATGTCGATTGCATTCGATTTGGTTCGACTGGTTCGATCGTCGATT
CCGTTCGATTGAGATTGTCTGGAAACACAATTCATTTGTTTAGTAGGAGA
ACACAGGAAGGCAGAACCCAACAGTCTTTTGGATCAGTTTGAATAGCTAA
TAACTAACAGTTAGTCACACTAGGAAATTAAGCTTTCAGAAAAAACAACA
TCAGTCATCTACAGGATGTATTTCAACAACAAGGATGAGAGTTACCTGAA
TCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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CAACCAACCAAATTTTGTCATTCAATTCCCGAGACAGCGCTTCGATTTTT
AAGGCCTTGTTTATACGCTAAAGTAAAAATAATTCCGCTCATGTACTTAC
TTTTTTGATACTTTTTGAAGTCTTCTTTGTTCGTCTCAACAATCATCCAA
TTTGAGAAATCCGATGATGGACCATGACTTTGATGCTATTTGAATCAGCT
CTCCTAAGAGGAAAGTAATTCGGNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNTTGACGTGTGCAAAAGTGCAGTGGGTATTGAAGCATGTACCACTT
TTAATTGAGGAAGAGCACATTCTGGGGTGAAACTGTGCACAGTTAGTTCC
AGCATTACATCCATTTGGACCTTTGTTTCCGTATTTCATGAGTTTTGGAC
AGGCTTTAGGATGGGTGTACTGGCAGTTTTTACCGCGAATACCATGCTTA
CATTTTCCTTTCATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGTGGGTTGGGCTAC
CTTTGGCCTAGGCCCCGGGATCAGCAGCCTCTACCCGGTATTCGTTTTCT
TCTTGACTTTTGTTTATGTTTATGTTTTTTCTGTTGCTCTGAAAAAACAA
TGGCCTCAGCTCTCCAAGGCCTTATTCACTAATTCTTAATGGAGTGAATT
TTTTTATCTGTGTCTTTATGTAAATGGGTCATTGCTTTTTTGCCTATCCG
GCGGTGCGCGGATCTAGGTGGGTTCTGCCTCCCCCGTAATCTTTTTTTGG
GAAGTTGCTCTTCAAATTGGTTTTCAAGGTTGGCTTGGCTCAAATTTTTT
CATCTATGGCTCAAATTGTAGGCAATTTCTCAAAGTTTTTGAAAATGTTA
TTTTCATTAAAAAGCGCCGGGTTATTTTTTCATGAATCCCTTTAGAAGTT
TTGTGGCGCATTTTTTTGCTTGAGAGTCAAGTAAACGATATAGTGCTTTC
GCAGCATTAATCTTTGATATGCATTTTGGTGGGATGCTAGTGTGACTAAC
TGACTAATCTTTTTAATGATAACTTCATCTTAAACTGCAGCTACCTACCG
TAAGTTGGTCTAATATCAACATCCCTCATCTAATTCATTCCGACACCCTT
TTTTAGAAGAGACAGGAATGATATGAAAGCTTGAATCACTGATTGAAAAA
TAATAATTCCTTTCTGACCATTAAAAGCAAAGAAAAACAGTTTCAACCTT
TCTATCAATTTCAGCTGATAAAACGGGTGACGAAATTAGAGGAGGGATGA
TGTTGACATTAGACCAAGTTACAGATAGCAAGCAGTTAGTCACACTAGCA
TCCCACTAAAATGTGTATCAAAGATTAATGCTTCGAAAGCGCTATATCGT
TTTATTGACTCTCAAGCAAAAAAATGCGCCGCAAAACGGGATTCATGAAA
AAATAACCCGGCGCTTTTTAATGAAATTGACATTTTCAAAAACTTTGAGA
AATTGCCTACAATTTGAGCCATAGATGAAAAAATTTGAGCCAAGCCAACC
TTGAAAACTAATTTGAAGATCAACTTCCCAAGAAAAGGATCTATGGGGGA
GGCGGAACCCACCTAGATCCGCGCACCGCCGGATAGGCTATCTCCCGGAA
ATTTTGCCGGACCTCAAACACTGACCCATTTACATGTGCGGAATTGTTTT
TACTTTAGCGTATAAACAAGGCCTTAAAAATCAAAGCGCTGTCTCGGAAA
TTGAATTGACAAATTTTGGTTGGTTGATTTTGGCTGCTGCACGTTTTATT
TTGTTTCCAACTTTCAAATTTTAATTAATATTGTCTTGCAAACTTGATTC
