TCONS_00048158 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048158
Unique NameTCONS_00048158
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length688

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048158 ID=TCONS_00048158|Name=TCONS_00048158|organism=Clytia hemisphaerica|type=transcript|length=688bp
CGAGACCAATCAAGACAACATaaaaacttatgTATCAGTTTACTATGAGA
ATGAGGTGGGACCTCGTGACGATACTTTAGAATGGCCAATGCCTTGGAAA
TCGTTGACTTTCACTTTAATCTTTAATGGAGTTGAAATTGCTCAAACTGT
GATAAGAAGTACAGATGAAGGAGGTAGATTGAAAGATTCATTTAAAAGAC
CATTTAATCCATGGGCTTACCAGCTTGGAAATCCGTCAGCATTTGAGCAC
GGCTTATTCAAGAACATAACTATGAATGATAGTGTTGCATAAGATTTGAA
ATGAATTGATCTTATACTCAGTAAATGGTGTAAACTACATTTGAAACAAA
CTATCCATTTCCAAGAAATTGTATTTATGGGTGGAGCCTTGGATTAGTCG
ATCGAATTATTTATCGTCTTTAATCAACTTTTCAATTTAAGACCTCCATT
TAAACCTAAATGATCGATGGTAATTACAGTAATTACTTGACCTTACTCTT
AGATTGACTTCGCCTTTGGATATTTTGGACGtatgttttcttcttctttt
tagaGTAAGTGAAGAGTTTATAAAGATTACAAATACTCTTTTGGTTccaa
ataattttcgaaaattaacaATCAGGGGTggttatttggaacctaagacc
atgttcagaaacgaaacggttccgaaacaagtgtgaac
Run BLAST on NCBI

transcript from alignment at scaffold_141:198058..207762+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048158 ID=TCONS_00048158|Name=TCONS_00048158|organism=Clytia hemisphaerica|type=transcript|length=9705bp|location=Sequence derived from alignment at scaffold_141:198058..207762+ (Clytia hemisphaerica)
CGAGACCAATCAAGACAACATATACACTTATGTGTCAGTTTTCTTTAATA ATGAGGTGGGACCTCATGACGATACTCTAGAATGGCCAATGCCTTGGAAA TCATTGATTTTCACTTTGATATTTAATGGAGTTGAAATTGCTCAAACTGT GAGAAGAAGTACAGATGAAGGAGGTAGATGGAAAGATTCATTTAAAAGAC CATGTAATGTATGTGCTTACCGGCTTGGAAATCCGTCAGCATTTGAGCAC GGCTTATTCAAGGACATAACTATGAATGATAGTGTTACAATAAGATTTGA AATGAATTAATCTTCTAGTCATTAATTGGTGTAAATGTCGTTATATATTA CGTTTTCGtcgtctttttagagtaaaTGTATGAAGAGTTTATAAAGATTA GAAATACGGGGgcgttggaaaattttcaaatttagttCGATAACCTCGAA CAAATACCAAAACAACGTCTAGtctgtccatatcttctgacgactggacg acagatgaagattAGACAATAtttaataaattctaaaattatttcgtaga taattaattaataattctatgaataaattAAGTAAAGTGAATGAATATGG AATGCAATCATTAATGCttatatgaaaatttgaataatttctTGAAACTG TTACTAAGAACAATGAATcaacaattcgcaaaaaatgAATAACCTTcctg atttttcgattttatgcTCAAATTGCTGATCTAAGTGATAGCGTATTATA GGgtgattcttgagaaaaacGTGTGTTTTTAGGGCGAAAGGTTCTACAGT GTTATTATAAAGGAACTATCACTCTTACCTAAGTAGTTTCATTTTTCTAA GGAATGCTGTGTCTTTAAATTTCAAGGCCATTGATTTGTCTATATTCTGt tttttgatagatttttttgttcaagaggtattttgaaagtgatagtaTCG AGATATGAGCTTACTGTAGCAAGCTATAGTTTCGGAGAGGGAAGAGAAAc ggaaatttctttttaatctgATCCTTTAATTATTTGTGAAAAGTTCGATC TTGATCgctgaaaattagatttttaaataatatggcAGCTTGTAAACCAG AAGAGTATGGTTTTGATGTGACGTTCATCTGGGAAGACGAAAAATCTGAA GTATCTGAAACAACAGAAGAAGATTCTGTACAGAACGCCAAAGAAATCAA TAGAGACGATATCACTTGTGCAATATGTCTTTTGGTTTTGCGAGAACCAG