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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048160 ID=TCONS_00048160|Name=TCONS_00048160|organism=Clytia hemisphaerica|type=transcript|length=1362bp
CAAATCATGTGGATACCGTATGTCCAATGGTCTCCTCTTGTGAATACAAA
GACTCAGGATGTTACTTTAAGGGCACAAAGTTACAACTGGATAATCATAT
GGCACAATCGGCCAACATGCATTTGTCTCTTGAAATGAAAAGtgagattt
tcaaaatgaaaaaagaattcgATCAAAAGTTAACAGCAAAAGGTCTTGAA
GctcaacaaatgaaaaatgaatttgctGAACAGTTGAAAATGAGGGACAA
CGAAATCGGAAAAGTCCGGTTGGATCTTGATGGAGACTTGAAAGCAAAAG
ACAAAATGATTCAAGGATTAGCGGAGCGGTTAAAAATTGCAGAAGAGAAA
TTGAAAGGGGTCGGCGAAATAGAAATCAAAGTTCAGATGAACCAAACCGC
CATCAAGTCcttggagaaaaaattgttgACGAAGTTGAAGACAACCGATA
AAtctctttttgatttgaaagaagAATTTATGCTGACTAAGCAGGAAgtt
gaaaaagtcaaagaacAGCATCAAAAAGACGACCTTTTTAAAGCATCGGG
TAGAGGTTTAGCTGTAAAAGGGGAATTAAATTTGGCTATCTGCGCACCAT
CACTATGTAACTATACATGGACTATCGAAAATTTCAAAGAGAAATTTGAC
GCTGCTACGGAATGGAGAGAGTATAATTCACCAAGTTTTTTTACTAAGCA
TGGTTATAAAGGATGTATTTCCTCTGGGTTTCGCCAGaccaataaagaca
aaaaaaaccCTTGTCTATCAGTTTACTTTCAGAACAGAGTGAGTCCTTAT
GACGTTACTTTAGAATGGCCAATGCCTTGGAAATCATTGATTTTCACTTT
AATCTTTAATGGAGTTGAAATTGCCCAAACTGTGAGAAGAAGTACAGATG
CAGGAGGTAAATGGAAAGATTCATTTAAAAGACCAGCTTTTACATGTTTC
TGTGTGGGTAATCGGTCAGCCTTTGAGCACGGCTTATTCAAGAACATAAC
TATGTATGATAGTGTTGCAATAAGATTTGAAATGAATTGATCTTATACTC
AGTAAATGGTGTAAACTACATTTGAAACAAACTATCCATTTCCAAGAAAT
TGTATTTATGGGTGGAGCCTCGTGTCAGTCAATCGAATTATTTATCGTAT
TTAATCAACTTTTCAATTCAAGACCTCCATTTAGACCAGAATGATCGATG
GTAATTACTTTACCTTAAATTGACTTAACCTTTGGATATTTTGGACGTAT
TGCACTTTCGtcgtctttttagagtaaaTGTATGAAGAGTTTATAAAAAT
TACtaaattcaaaaatcatttcgtaGATAACTAATAATTCTCGGGTACgt
aatagccggggg Run BLAST on NCBI transcript from alignment at scaffold_141:201417..202993+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048160 ID=TCONS_00048160|Name=TCONS_00048160|organism=Clytia hemisphaerica|type=transcript|length=1577bp|location=Sequence derived from alignment at scaffold_141:201417..202993+ (Clytia hemisphaerica)
CAAATCATGTGGATACCGTATGTCCAATGGTCTCCTCTTGTGAATACAAA
GACTCAGGATGTTACTTTAAGGTAAATTTTTCTTATGTTGAAGCTGAAGT
GCTAgctttattttgtcttttttcaaaGTAGCTGTACCGCAGCACTATCC
GAATTTTTGTCATCTTGGCGCGTTTGAGGCTTAAGGAACGTTTGGATTGT
TTAAAGTAAGTACGGTAAAGTATAGAGGttaaaaaaactgttatattatT
TGAAAAGCTAAGAGTCTCTAAATTGTTTGGTTTCAGGGCACAAAGTTACA
ACTGGATAATCATATGGCACAATCGGCCAACATGCATTTGTCTCTTGAAA
TGAAAAGtgagattttcaaaatgaaaaaagaattcgATCAAAAGTTAACA
