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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048205 ID=TCONS_00048205|Name=TCONS_00048205|organism=Clytia hemisphaerica|type=transcript|length=1927bp
CCGATTGAAGTTTTATCGTTTTCCTCGTTTATTTCTATTATCTTTAAATT
TTAGTATCAATAAAagctttttctttaaatttggtGCATCAAAGAAGGAC
TACGAGAAAAATGTACATGAATAGAACAACTTATACCAACCGTTCGAAAT
GGGGGAATAGCACCCATGGCAACGAAACAACAACAGATGGTATTGATGAT
TTGCTTGCTTTCAACATCAGTGTCGCCGTGcTACTTTGGATCTATAGCAT
CGCTTCGTTTATAAGCTTTCTCTACTGGATGGTGGCGAGAACTGTCCGAA
CAAGAGCAGTATTCACATGTTGTTTGACAGGCTACTTAATTTTCTTAATG
GTGatttgtattgtttttttgGGGCTGTTTTCGTTTTATAAACTATATGA
CAGCGAAATATTAGTCGTTTTATGGATAACCATTTCAGTGTCCACAATAA
TATACTCAAGGAGAATTTTATTGCATAAGCGTTTATTCAAACGATACCAA
CTCTTTTACAATGTTCATTTCAAACGCAATGTTTCATTGGAACAAAAACT
TTTGACAATTGATAAAGATTTTCCAACTCTAGCTGAAttaaataatatca
aatttgaGGCtaaaaaagcaatgaaatggACTGTCAAAGAAATTTCGAAA
GAATTTGAAGATGCTGAATCATTCGACCTTATGTTAACTGGAAGCACACG
CGAAAGACTTAACATACCTTTGACCGTAAACTACAAGGCGAGCCAAGAAG
CGGGTGTTATGACTAATACACATGCTTTATTAACTGATTACGACTTTATG
ATTTGCGATAGAATGAATCAAGCAGATTTCGGTAGAGGGGAAAAGTACGA
AATTAGAAATGAAGATACGCCGCCTGGTTTTGCAAAAATCAATTGCAATA
TGTCAAACACAATTGTTTCACCAAAAGAGATCAAACGCAAGATTTACACG
TTTATCATGAATATGCCAGAAGATCAATTACCTCTTGTCAATGGAGAAAA
ATTATCTGCATGTACGCAAGTATGGAAATTATTGTTTTCTGTATCAAAGG
TTAGTCAAAAAGGACCAGCAATTAGAATAAAAATACACGAAGGTGGTTCA
AGCTTCCTGGTAGATATAACTTTTTCCATCAAAGCTAAAAAATGGCCGAC
AAATTCCGATTGGCTAACAAGAACAAGAAAATGGCCTTGTTCCGATCTTG
TTGAGAAAATTGTACAAGAAGGGTTTCATTTGGTTCCGAAGTCACATCCA
AAAGATAAAAAGGAAACAACTTGGAGATTTTCATTCTCAAAAGCAGAAGT
CACATTACTAAACGAAATCCAACCAACCGCTAGAAAATGTTTCGTTTGTC
tcaaaattattgtcaaagaTTTTCTCATCCCATGCAGCAACGAACTAAGT
ACGTATTATTTTAAAAGCATCTTCATGCATGTGTTAGAAAAAACAGAACC
GAGTTTTTGGCGGGAAGATGATATCGAGGCGTGTTTCTATTGGCTGTTCA
AACACGTGACTGAAGCCgtccaatcaaaacaatgtcCGCATTTCTGGTTG
AATGGAATCAATTTCTTTGAAGAACTGACGGATAGAGATATGAACAAGTT
GTTAAAAATGTTGAACAAAATCAAGCAAAATCCTTCAGCTTATATTGACG
ATTCTTTTGTCAGAgacgataaaaatgaattcAACGAATACTCTCCTCTT
GTACAAAATGTTTGAATTACAATCTGCACAAAATGACTCTCTACTGTATC
AGAAATTATTAAGACTTACTATTATCCAAAAAAGGAATTCAGTTGGTTAT
TGTTAATCACTTTTTTTTACGTACATAATATTTTATTATGATAAAAACTT
TGTCTGACAAAAACATTTCGAGTTTACCGAATCTTTCAAGCCAGTAAACA