TACAAGCCGTGAAATGTGGGCATcgattttgtgaaaaatgtaTTGGGGAA TTTCATCTTCAGAAGTAAGTGTGAACAGTAGTAAGTTCACGTCgaaattt tctatatttttgttgGTCGTCATTTTCTTGTGTTCTATAAAAAGTTTTCG TTAAGCAAAGAATCTACTACTCAAATTAATTGCATTGGAGAATCTTTTAT GTTAATCATTTTATTCTAGTCCGGGGAAATGCCCCAAAGATTGGCAAGAG ATTCAAGTTTTTCCAGATgtgggaaaaaaaagagaaatactCAGTTTGAA AATTCGATGTCCGAATTTCGTTGATGGATGTACGTGGCAAAATGAGCTCA GAGAGAAAGAGGTTTGTAGGCGTTATTTCATTCGATATCATCTGTACGCA GAAAGAAGAAGTTTTCAAAAGTGGAGGGATAGTACTTTGAATCTTTCTTT CCAAATTCTAATTCTGGGATCTGGCACTGTGTTAAAATCCTAAAGACCCT TCACTTTCCGCAAATTTTTACTAAATTGGATACTTAAGCTATGCTCTCAT TAGGGCCAATTTATGAAGTGAAACCATATCACCTTGGAGGGAGGGGGGAG GAATCTACTTGATGGTATTTATAATGATTTTGATTCAAAGGGGAAGAGCC TAGGGGTAGAGGAGGTTGATCTATACCTAGTAGTAAACCCCTTCCGTACT TAAGCTTTAGGCCAATTTTCCTATTTAGGGTCGATTTCTTTTGCGATAGA TAATAACAATCCTTAATCATTGTTTTAGGTTCACCTGAAAACTTGCGGTT TTGTGACCGTTCCTTGTGAATTGGATTGTGGAGAATTCGTCCTCCGTAAA AACGTAAGAACAATTTGTTATCTTTTGTAAGATATGTGAGAGGCCtggaa aacacgagttaaaggACTTTAAAAAACCTCGGGTCATAACTCTGGTTTTC TTTACCCGGGTTTTTCAGACCTCGATATGTGAATACAAACCATGAAAACA CTCGGGATAACTTTTTGTGAGGCCCTGAAAACCGGAGTTCGGCAAACCCT AGTTACCTATTTTCATAACTTGagagaaatgacgtcattttagaAGATAA CTTGATTTATGATAATAACTCGATTTGTTTGTGGTTACCTTAATCGTTCG AGTTAGTTAACTCGGTTGTTACGAAAATATGAgttatgaaaatttgtttt ccgGAATCTTTTAACCCAGTCTTTTTGGTGTATGTTTTTTTGAGTTTGTT AACTCGGATTTTCAAGAGGCCCGAAAGAGCTGATGTTGAAAAACTCGAAA TATCTTACTAAGAGGGAGTTTTAGTACGAATCTATAAAGGTGACCTCTTA TGCAAATGAAACATTTGCTTCAAAAACGACAGTGGAAATCTCATCTTAtg attctcaacttcagttgagctaaaAAAAaggttatgacgtcataaaccgG GTTTTCTTAACTTGGGTTTTTCAGGCCTTGATATGTGAATACAAACCATG AAAACTTTCGGGATAACTTTTTGTGAGGCCCTCAAAACCCaagttataaa aattaaaaattataaaaattgttAGAACAACCCAAGTTAGAAAAGCCCGA GTTTGGCAAACCCTAGTTACctatttgtgacgtcataacttgAGAGGTAT GACGTCATTTTAGAAGATTTATAATAATTCGATTTTTTGTGGTTACCGTT ATCGttcgagttaattaactcggtTGATTATGATGAACCTTAATTTTTCT AGTTagcaaacttttatttttaaggcGCCCCTAAATTTTTCGTATTTTAG AGGTGTACcataaaaaatcgagttttttaCTGTATGATTCTTTTTTCGAG TTACTTGACTCGGATTTTTAAAATGCCCGAAAGACCCGAGGTTGAAAAAC TCGAAATATCTTACTAAGAGGGAATTTTAGTACAAATCTGTAAAGGTGAa cccttacgcaaatcgaacatTTACTTCAAAACGACAACAGTGGAAATAAC TTTGTAATTCAAGAGATTTTTTTGGATTAAATCCTATCTTATAACATGTT ATAATTCATCTGCAATTGTAAGACATATCATTTTAGTTTACAGATTCTTC TTTAGATAACAAATCATGTGGATACCGTATGTCCAATGGTCTCCTCTTGT GAATACAAAGACTCAGGATGTTACTTTAAGGTAAATTTTTCTTATGTTGA AGCTGAAGTGCTAgctttattttgtcttttttcaaaGTAGCTGTACCGCA GCACTATCCGAATTTTTGTCATCTTGGCGCGTTTGAGGCTTAAGGAACGT TTGGATTGTTTAAAGTAAGTACGGTAAAGTATAGAGGttaaaaaaactgt tatattatTTGAAAAGCTAAGAGTCTCTAAATTGTTTGGTTTCAGGGCAC AAAGTTACAACTGGATAATCATATGGCACAATCGGCCAACATGCATTTGT CTCTTGAAATGAAAAGtgagattttcaaaatgaaaaaagaattcgATCAA AAGTTAACAGCAAAAGGTCTTGAAGctcaacaaatgaaaaatgaatttgc tGAACAGTTGAAAATGAGGGACAACGAAATCGGAAAAGTCCGGTTGGATC