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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048190 ID=TCONS_00048190|Name=TCONS_00048190|organism=Clytia hemisphaerica|type=transcript|length=165bp
TCTCTGAGCTCATTTTGCCACGTACATCCATCAACGAAATTCGGACATCG
AATTTTCAAACTGagtatttctcttttttttcccacATCAGGAAAAACTT
GAATCTCTTGCCAATCTTTGGGGCATTTTCCCGGACTAGAATAAAATGTT
TAACATAAAAAATTC Run BLAST on NCBI transcript from alignment at scaffold_141:188606..199661- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048190 ID=TCONS_00048190|Name=TCONS_00048190|organism=Clytia hemisphaerica|type=transcript|length=11056bp|location=Sequence derived from alignment at scaffold_141:188606..199661- (Clytia hemisphaerica)
TCTCTGAGCTCATTTTGCCACGTACATCCATCAACGAAATTCGGACATCG
AATTTTCAAACTGAGTATTTCTCTTTTTTTTCCCACATCTGGAAAAACTT
GAATCTCTTGCCAATCTTTGGGGCATTTCCCCGGACTAGAATAAAATGAT
TAACATAAAAGATTCTCCAATGCAATTAATTTGAGTAGTAGATTCTTTGC
TTAACGAAAACTTTTTATAGAACACAAGAAAATGACGACCAACAAAAATA
TAGAAAATTTCGACGTGAACTTACTACTGTTCACACTTACTTCTGAAGAT
GAAATTCCCCAATACATTTTTCACAAAATCGATGCCCACATTTCACGGCT
TGTACTGGTTCTCGCAAAACCAAAAGACATATTGCACAAGTGATATCGTC
TCTATTGATTTCTTTGGCGTTCTGTACAGAATCTTCTTCTGTTGTTTCAG
ATACTTCAGATTTTTCGTCTTCCCAGATGAACGTCACATCAAAACCATAC
TCTTCTGGTTTACAAGCTGCCATATTATTTAAAAATCTAATTTTCAGCGA
TCAAGATCGAACTTTTCACAAATAATTAAAGGATCAGATTAAAAAGAAAT
TTCCGTTTCTCTTCCCTCTCCGAAACTATAGCTTGCTACAGTAAGCTCAT
ATCTCGATACTATCACTTTCAAAATACCTCTTGAACAAAAAAATCTATCA
AAAAACAGAATATAGACAAATCAATGGCCTTGAAATTTAAAGACACAGCA
TTCCTTAGAAAAATGAAACTACTTAGGTAAGAGTGATAGTTCCTTTATAA
TAACACTGTAGAACCTTTCGCCCTAAAAACACACGTTTTTCTCAAGAATC
ACCCTATAATACGCTATCACTTAGATCAGCAATTTGAGCATAAAATCGAA
AAATCAGGAAGGTTATTCATTTTTTGCGAATTGTTGATTCATTGTTCTTA
GTAACAGTTTCAAGAAATTATTCAAATTTTCATATAAGCATTAATGATTG
CATTCCATATTCATTCACTTTACTTAATTTATTCATAGAATTATTAATTA
ATTATCTACGAAATAATTTTAGAATTTATTAAATATTGTCTAATCTTCAT
CTGTCGTCCAGTCGTCAGAAGATATGGACAGACTAGACGTTGTTTTGGTA
TTTGTTCGAGGTTATCGAACTAAATTTGAAAATTTTCCAACGCCCCCGTA
TTTCTAATCTTTATAAACTCTTCATACATTTACTCTAAAAAGACGACGAA
AACGTAATATATAACGACATTTACACCAATTAATGACTAGAAGATTAATT
CATTTCAAATCTTATTGTAACACTATCATTCATAGTTATGTCCTTGAATA
AGCCGTGCTCAAATGCTGACGGATTTCCAAGCCGGTAAGCACATACATTA
CATGGTCTTTTAAATGAATCTTTCCATCTACCTCCTTCATCTGTACTTCT
TCTCACAGTTTGAGCAATTTCAACTCCATTAAATATCAAAGTGAAAATCA
ATGATTTCCAAGGCATTGGCCATTCTAGAGTATCGTCATGAGGTCCCACC
TCATTATTAAAGAAAACTGACACATAAGTGTATATGTTGTCTTGATTGGT
CTCGCGAAACATGGAGGAAATACATCCTTTATAACCATGCTTAGCAAAAA