CTGTTTCAATTCTgtttctgaattatt Run BLAST on NCBI transcript from alignment at scaffold_141:422526..424773- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048205 ID=TCONS_00048205|Name=TCONS_00048205|organism=Clytia hemisphaerica|type=transcript|length=2248bp|location=Sequence derived from alignment at scaffold_141:422526..424773- (Clytia hemisphaerica)
CCGATTGAAGTTTTATCGTTTTCCTCGTTTATTTCTATTATCTTTAAATT
TTAGTATCAATAAAAGCTTTTTCTTTAAATTTGGTGCATCAAAGAAGGAC
TACGAGAAAAATGTACATGAATAGAACAACTTATACCAACCGTTCGAAAT
GGGGGAATAGCACCCATGGCAACGAAACAACAACAGATGGTATTGATGAT
TTGCTTGCTTTCAACATCAGTGTCGCCGTGGTAAGCTGTGTAATAGTTAT
TCTTATGGGATAAATTTTCGCAGGGACTAAATTTCGAGGTTAAGCTCATC
CGCGAAATTTTAAGAGCTGCAATATTTTCTCTATCAAAAGTACAATCTCA
TAGTGCATTTCGAGGGTATCAAAAACCTACCATTAAGGGCGGCACATACC
GTGGGTCGGACCATATGAGTGCCCCCCCATCCCCCGGGTTCCAGGCTCGT
AATTGTTAAAATTGATCTTAAACCATTAATATTTTTTGACATATTTGAGA
GCCTCCTTTGTTATTAAAAGTGAAAATGTGATTTTCAATTTTTTTTGACA
GCTACTTTGGATCTATAGCATCGCTTCGTTTATAAGCTTTCTCTACTGGA
TGGTGGCGAGAACTGTCCGAACAAGAGCAGTATTCACATGTTGTTTGACA
GGCTACTTAATTTTCTTAATGGTGATTTGTATTGTTTTTTTGGGGCTGTT
TTCGTTTTATAAACTATATGACAGCGAAATATTAGTCGTTTTATGGATAA
CCATTTCAGTGTCCACAATAATATACTCAAGGAGAATTTTATTGCATAAG
CGTTTATTCAAACGATACCAACTCTTTTACAATGTTCATTTCAAACGCAA
TGTTTCATTGGAACAAAAACTTTTGACAATTGATAAAGATTTTCCAACTC
TAGCTGAATTAAATAATATCAAATTTGAGGCTAAAAAAGCAATGAAATGG
ACTGTCAAAGAAATTTCGAAAGAATTTGAAGATGCTGAATCATTCGACCT
TATGTTAACTGGAAGCACACGCGAAAGACTTAACATACCTTTGACCGTAA
ACTACAAGGCGAGCCAAGAAGCGGGTGTTATGACTAATACACATGCTTTA
TTAACTGATTACGACTTTATGATTTGCGATAGAATGAATCAAGCAGATTT
CGGTAGAGGGGAAAAGTACGAAATTAGAAATGAAGATACGCCGCCTGGTT
TTGCAAAAATCAATTGCAATATGTCAAACACAATTGTTTCACCAAAAGAG
ATCAAACGCAAGATTTACACGTTTATCATGAATATGCCAGAAGATCAATT
ACCTCTTGTCAATGGAGAAAAATTATCTGCATGTACGCAAGTATGGAAAT
TATTGTTTTCTGTATCAAAGGTTAGTCAAAAAGGACCAGCAATTAGAATA
AAAATACACGAAGGTGGTTCAAGCTTCCTGGTAGATATAACTTTTTCCAT
CAAAGCTAAAAAATGGCCGACAAATTCCGATTGGCTAACAAGAACAAGAA
AATGGCCTTGTTCCGATCTTGTTGAGAAAATTGTACAAGAAGGGTTTCAT
TTGGTTCCGAAGTCACATCCAAAAGATAAAAAGGAAACAACTTGGAGATT
TTCATTCTCAAAAGCAGAAGTCACATTACTAAACGAAATCCAACCAACCG
CTAGAAAATGTTTCGTTTGTCTCAAAATTATTGTCAAAGATTTTCTCATC
CCATGCAGCAACGAACTAAGTACGTATTATTTTAAAAGCATCTTCATGCA
TGTGTTAGAAAAAACAGAACCGAGTTTTTGGCGGGAAGATGATATCGAGG
CGTGTTTCTATTGGCTGTTCAAACACGTGACTGAAGCCGTCCAATCAAAA
CAATGTCCGCATTTCTGGTTGAATGGAATCAATTTCTTTGAAGAACTGAC
GGATAGAGATATGAACAAGTTGTTAAAAATGTTGAACAAAATCAAGCAAA
ATCCTTCAGCTTATATTGACGATTCTTTTGTCAGAGACGATAAAAATGAA