AGGTAACTCTCATCCTTGTTGTTGAAATGTATCCTGTAGATGGCTGATGT
TGTTTTTTCTGAAAGCTTAATTTCCTAGTGTCACTAACTGGCAAGGAGAA
GATAATTCATCCCGTTCGTACTGCTGGCTGAGACAGGGAAAGTAATGTAT
GTATGTGAAATAATTTCCAGACGATCTCAATCGAACAGAATCAAACAACC
AGTCAAACCAAATCGAACGCAATCGACCAATTGAAATTTGATTATGGAAC
GCAATCGAATCTCGATCAAATACTGTAAGTTGGTCTAATGTAGATAATTT
CTAATTTTGACACCCTTTTTAGAGATAGGAAATAATAGGAAGGTTAGAGT
CACAGACAAAAACGATTTTTTCCTCTCTTTATCGCTAAGCAACTAGAATA
AAAGTTGCCATCAGCGATTTAGACCTTCATTTCTTTTCATTTATTTGCAT
ATAAAAAAGCTAACATCGCAAATAAAATAAAAAAATTCATATTGTTGCTA
TCTCCAAACAAGGGTGTCAAAATTAGATGAGGGGTGTCAACATTAGACCA
ACTTACAGTATTACCACGATTTTCAGATTCTATTGATATTCGTTTGTGTT
TGATTAATATTCGATTGCGTTCGATTACCTTCGATTTTACTTGAATGTGT
TCAATTACTTCCGGCTAATGTTAATTTTGCTTACAGAATCAACACAGGAT
TAAAGGGGGTTAAAAACATTTTTTTTTCTTATAACAGGAACTTTTAACCT
CTTTTAGACCATAGACCAATCAAACGCAGTCAAATGACAATCAAATACAG
TCAAATGACAATCGAACCAATTGAATATTACCCAGAATTTTGACGTTCGA
TTGAGATGAAGTTGTGGTTTTTTACACTTTGACTATTGCTCAGTACCTTG
AGTGGTCCTAAATCCGACAGCCCTGCCTAAATCCGACCCTCCAAATAACT
GCTATGAAAAAAAATTCTATGTTTACAAACATTCCCTCTCCAAGTTGAAC
AATAATTTGAATAAACTATTGTATTGCAAGAAATCTTGAAACAAAACATC
TAACAAGATGACTATAATGTCAATATGTCAATGAATTAATGTGATCAAAA
AAGTGTGAGTTTGCAAAAATAATTACCTCTATTCTGAATCTGTTGCTCGT
GTTGCACGTTTACAATTTTGTAATTAAAAATTATGTTTTGTATAAGAAGC
AATTATTGTTATTTGGTTCAATTGGTTCAGTGTATCAAATCTTTCAGTTT
AGTTGACACTTTGATATCTTCATTACTTCATTGCGTCACAGCGAAAGATT
TGTTTTTATTTTAGTTTGTATCTATGAAAGACCCCATCGGATTTAGGCAG
GGCTGTCAGATTTAGGACCACTCACGGTATAGCCCTAAATCTCCATACAG
AACTTACTTTGTACCCAATGCAAGCACTTAAGCTAAAGGCGCTATGGTAT
AGTGGTCATTGACCTTGGTTGTTGCACAGGCGACTGAGGTTCGATTCCCA
CTTGCAGCGGTTCACTTGGCAAGTGAATGAACCTTCGCCCGGAAACCCAC
CGGGTGAACTTTTTTTTAAACATCACCCGGCCACTAACTGTATTGTAGTA
TATTTCTTTCATTTCCTCATAGTAACAATACTATATCTATAGCAGGCTTT
GTCATTTGAAAACTCCAGGCGTGTGGTCAATCGCACTCCTAAAAAGTACT
TTAGGCATGTGATAAGGAGTGCTATGCATAACTTTAAGTAGTAAAATCCA
AATTTATGGCGTGTGATTAATCACTCTCCTCAAAGATTTTAGGTGTGTGT
GGAGGTGTGCGCGTGCTATCACACGCCTCAAACGATGCAGCCTGCTATAG
TTATTTGATAAAGGTTTCTTTCTTTTTCTATTTAATGGTTTGATAAAGCT
AAAATATTTCAGCTTCCACAGTCCAATAATCAATCATAATCCTCTCAAAT
TGTATTTTTGATCACCTAAAAGTCTATTGCTGATGTTTCCAAACTGAAAT
GCAACCATAGTGCAATAGTAGAGCATCCCGCTACTATGTGCTAGGTTATG
GGGTCATACCAACTCCCTAGAACTTACTAGTTCAAAATGGTACTTGTTGC
CTCTATGCTAAGAAAATGAATGATCAAGGGTAAGTGGAGCTATCTTGGGA