AACTTGCTGAACTATATGTCCTATATGTCCATTTCGTACCAGCGTCAATT
TTCTTTTCGAAATTTTCGATAGTCCATATATAGTTAAATAGTGATGGTGC
GCAGATATCCAAATTTAATTCATCTTTTTGATGCTGTTGTTTGACTTTTT
CAACCTCCTGCTTAGTCAGCATAAATTCTTCTTTCAAATCAAAAAGAGAT
CTATCGGTTGTCTTCAACTTCGTCAGCAATTTTTTCTCCAACGATTTGAT
GGCAGTGCTGCCATTGCCAACATTTTATTTATTTATGATTTTGGGTAATT
AATTAGAAGATTAAGTGCGTGAAATTTGAATAGTTTTACCGAAAATATTT
TACCGTTAAAACCTCAATTTTTTAGACAATAAGTTCTATGATGGTAGTNG
AAAATATTACAAAATTTGGCTAAATCGCAAAAATATTTTACCGTTAAAAC
CTCAATTTTTTAGACAATAAGTTCTATGATGGTAGTTTGAACTTCTTTGT
TCAAATAAAAAAAGGAGAGCACTCGTCGCAGTCGTTATTAAGTTCTTATA
AAGGGATTTGAACTTCTTGCAACTCTTCATCTTTTCAATTTTTCTTTGGC
GACTTGTAATTTCTCCGCCAATACTTGAATCGTTNCCTTTTCAATTTTTC
TTCGGCGACTTGTAATTTCTCCGCCAATACTTGAATCGTTTTGTCTTTAA
CTTGAATCGTTCTGTTTTTAGCTTGAATCGTAATTTCATGTGCTTGAATT
GTTCGGTTTTTAGCTTGAATCGTAATTTCTTGTGCTTGAATCGTTATGTC
TTTAGCTTGAATCGTATTTTCATATGCTTGAATCGTATCGTCTTGAGCTT
GATTCGTTTTGTTTTTAGATCGAATCTTATGTTCATGTGCTTGAATCGTA
TCGTCTTTAACTTGAATCGTTCTGTTTTTAGCTTCAATCCTAATTTCATG
TGCTTGAATTGTTCTGTTTTTAGCTTGAATCGTATCGTTTTTAGCTTGAA
TGGTATTTTCATGTGCTTGAATGATTTTGTCATAAGCTTTAATAATTTGG
TCTTTTGTTTTCAAGACCTGACCAAGTTCGGATTTCCCGATTTCGTTATC
CCTTTCTTTCAACTGTTCAACGAATTCATTTTTCATTTGTTGAATTTCGA
GATCTTTCGCTGTCAACTTTTGATCGAATTCTTTTTTCATTTTGAAAATC
TCACGTTTCATTTCAAGAGACAAATGCATGTTGGCCGATTGTGCCATATG
ATTGTCCAGTTGTAATTTGGTGCCCTGAAACCAATCAATTTAAAGAATCT
TAGCTTTTTAAATAATATAACAGTTTTTTAACCTCTATACTTTACCGNAC
AATTCAAAGAATTTTAGCTTTTCAAATAATATATCGGCTTTTTTTACCTC
CATACTTTACCGTACTTACTAAAAACAATCCAAACGTTCCCTTAACACTC
AAACGCGCCAAAATGACAAAAATCCGGATAGTGCTGTGGTACAGCTACTT
TAAAAAAGAAACTTTTGCGGAACTCTTGTAAAATTTCCCACACTTAGCGA
AAAACTCTGAACACCTTATATGGTTTAAATTTCGCATGCGTCAATTTTTG
GGATTTTTGTAGTCTAGTATACTAAACGACTAATTGAGACAGACAGAAAT
TAATAAGAGGAATAAATTGCATACAAACTAATATTATCCCGGAACAACTA
TCATGTTATCATATTTTCATATAACACTAGTATTACTGTAATAAACGGAC
TATGACTCCGGTCTACGATTTTCGCATAGTTTGACCCTCTTCGCAAAATT
TATCTTCGATAATCTTCGATTCGCAAAAAAAAGTTCACGCTGATTGTAAT
TTTTTTCATTCTTTGGAAATTAAAATAGCAGCTTCAACATAAGAAAAATT
TACCTTAAAGTAGCATCCAGAGTCGTTGTATTCACAAGGGGAGACCATTG
GGCATACGGTATCCACGTGATTCGTTATCTAAATAAGAATCAGTAAACTA
AAAAGATATGTAATCAACTGTAGAATTATACGATGGACTTTTAGACATTT
GTTTAGCATCGCTCACATCAATACACAGTCCATGGTATCCACGTTCGATG
AATTTGTGCTCTTTGTTAATAAATACAAATTCGATGCGGTAACACTCACC
GAAACCTGGCTAAAAGACAATCCTTTCTTGCTTGATTATGTTAAAATTGA
AGGTTACAAACTTTACTATCATAACCGAGACAACAGGCGTGGTGGCGGTG
TCGGCATATACATCAAAGATGACATCAAGCTCAAAATACGCAAAGATATC
ACCAACATCAACCCAGCCCTCGAACATCTATGGGTTGAAATTGAAGGAAA