TTCAACGAATACTCTCCTCTTGTACAAAATGTTTGAATTACAATCTGCAC
AAAATGACTCTCTACTGTATCAGAAATTATTAAGACTTACTATTATCCAA
AAAAGGAATTCAGTTGGTTATTGTTAATCACTTTTTTTTACGTACATAAT
ATTTTATTATGATAAAAACTTTGTCTGACAAAAACATTTCGAGTTTACCG
AATCTTTCAAGCCAGTAAACACTGTTTCAATTCTGTTTCTGAATTATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048205-exon-scaffold_141-1575043694:424544..424773 | TCONS_00048205-exon-scaffold_141-1575043694:424544..424773 | Clytia hemisphaerica | exon |
| TCONS_00048205-exon-scaffold_141-1575043694:422526..424222 | TCONS_00048205-exon-scaffold_141-1575043694:422526..424222 | Clytia hemisphaerica | exon |
| TCONS_00048205-exon-scaffold_141-1510915933:424544..424773 | TCONS_00048205-exon-scaffold_141-1510915933:424544..424773 | Clytia hemisphaerica | exon |
| TCONS_00048205-exon-scaffold_141-1510915933:422526..424222 | TCONS_00048205-exon-scaffold_141-1510915933:422526..424222 | Clytia hemisphaerica | exon |
| TCONS_00048205-exon-scaffold_141-1491911889:424544..424773 | TCONS_00048205-exon-scaffold_141-1491911889:424544..424773 | Clytia hemisphaerica | exon |
| TCONS_00048205-exon-scaffold_141-1491911889:422526..424222 | TCONS_00048205-exon-scaffold_141-1491911889:422526..424222 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_141 | supercontig | scaffold_141:422526..424773 - |
Blast
BLAST of TCONS_00048205 vs. Swiss-Prot (Human)
Match: M21D2 (Protein MB21D2 OS=Homo sapiens GN=MB21D2 PE=1 SV=3) HSP 1 Score: 84.7297 bits (208), Expect = 4.037e-17 Identity = 55/205 (26.83%), Postives = 100/205 (48.78%), Query Frame = 3
Query: 1041 VSKVSQKGPAIRIKIHEGGSSFLVDITFSIKAKKWPTNS-DWLTRTRKWPCSDLVEKIVQEGFHLVPKSHPKDKKETTWRFSFSKAEVTLLNEIQPTARKCF-VCLKIIVKDFLIPCSNELSTYYFKSIFMHVLEKTEPSFWREDDIEACFYW-LFKHVTEAVQSKQCPHFWLNGINFFEELTDRDXXXXXXXXXXIKQNPSAYI 1646
V KV + G I I + G S L DI + K WP + WL W + E+ V GF+LVP K KK+ WR SF+++EV L I + + + C II+K L+ +S Y+ +S+ + ++ ++ ++D A F L + + +K CP++++ N E L++ + + L+ ++ +P+ ++
Sbjct: 210 VEKVEKNGTIISIILGVGSSRMLYDIVPVVSFKGWPAVAQSWLMENHFWD-GKITEEEVISGFYLVPACSYKGKKDNEWRLSFARSEVQLKKCISSSLMQAYQACKAIIIK--LLSRPKAISPYHLRSMMLWACDRLPANYLAQEDYAAHFLLGLIDDLQHCLVNKMCPNYFIPQCNMLEHLSEETVMLHARKLSSVRSDPAEHL 411
The following BLAST results are available for this feature:
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