TAAAGACCTTTCGGTAGATAGCTTTTGAAAAGGAGGCCTCGGTCTCTCCT
GAGTGCAGTTGCAGACTTTGATTACTTTTCACTTTTCTAACACACATGAA
ATATTTTTCCATGAATTAGATCCTTTTCATAATCCACATCCACAGCCCCA
ACCCAGATAGTTTGTTCACCTCAATGTTTTGATTCCTCTTTGCTTGTTGC
AAAGATTAGCTACAATTTGTAAAAAGAATGACAAATTATACAAATGTGTT
ATTTTAAATGCAGGATTATATCTACAGGAACAGACTGCGCAATCGAGGGA
ACTTCCTGACTCTTAGGCTAAAAAATCATGGTCCTTTGGGATCTTCAAAA
TAGGCCTATATTTATCTCCAAATGAGCCTGACTGAGCAAAAAACTGTAGT
AAAACAATTTCCCGCCTTTGGTAGATCAGAAGTTGATTTCTGCATAATTT
ATGCAAAATTGAAAACCTTCTTTACCATAAAACATTTATAACTTTTGACC
TTGGAAAGCTAACAACTCTATGCAAACTGAATTGAATCCAGTCAGGGTCA
GGTAGAGTAGAAATTGAGTCTAAATTGTTTGACGCACTAAACCCATATCG
CAAAAATAGCAAGTAAATCTCTCTATAATTTTTATATACTCTGCATGAAA
ATGACACAAAAATCATAAGATAGGAATTTGCTTTCTAAGGAAAAGCTTAT
GTTTCATGATTGAGATCCTTTTATAACACATTGTTTTCTCCAGATACAAG
ATGGTGAGAGGGATCAAATGGGTGGACGAAGTTGCGNTTCTCCAGATACA
AGATGGTGAAAGGGATCAAATGGGTGGACGAAGTAGCAGAGGGTGCACCG
TATGTCACAAGTCTGGAAACGTTGGATAAGCATAATTGTGATTTTTGTGT
CCATGGAGATGATATCACCACGACTGCTGATGGAACAGATACTTATCATA
TTGTCAAAGCCAACGGAAGGTAATTCTATCTGTATTTCACACTTGAGCTA
ATGAGAAAACGTGGAGTAATTCCTTAATTTGTTTTGTTCATAGTACAGAT
AGAGATTGTCCGTAGCTTGGTAATTGTCATATGTCGAAGATGTCAAAGAA
ACTTGTTATCAGTATTATTGGGAAGATTGAATTTTGTCACGAATGTCACA
CAGATCCTAAGGTTGGTTCCTTTACGACGTACGGCAACTGAAATTATTTT
ATCATAAAGTGGACATGATGATATTTGAATTGCCTCACTTCTACTATTTT
CAGATACAAGGAATGCAAACGAACTGAAGGAGTATCAACCACTAACTTAG
TAGGACGTATGTTGCTCATGACAAAAGAGCACTTCGATCACGGCCAACCC
ATCAGTAGTTTAGACCCCAAAGCCTTGGAGACGACACGATCAGACAGTGA
TGCTCGCAGTCCTTACACCGGTGTTTCACACTTCTTACCCTCTTCGCAAA
AGATTGTCCAATTCGCTGATGGCCAGGACCCAAAACCAGGAGATAAGATT
GTCTACGTTGCTGGAGCCTTTGATCTTTTTCATGTGGGTCTGTTAGACTT
TTTAGAGCAAGCAAAGAAATTAGGTGACTACCTTATTGTTGGTCTTCATA
CAGATGATGACGTCAATAGATACAAAGGAAGCAATTATCCCATCATGAAT
TTACACGAACGTGTCTTGAGTGTATTGGCCTGCAAGTATGTCAACCAAGT
TATCATTGGAGCTCCTTATAAAGTCACCAAAGAAGTCATCGACCAATTCA
AGGTAAGAAAATCATGTTTTTAGTAAAGAATGAGGATTTGTGCATCTAAT
GTTTTAGGGTGAATAACCAGATTGTTGATGACATCAAATTGTTGAAGACA
ACTGTAATTTATTCGATCCAAACACCAATCGAATAAATTTCTTACAACTT
CTCCACGGGAGACTGCACTTCCCTCGTATAGTCTTTTTGGCTAAAAACAA
ATTGAACATTTTAAGGTCAAATGATAACAGTGTGAATCTCAGTTAACTCA
CATTTTTCCCTGCTAGGTGAACGCAGTAGCACATGGAACCACGCGCATCA
CTGCGGACGTTGATGGAACCGATCCGTATGAAATTCCAAAGAAACTGAAC
ATTTTCCATACTGTGGAAAGTGGAAACCCATTAACGACTGCTGATATCGT
CCAACGAATCATCAGACACAAGTAAGAAAGATTTATATTTGAACTTAAAT