AAACAAACATTCTAAACTACTCCTCAATGTTGCGTATCNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTACACCAAAGCTCCTTATT
GATATGTGAAAGCTACCAAAAATAGCAATGTCCTCCATCAGAACAACTTT
AACATAAGGGACAAGGACAGTCAAGAAGTCTACTTAGTTGAACAAAATAC
TTAGAGAAAATGGTACTATGGAAGCCCATTCTATACTCCTAAATGATAGT
TGAAAGATCAGCAGTTGAGAGGGTTGATTAAAATAGAAATCAAAGCACAC
AATAAAGTATACATATTTGTCCAGAAAGAACTGGCATGTTGTTTGGCATG
TTTGCTTTGTTTTGGTATTTAAAAATATGTACTTATCAGTCCTAAAAAAA
TACAAATTTGAATATAATGAGGGCAATGAGTCTGGTTAAATGTTACTAAA
TTTACAAGAAAGGATTACTGAAAAAATACTACTGTAGATGAACTAAACTC
AAAAACTAAAATTTTACCATAAATTTACACTACGACAATTTAAAAATCTA
TCTTTAATAGCAGCAAAGAAAAAATCATGGCTCAAAGTTTTAAAAACAGA
GCTAGTCAGAGCTTCAATTCAGTAGGTAAAGAGCTTTCAAAATTTGAAAA
CAGACACTGCATTGGTTTACAAGACTAGAGAAAGATGTCAACCATCCACA
TGGTTTTTTCGAATCATGAAAAAAATAAAGTATTTATCAAAAAAAGGTTC
TCTTTTCTTTTTTTTGGTAATCAATTCCAACAAACAACAATCAATATAAC
ATTTTTTTGGAAACCATCCCACAGTGTAAACATTATCAACCAACTAAACC
CACACCGCCAAAATTGTAAAAATAAGTCAATATAATTTCTATCAACAATT
TCTCGTAAAATGTTTTTTTCCAACATTCTGATACCAATCATGGCTGGAGG
CATCATGTGTAGAGTGACTGTGTGGCATTTCATTGCTTTAATGATCATGA
TACCAAACATCAACCAAACAAAACTGACGCCAAGCCAAATCTGTCGATTA
ACAATTTCCATGAATAATGATGAAAATTATAATTGAAACTTATCTCGTAA
AATGCTTTTTTCAACATTCTGGAGGTGTTCAAAGTTAGAGGTATCATATG
TAGAGCCAAGCAATACATGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTCACTCA
CTTTCAAAATTTTTCCTATTTCAAGCCAATATATTGTAGATTCTATGATC
ATGAGGTCTAGTGGTTATATTATTAATATTTACCTTAAAATATTTACTTG
ATATTTTAGTCTGGTGGTCTGATCAACACTGAAATTTTCGCAGGATTAGC
TACTTCAATACTATTACAACTCAACCGAACTTTTCCTAATCAGCCACTAC
AACACCAACAAGTTATACTTTCTGTTTTCTTTTTCTGCAATTTTGCGAGC
TCTGCCAGTATCCTTGAGTTCTGTTTTGTGTTTTGTTTCTACAGTTTTAC
GGTTTCGCGAAATAATAAATTATCCCCGTTTTTACTATCCTTGAGTTGTT
TTTTTTTGTGTGTTTTGTTTCTACAGTTTTACGGTTTCGCGAAATAATAA
ATTATCCCCGTTTTTACTATCCTTGAGTTGTTTTTTTTTGTGTGTTTTGT
TTCTACAGTTTTACGGTTTCGCGAAATAATAAATTATCCCCGTTTTTACT
ATCCTTGAGTTGTTTTTTTTTGTGTGTTTTGTTTCTACAGCATATTTTTT
TTCATAGAATATAATTATCTTTTTATTTAAATATGATTATTTTTACATAG
GACGAATAGCCATTGTAAAATATGGAAGAGCCTGAAAGACAATTAATAAA
TAAAAAATAAAAAAAATAAATAATCCAAAAAATCTCATCCTTGAAATACT
AAGTTATTTCCAACATTACTGAAGCAAATGTTCAATTTGCGTAAGGACTC
GCCTTTACAGATTCGCACTACATTCCTCCCCCCTCCCTCAGTTAGATATT
TTGAGTTTTTCAGCCACGGGTCTTTCGGGCATCTTAAAAATCCGAGTCAA
GTAACTCGAAAAAAAAATCTTACACCAAAAAAAAACAAGTTAAAAGATTC
CAAAATATAAATTTCATAACTCGATATACACCTCTAAAATACGAAAAATT
TAGGGGCGCCTTAGAAATAAAAGTTTGCTAACTAGAAAAATTAAGGTTCG
TCATAATCAACAGAGTTAATCAACTCGAACGATTAAGGTAACCACGAAAA
AATCGAATTATCATTAATTCATTATCTTCTAAAATGACGTCATATCTCTC