GCAAAAGGTCTTGAAGctcaacaaatgaaaaatgaatttgctGAACAGTT
GAAAATGAGGGACAACGAAATCGGAAAAGTCCGGTTGGATCTTGATGGAG
ACTTGAAAGCAAAAGACAAAATGATTCAAGGATTAGCGGAGCGGTTAAAA
ATTGCAGAAGAGAAATTGAAAGGGGTCGGCGAAATAGAAATCAAAGTTCA
GATGAACCAAACCGCCATCAAGTCcttggagaaaaaattgttgACGAAGT
TGAAGACAACCGATAAAtctctttttgatttgaaagaagAATTTATGCTG
ACTAAGCAGGAAgttgaaaaagtcaaagaacAGCATCAAAAAGACGACCT
TTTTAAAGCATCGGGTAGAGGTTTAGCTGTAAAAGGGGAATTAAATTTGG
CTATCTGCGCACCATCACTATGTAACTATACATGGACTATCGAAAATTTC
AAAGAGAAATTTGACGCTGCTACGGAATGGAGAGAGTATAATTCACCAAG
TTTTTTTACTAAGCATGGTTATAAAGGATGTATTTCCTCTGGGTTTCGCC
AGaccaataaagacaaaaaaaaccCTTGTCTATCAGTTTACTTTCAGAAC
AGAGTGAGTCCTTATGACGTTACTTTAGAATGGCCAATGCCTTGGAAATC
ATTGATTTTCACTTTAATCTTTAATGGAGTTGAAATTGCCCAAACTGTGA
GAAGAAGTACAGATGCAGGAGGTAAATGGAAAGATTCATTTAAAAGACCA
GCTTTTACATGTTTCTGTGTGGGTAATCGGTCAGCCTTTGAGCACGGCTT
ATTCAAGAACATAACTATGTATGATAGTGTTGCAATAAGATTTGAAATGA
ATTGATCTTATACTCAGTAAATGGTGTAAACTACATTTGAAACAAACTAT
CCATTTCCAAGAAATTGTATTTATGGGTGGAGCCTCGTGTCAGTCAATCG
AATTATTTATCGTATTTAATCAACTTTTCAATTCAAGACCTCCATTTAGA
CCAGAATGATCGATGGTAATTACTTTACCTTAAATTGACTTAACCTTTGG
ATATTTTGGACGTATTGCACTTTCGtcgtctttttagagtaaaTGTATGA
AGAGTTTATAAAAATTACtaaattcaaaaatcatttcgtaGATAACTAAT
AATTCTCGGGTACgtaatagccggggg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048160-exon-scaffold_141-1491911889:201417..201487 | TCONS_00048160-exon-scaffold_141-1491911889:201417..201487 | Clytia hemisphaerica | exon |
| TCONS_00048160-exon-scaffold_141-1510915933:201417..201487 | TCONS_00048160-exon-scaffold_141-1510915933:201417..201487 | Clytia hemisphaerica | exon |
| TCONS_00048160-exon-scaffold_141-1575043694:201417..201487 | TCONS_00048160-exon-scaffold_141-1575043694:201417..201487 | Clytia hemisphaerica | exon |
| TCONS_00048160-exon-scaffold_141-1491911889:201703..202993 | TCONS_00048160-exon-scaffold_141-1491911889:201703..202993 | Clytia hemisphaerica | exon |
| TCONS_00048160-exon-scaffold_141-1510915933:201703..202993 | TCONS_00048160-exon-scaffold_141-1510915933:201703..202993 | Clytia hemisphaerica | exon |
| TCONS_00048160-exon-scaffold_141-1575043694:201703..202993 | TCONS_00048160-exon-scaffold_141-1575043694:201703..202993 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_141 | supercontig | scaffold_141:201417..202993 + |
Blast
The following BLAST results are available for this feature:
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