CTGTAGTGATAGAGGCTTTCAAATATGTGCTTTTCCTAATTTTGAACTAG
CTTTTTCATTAGGTGTTCTACTTTTTAGAAATTTTCCCTTAATTTTCTTG
ATATTTAATAAGCCAACTGATATTCAATCAAAGAAAAAAAAAAGATGATT
GTGTCTAATAGATGGATGCTTTTGAGCAGAACAGAACTATATTTGTTATG
AAACTGTCAATAGGTTTTAAATCTTCCTTAAAAAGATTAATAAGTTGGCA
AATGGGCTGTTCCATTTAATAAACATATAGGGGTGGATGAACCTTTTTCA
ATCCAAAAATAAAAATCTCGAAATTATGTGAATGTCCCCTGGAAAAACCA
AATTAGCAAAATAACCCTAGAATTCTATGGCTCTTGGAAAAATTCTTCTT
TATACCGTGAAGTGAGGTTGGACAAACTAAATACTTGATTTTTATTCGAT
TGCCATTTCCACTTTATAAGGAGGATTGCATTATGCTTTTCTGTTCTTTT
CTGACTTGAAAATTCATGTCGTGAGATCTTAGAGAGAATTAGAGATAACA
CATTAGCAATGTGGAGATGGATTTCTCCCAATTCACTGTCTCTGTCCAGT
CAGTAGAGAATTCACTTCCAGCTCTACGTAGTCGCAATTGAGCCATCGGG
TTCCACATGGACCCGTAGCTCAATGGTAGAGCAAATGCCCGCGAATGGCA
TGGTAGTGAGTTTGTGTCTCGCCGGATCAGTTAGTTTTCCAACGGTTCTG
GTGGCTGGTTAGAAGACAACATGAGAGCGACTGCATTCATTCACTCTTAT
TCCTTCAGACTTGAATTCGAAACAAGAAACAAGAAGAAAGAGATCAAAGA
ACTAGCTGTTTTGGATTACCTGAACAAAACCAAAGAATCCGGCGAAGAAA
AATCTGATACCAACCCTGAACTTGCTACCGTGTGAGACGTTCTCTTTAGT
TCCTTAACACGGATATTCTGGATACGAACGTTGACCAGATACTTTCTCCA
ACCCTGTCACAAAAACTTCAGAAAAACCTCTAATGGGATATGCGTAGTAA
ATCATATATTAACGGTGCTGNGTTCTCTTTAGTTCCTTAACACGGATATT
CTGGATACGAACGTTGACCAGATACTTTCTCCAACCCTGTCACAAAAACT
TCAAAAAAGCATCTAATGGGATATGCGTGGTAAATCATATATTAATGGTG
CTAGTTGACTTTAAGGACAGTTTTCCTGTTCCACTCATGAATGGGAGACG
CATATTTAGGAAATAATGTTTGTTGTATGTCTTCATTTTTGTCGTCACGA
ATTCAGTTATGAAAAAGGGTGGCATAAGGTGCCTTTATATTAGGATTTTT
ACCTTTTTTGCCTTTTTTGCCTCTCCGTGACAATTCTTCTTTATTTTTCC
ATTTTCATTTTCGGTTCTTAATTTATTGTTTTGTATTATTTCTTTTCTTA
TATTTTTATTTTGTTTATTATTTCTGTTTATTATTTCGTTTCTCTTACAC
GAAACCAGAAAGCCTAGTTTAAGCTATGACTTAGACGTCAAGCTACGTTA
ACGTCAACGTTCTTGACCAAGCTACGTCGCTTAAACCTAAGAATTTTCTT
ACGTCGTAAATGCATGCCATTACGCTGAAAACCTAATTGATGCTATTCGA
CACCATATTACATCTGATTGCTTTTTCTTTGAAATTATCCATATTTTTCT
GTTTTCATTTTGTTTATTTCTACTCTACTAGTATTTTGTTTATAATGAAC
TTTGAATATGCTATGTCATTTTAATTGTAATGTTTAATTTATATTTCCTG
GAATATAATGGTTTTAGTCGCAAAGAATTATTTAGTGCGCCATGGATTGT
ATACAGTACACACATGATGGAATTGGCCAAAAAATTAAGAATTAGCTTAG
AACACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030683XLOC_030683Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048214-exon-scaffold_141-1575043694:508232..508731TCONS_00048214-exon-scaffold_141-1575043694:508232..508731Clytia hemisphaericaexon