AAGTTATGACGTCACAAATAGGTAATTAGGGTTTGCCGAACTCGGGTTTT
TCTAACGGGCATTGAGGGCCTTACAGAAAGTTATCCCGAAAATTTTCATG
GTTTGTATTCATATATATCAAGGCCAAAAAAACCCGAGTTACGACGTCAT
AACTTTAAGGTTTTTTAAGGTCCTTTAACTCGTGTTTTCCAGGCCTCTCA
CATATCTTACAAATGATAACAAATCGTTCTTACGTTTTTACGGAGGACGA
ATTCTCCACAATCTAATTCACAAGGAACGGTCACAAAACCGCAAGTTTTC
AGGTGAACCTAAAACAATGATAAAGGATTGTTATTATTTATTGCAAAATA
AAATCAACTCCTTAAATTAGAAAATTGGCCAAAAGCTTAAGTACGGAAGG
GGGTTGCTACCTCAAATATAGATCAATCTCCTCTACCTCTAGGCTCTTCC
CCTTTTTATAATCTTATTATAAATCAAAGTCATTATAAATATCATCAAGT
AATTCCTCCCCCTTTCCTCCAAGGTGATATGGTTTCACCATAGTATAAGA
AAGCCGCGGCTGGAATGAGTACAGCTGAATTTCTGTTGTTCTATCTATGT
CGTAAGAACAAATTTTTTTATGGTTCGGTGANNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTATAAACCACAGAGACACAGATAGAACATCTATTTACAACAAA
AACAATAGCGTCATCATTCCAGCCGCGGCTTTCTTATACTATGGTTTCAC
TACATAAATTGTTCCTAATGAGAGCATAACTTAAACTATCCATTTTGGTA
AAAATTTGCGTAAAGTAGAGGGTCTGTAGGAATTAACACAATGTCAGATC
ACAAAACTAGAAATTTAGAAAGAAAGATTCAAAGTACTTTACTGTCGTTT
TTGACCATTTTTCTAGAACAGCCATTTTTGAAAACTTCTTTTCGCTGCGT
ACAGATGATATCAAATGAAATAATGCCTACAAACCTCTTCCTCTCTGAGC
TCATTTTGCCACGTACATCCATCAACAAAATTCGCACATCGAATCTTCAA
ACTGAGTATTTCTCTTTTTTTTCCTACATCAGGAAAAACTTGAATCTCTT
GCCAATCTTTGGGGCATTTTCCCGGACTAGAATAAAATGTTTAACATAAA
AAATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048190-exon-scaffold_141-1575043694:199576..199661 | TCONS_00048190-exon-scaffold_141-1575043694:199576..199661 | Clytia hemisphaerica | exon |
| TCONS_00048190-exon-scaffold_141-1575043694:188606..188684 | TCONS_00048190-exon-scaffold_141-1575043694:188606..188684 | Clytia hemisphaerica | exon |
| TCONS_00048190-exon-scaffold_141-1510915933:199576..199661 | TCONS_00048190-exon-scaffold_141-1510915933:199576..199661 | Clytia hemisphaerica | exon |
| TCONS_00048190-exon-scaffold_141-1510915933:188606..188684 | TCONS_00048190-exon-scaffold_141-1510915933:188606..188684 | Clytia hemisphaerica | exon |
| TCONS_00048190-exon-scaffold_141-1491911889:199576..199661 | TCONS_00048190-exon-scaffold_141-1491911889:199576..199661 | Clytia hemisphaerica | exon |
| TCONS_00048190-exon-scaffold_141-1491911889:188606..188684 | TCONS_00048190-exon-scaffold_141-1491911889:188606..188684 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_141 | supercontig | scaffold_141:188606..199661 - |
Blast
The following BLAST results are available for this feature:
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