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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048178 ID=TCONS_00048178|Name=TCONS_00048178|organism=Clytia hemisphaerica|type=transcript|length=707bp
GTTTAATTATTTCTATGAAAATTAGAAAACTATTTACAGAACTTTTAAGC
TGAATGATAATTCTAGGGAAAAGCTTTTATAAAGATTTATTTACAGTATT
TTCTATGTACAAATCCAAAAATATAACATTTGGTGTAAAAACCTCTGTAG
AAGAGGGACTTATATCAATAGTTTACACATATGATGGTAAGCAAAGAAGA
GTGTATACTTTAAGGCGAATGGTCTTTAGGTATGTGTAGCATGTATGGTC
AAGTGTTCTAAAGAATTGATCATTTTCctttataaagttttgtttCATGA
TTCTTATGAGTGACATAGCCTAAATTACTGGCTTTAGGGATTGGTTCTTG
TTTTGGTAGGCTATAGTTAATATCATGCCTCACTATAGTTGATTGGCATC
CGTAATAATGAATTCCACTGTTTAAAGGGGAACCGTAACTGCCACTTGAT
GAGGTGGAAATGGAGCTGCTTGAACCTCCAGTATTGATACCAATTGGTTT
AGATTTGGTTTTGGAATTACTGCTGCTGTTGTTGCTGTTAAGACCTTTGC
TCATCAACGAATTTCCTCTACCAGACATGTTGAAGTTTCTAAGTTAAAGC
GTACAATAGTAGAACTCAAAAGTGTTTTTACAAGAGATTTCTTTTCACAT
CTGTGTGATATCAAAGTGCTATCGGTTCCATGTGATATGTCAGCTCTtga
atttatt Run BLAST on NCBI transcript from alignment at scaffold_141:480643..481670+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048178 ID=TCONS_00048178|Name=TCONS_00048178|organism=Clytia hemisphaerica|type=transcript|length=1028bp|location=Sequence derived from alignment at scaffold_141:480643..481670+ (Clytia hemisphaerica)
GTTTAATTATTTCTATGAAAATTAGAAAACTATTTACAGAACTTTTAAGC
TGAATGATAATTCTAGGGAAAAGCTTTTATAAAGATTTATTTACAGTATT
TTCTATGTACAAATCCAAAAATATAACATTTGGTGTAAAAACCTCTGTAG
AAGAGGGACTTATATCAATAGTTTACACATATGATGGTAAGCAAAGAAGA
GTGTATACTTTAAGGCGAATGGTCTTTAGGTATGTGTAGCATGTATGGTC
AAGTGTTCTAAAGAATTGATCATTTTCctttataaagttttgtttCATGA
TTCTTATGAGTGACATAGCCTAAATTACTGGCTTTAGGGATTGGTTCTTG
TTTTGGTAGGCTATAGTTAATATCATGCCTCACTATAGTTGATTGGCATC
CGTAATAATGAATTCCACTGTTTAAAGGGGAACCGTAACTGCCACTTGAT
GAGGTGGAAATGGAGCTGCTTGAACCTCCAGTATTGATACCAATTGGTTT
AGATTTGGTTTTGGAATTACTGCTGCTGTTGTTGCTGTTAAGACCTTTGC
TCATCAACGAATTTCCTCTACCAGACATGTTGAAGTTTCTGTGAAGTAAA
ACAAACAGTTTTCATAAATTTGATAACCATAACAAAAGTTTAGattgaga
aagaaagaaaaagtaaaagggATATATATGGTCTGAATTACAAAGGGTCA
TGCTGAAAAGGTTGCATCACAGATAtctaaatacacccctgtctcacaaa
tCTTTGGTGTGTGATTTCAGGATGTCGTTTTCACCAGGGAAGATTTTTCG
CCCTCTTTCAAGGGGTAAAGAGAACCCGTGGGGTAGTGGATTTGTAAGAC
AAGAATTCCAGCTTTGCAGGGTTTTTCAGTTGTAAAATAATTATGCTTAC
CTAAATTTAAGAAGTTAAAGCGTACAATAGTAGAACTCAAAAGTGTTTTT
ACAAGAGATTTCTTTTCACATCTGTGTGATATCAAAGTGCTATCGGTTCC
ATGTGATATGTCAGCTCTtgaatttatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048178-exon-scaffold_141-1491911889:480643..481232 | TCONS_00048178-exon-scaffold_141-1491911889:480643..481232 | Clytia hemisphaerica | exon |
| TCONS_00048178-exon-scaffold_141-1510915933:480643..481232 | TCONS_00048178-exon-scaffold_141-1510915933:480643..481232 | Clytia hemisphaerica | exon |
| TCONS_00048178-exon-scaffold_141-1575043694:480643..481232 | TCONS_00048178-exon-scaffold_141-1575043694:480643..481232 | Clytia hemisphaerica | exon |
| TCONS_00048178-exon-scaffold_141-1491911889:481554..481670 | TCONS_00048178-exon-scaffold_141-1491911889:481554..481670 | Clytia hemisphaerica | exon |
| TCONS_00048178-exon-scaffold_141-1510915933:481554..481670 | TCONS_00048178-exon-scaffold_141-1510915933:481554..481670 | Clytia hemisphaerica | exon |
| TCONS_00048178-exon-scaffold_141-1575043694:481554..481670 | TCONS_00048178-exon-scaffold_141-1575043694:481554..481670 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_141 | supercontig | scaffold_141:480643..481670 + |
Blast
The following BLAST results are available for this feature:
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