TCONS_00048214-exon-scaffold_141-1575043694:496663..496836TCONS_00048214-exon-scaffold_141-1575043694:496663..496836Clytia hemisphaericaexon
TCONS_00048214-exon-scaffold_141-1575043694:495880..496378TCONS_00048214-exon-scaffold_141-1575043694:495880..496378Clytia hemisphaericaexon
TCONS_00048214-exon-scaffold_141-1575043694:495461..495615TCONS_00048214-exon-scaffold_141-1575043694:495461..495615Clytia hemisphaericaexon
TCONS_00048214-exon-scaffold_141-1575043694:494361..494623TCONS_00048214-exon-scaffold_141-1575043694:494361..494623Clytia hemisphaericaexon
TCONS_00048214-exon-scaffold_141-1575043694:493526..494227TCONS_00048214-exon-scaffold_141-1575043694:493526..494227Clytia hemisphaericaexon
TCONS_00048214-exon-scaffold_141-1510915933:508232..508731TCONS_00048214-exon-scaffold_141-1510915933:508232..508731Clytia hemisphaericaexon
TCONS_00048214-exon-scaffold_141-1510915933:496663..496836TCONS_00048214-exon-scaffold_141-1510915933:496663..496836Clytia hemisphaericaexon
TCONS_00048214-exon-scaffold_141-1510915933:495880..496378TCONS_00048214-exon-scaffold_141-1510915933:495880..496378Clytia hemisphaericaexon
TCONS_00048214-exon-scaffold_141-1510915933:495461..495615TCONS_00048214-exon-scaffold_141-1510915933:495461..495615Clytia hemisphaericaexon
TCONS_00048214-exon-scaffold_141-1510915933:494361..494623TCONS_00048214-exon-scaffold_141-1510915933:494361..494623Clytia hemisphaericaexon
TCONS_00048214-exon-scaffold_141-1510915933:493526..494227TCONS_00048214-exon-scaffold_141-1510915933:493526..494227Clytia hemisphaericaexon
TCONS_00048214-exon-scaffold_141-1491911889:508232..508731TCONS_00048214-exon-scaffold_141-1491911889:508232..508731Clytia hemisphaericaexon
TCONS_00048214-exon-scaffold_141-1491911889:496663..496836TCONS_00048214-exon-scaffold_141-1491911889:496663..496836Clytia hemisphaericaexon
TCONS_00048214-exon-scaffold_141-1491911889:495880..496378TCONS_00048214-exon-scaffold_141-1491911889:495880..496378Clytia hemisphaericaexon
TCONS_00048214-exon-scaffold_141-1491911889:495461..495615TCONS_00048214-exon-scaffold_141-1491911889:495461..495615Clytia hemisphaericaexon
TCONS_00048214-exon-scaffold_141-1491911889:494361..494623TCONS_00048214-exon-scaffold_141-1491911889:494361..494623Clytia hemisphaericaexon
