TCONS_00048186 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048186
Unique NameTCONS_00048186
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length948

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048186 ID=TCONS_00048186|Name=TCONS_00048186|organism=Clytia hemisphaerica|type=transcript|length=948bp
CAAGGATACTACCAGACGAAAACAACGTAATAGACACCGAAGGAAAGAGG
ACATCAAAACTGTATTAATTTCGCAAAACCTGGACATAAAATCTTGACTG
AGGAACAAGCGAAAAAAGAAGGACTCTTCTAATGCGAAAATACTAATGAT
CCCCACCTTTACAATATTCAAAACATATGGCATGACAAAGGCATTACGAC
TAATAATCATCGTCATAAAAATCACCCTTGCTCCAAGAATAACCATCGCT
ATTCTTGGAATATGGGTGATAATTATTACGGCGATTATTAGCACGCTCAA
AATTGTCACTCGGCCGATTATAACCACTGGAGGCAGTACTGGAACTTCTT
GACTCTTCGCTCTGGAAGGAGTCAAGATTCCCAGTACTCTTCCACTGTTT
AAAATTGGCCGAGTTGATCTCTTTTGAGGGAATACGTTTGTCATGACATG
TGCTTTTGAAATTGCGAAAGGTAGGGATATTACCTTTTAATTTCCACAAT
TCGGCAACTTTCGGCTTTAGTTTTTCAATATCTTCTTTCATCTTCTTGTT
CTCCTCTCGTAATCTCTTTATTTCAGATTCGAATTCTTCTTGTTTCACTT
GTTCGTCAGTCAAGATTTTATGTCCAGGCTTGCTAAGGTACAGTTTTGAT
GGCCATCCTTCCTTCGGCATCCATATGTTATTGTCTTCGTCTGGTAGCAG
GACCGACTAAACCCCTTCATCCGTTAGATACGTTAGGTACATGGCGCTTT
CGTCCAACGTTTTTATCTCCCGCAACGGTATCGCTGGTCTCTCCCGTTTG
GATTTcgacttctttctttcttttaagtGAGCCTTTAAGGTCACAACGAC
CAAGTTGAACAAAACGATTGTTACGAAAGACATGATGACTGTGAGTTTAG
TGTctggaaatggaaaaaaatatcattagCGAAGTGCCTAAAATAAAC
Run BLAST on NCBI

transcript from alignment at scaffold_141:122460..123539-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048186 ID=TCONS_00048186|Name=TCONS_00048186|organism=Clytia hemisphaerica|type=transcript|length=1080bp|location=Sequence derived from alignment at scaffold_141:122460..123539- (Clytia hemisphaerica)
CAAGGATACTACCAGACGAAAACAACGTAATAGACACCGAAGGAAAGAGG
ACATCAAAACTGTATTAATTTCGCAAAACCTGGACATAAAATCTTGACTG
AGGAACAAGCGAAAAAAGAAGGACTCTTCTAATGCGAAAATACTAATGAT
CCCCACCTTTACAATATTCAAAACATATGGCATGACAAAGGCATTACGAC
TAATAATCATCGTCATAAAAATCACCCTTGCTCCAAGAATAACCATCGCT
ATTCTTGGAATATGGGTGATAATTATTACGGCGATTATTAGCACGCTCAA
AATTGTCACTCGGCCGATTATAACCACTGGAGGCAGTACTGGAACTTCTT
GACTCTTCGCTCTGGAAGGAGTCAAGATTCCCAGTACTCTTCCACTGTTT
AAAATTGGCCGAGTTGATCTCTTTTGAGGGAATACGTTTGTCATGACATG
TGCTTTTGAAATTGCGAAAGGTAGGGATATTACCTTTTAATTTCCACAAT
TCGGCAACTTTCGGCTTTAGTTTTTCAATATCTTCTTTCATCTTCTTGTT
CTCCTCTCGTAATCTCTTTATTTCAGATTCGAATTCTTCTTGTTTCACTT
GTTCGTCAGTCAAGATTTTATGTCCAGGCTTGCTAATGTACAGTTTTGAT
GGCCATCCTTCCTTCGGCATCCATATGTTATTGTCTTCGTCTGGTAGCAG
GACCGACTGNTCGAATTCTTCTTGTTTCACTTGTTCCTCAGTCAAGACTT
TATGTCCAGGCTTGCTAAGGTACAGTTTTGATGGCCATCCTTCCTTCGGC
ATCCATATGTTATTGTCTTCGTCTGGTAGCAGGACCGACTAAACCCCTTC
ATCCGTTAGATACGTTAGGTACATGGCGCTTTCGTCCAACGTTTTTATCT
CCCGCAACGGTATCGCTGGTCTCTCCCGTTTGGATTTCGACTTCTTTCTT
TCTTTTAAGTGAGCCTTTAAGGTCACAACGACCAAGTTGAACAAAACGAT
TGTTACGAAAGACATGATGACTGTGAGTTTAGTGTCTGGAAATGGAAAAA
AATATCATTAGCGAAGTGCCTAAAATAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030668XLOC_030668Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048186-exon-scaffold_141-1575043694:122913..123539TCONS_00048186-exon-scaffold_141-1575043694:122913..123539Clytia hemisphaericaexon
TCONS_00048186-exon-scaffold_141-1575043694:122460..122780TCONS_00048186-exon-scaffold_141-1575043694:122460..122780Clytia hemisphaericaexon
TCONS_00048186-exon-scaffold_141-1510915933:122913..123539TCONS_00048186-exon-scaffold_141-1510915933:122913..123539Clytia hemisphaericaexon
TCONS_00048186-exon-scaffold_141-1510915933:122460..122780TCONS_00048186-exon-scaffold_141-1510915933:122460..122780Clytia hemisphaericaexon
TCONS_00048186-exon-scaffold_141-1491911889:122913..123539TCONS_00048186-exon-scaffold_141-1491911889:122913..123539Clytia hemisphaericaexon
TCONS_00048186-exon-scaffold_141-1491911889:122460..122780TCONS_00048186-exon-scaffold_141-1491911889:122460..122780Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_141supercontigscaffold_141:122460..123539 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.113647	0.159539	0	0.104072	0.0617216	0.117254	0	0	0	0.127892	0	0.0371554	0	0.03111	0	0	0.0551027	0	0.00157756	0	0	0.156419	0.0890758	0.143428	0	0	0.0650644	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048186 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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