TCONS_00048214-exon-scaffold_141-1491911889:493526..494227TCONS_00048214-exon-scaffold_141-1491911889:493526..494227Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_141supercontigscaffold_141:493526..508731 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
58.8064	62.4294	67.1414	70.4434	247.392	197.883	300.55	284.008	237.261	207.6	230.372	259.273	240.411	295.159	174.287	147.318	100.985	121.375	373.283	363.367	238.579	238.156	84.1681	105.401	212.692	188.131	48.9882	66.1752	107.902	151.093
Blast
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BLAST of TCONS_00048214 vs. Swiss-Prot (Human)
Match: PCY2 (Ethanolamine-phosphate cytidylyltransferase OS=Homo sapiens GN=PCYT2 PE=1 SV=1)

HSP 1 Score: 465.692 bits (1197), Expect = 5.903e-157
Identity = 229/354 (64.69%), Postives = 284/354 (80.23%), Query Frame = 1 
Query:  331 RKAIRVWCDGCYDMVHFGHANQMRQAKAMGDYLIVGVHTDEEIRQNKGPPVFNQEERYKMVKGIKWVDEVAEGAPYVTSLETLDKHNCDFCVHXXXXXXXXXXXXXYHIVKANGRYKECKRTEGVSTTNLVGRMLLMTKEHFDHGQPISSLDPKALETTRSDSDARSPYTGVSHFLPSSQKIVQFADGQDPKPGDKIVYVAGAFDLFHVGLLDFLEQAKKLGD--YLIVGLHTDDDVNRYKGSNYPIMNLHERVLSVLACKYVNQVIIGAPYKVTKEVIDQFKVNAVAHGTTRITADVDGTDPYEIPKKLNIFHTVESGNPLTTADIVQRIIRHKLEFETRNKKKEIKELAVLD 1386
            R+A+RVWCDGCYDMVH+GH+NQ+RQA+AMGDYLIVGVHTDEEI ++KGPPVF QEERYKMV+ IKWVDEV   APYVT+LETLDK+NCDFCVHG+DIT T DG DTY  VK  GRY+ECKRT+GVSTT+LVGRMLL+TK H    Q +SS   +  ++       R+P+TGVS FL +SQKI+QFA G++P+PG+ ++YVAGAFDLFH+G +DFLE+  +L +  Y+I GLH D +VN YKG NYPIMNLHER LSVLAC+YV++V+IGAPY VT E++  FKV+ V HG T I  D DG+DPY+ PK+  IF  ++SG+ LTT  IVQRII ++LE+E RN+KKE KELA L+
Sbjct:   20 RRAVRVWCDGCYDMVHYGHSNQLRQARAMGDYLIVGVHTDEEIAKHKGPPVFTQEERYKMVQAIKWVDEVVPAAPYVTTLETLDKYNCDFCVHGNDITLTVDGRDTYEEVKQAGRYRECKRTQGVSTTDLVGRMLLVTKAHHS-SQEMSSEYREYADSFGKCPGGRNPWTGVSQFLQTSQKIIQFASGKEPQPGETVIYVAGAFDLFHIGHVDFLEKVHRLAERPYIIAGLHFDQEVNHYKGKNYPIMNLHERTLSVLACRYVSEVVIGAPYAVTAELLSHFKVDLVCHGKTEIIPDRDGSDPYQEPKRRGIFRQIDSGSNLTTDLIVQRIITNRLEYEARNQKKEAKELAFLE 372
The following BLAST results are available for this feature:
BLAST of TCONS_00048214 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PCY25.903e-15764.69Ethanolamine-phosphate cytidylyltransferase OS=Hom... [more]
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