TTGATGGAGACTTGAAAGCAAAAGACAAAATGATTCAAGGATTAGCGGAG CGGTTAAAAATTGCAGAAGAGAAATTGAAAGGGGTCGGCGAAATAGAAAT CAAAGTTCAGATGAACCAAACCGCCATCAAGTCcttggagaaaaaattgt tgACGAAGTTGAAGACAACCGATAAAtctctttttgatttgaaagaagAA TTTATGCTGACTAAGCAGGAAgttgaaaaagtcaaagaacAGCATCAAAA AGACGACCTTTTTAAAGCATCGGGTAGAGGTTTAGCTGTAAAAGGGGAAT TAAATTTGGCTATCTGCGCACCATCACTATGTAACTATACATGGACTATC GAAAATTTCAAAGAGAAATTTGACGCTGCTACGGAATGGAGAGAGTATAA TTCACCAAGTTTTTTTACTAAGCATGGTTATAAAGGATGTATTTCCTCTG GGTTTCGCCAGaccaataaagacaaaaaaaaccCTTGTCTATCAGTTTAC TTTCAGAACAGAGTGAGTCCTTATGACGTTACTTTAGAATGGCCAATGCC TTGGAAATCATTGATTTTCACTTTAATCTTTAATGGAGTTGAAATTGCCC AAACTGTGAGAAGAAGTACAGATGCAGGAGGTAAATGGAAAGATTCATTT AAAAGACCAGCTTTTACATGTTTCTGTGTGGGTAATCGGTCAGCCTTTGA GCACGGCTTATTCAAGAACATAACTATGTATGATAGTGTTGCAATAAGAT TTGAAATGAATTGATCTTATACTCAGTAAATGGTGTAAACTACATTTGAA ACAAACTATCCATTTCCAAGAAATTGTATTTATGGGTGGAGCCTCGTGTC AGTCAATCGAATTATTTATCGTATTTAATCAACTTTTCAATTCAAGACCT CCATTTAGACCAGAATGATCGATGGTAATTACTTTACCTTAAATTGACTT AACCTTTGGATATTTTGGACGTATTGCACTTTCGtcgtctttttagagta aaTGTATGAAGAGTTTATAAAAATTACtaaattcaaaaatcatttcgtaG ATAACTAATAATTCTCGGGTACgtaatagccggggggattggaataagca gggggttggaaataatctcaaaacttaataagcaggggggttggaataaa aatgtcctggatggaaaatttttgaaaaggaggctaatacagctgaatta ggacaaaagagggaactttcaaaaacattttcccaaaaattaataagcag gggggggtggaataagaatgtcctgggtggaaaatttttgaaaaattaat tagcggggggggcggctatttaggcacccgagagtaataattctatgaat aaataaaataaaatgagtGAATATGGAATACAATCATTAATGCCCATATG AAAAGATTGAATTACACTATTTTATTAACTGTTACTAAGAACAATGAATC AACAAttcgaaaaaaatgaataaccttgatggcttactgatttttcgatt ttatgcTCAAATTGCTGATCTAAATGATAGCGTATTATAggataattctt gagaaaaacgtGTGTTTTTAGGGCGAAATGTTCTACAGTGTTATTATAAA GGAACTATCACTCTTACCTaagttgtttcatttttctaagGAATGCTGTG TCTTTAAATTTCAAGGCCCTTGATTTGTCTATATTCTgtttttgatagat ttttttgttcaagaggtattttgaaagtgatagtaTCGAGATATGAGCTT ACCGTAGCAAGTTATAGTTTTGGAGAGGGAAGAGAAacggaaaattcttt ttaatcTGACCCTATAACTATTTGTGAAAGTTCGATCCTGGTCGccgata gatttttaaaaaatatggcAGCTTGTAAACCAGAAGAGTATGGTTTTGAT GTGACGTTCATCTGGGAAGACGAAAAATCTGAAATATCTCAAACAACAGA AGAAAATTCTGTACAGAACGCCAAAGAAATCAATAGAGATGACATCACTT GTGCAATATGTCTTTTGGTTTTGCGAGAACCAGTGCAAGCCGTGAAATGC GGGCATcgattttgtgaaaaatgtaTTGGGGAATTTCATCTTCAGAAGTA AGTGTGAACAGTAGTCAGTTCACGTCgaaattttctatatttttgttAGT CGTCATTTTCTTGTGCTCTATGAATTTTTTCGTTAAGCAAAGAATCTACT ActcaaattaatttattttagtCCGGGAAAATGCCCCAAAGATTGGCAAG AGATTCAatgggaaaaaaaagagaaatactCAGTTTGAAGATTCGATGTC CGAATTTTGTTGATGGATGTACGTGGCAGCATGAGCTCAGAGGGAAAGAG GTTTGTTTTCAGTCGTTATTTCATTTGATGTCATCTGTACGCAGAATAAA GAAGTTTTGAAAAGTGGGGGGATAGTACTTTGAATCTTTCTTTCCAAATT CTAATTTTGGGATCTGGCACTGTGTTAAAATCCTAAAGACCCTCCACACT TTACGCAAATTTTTACTAAATTGGATACTTTAACTTATGCTCTCATTAGG GCCAATTTATGAAGTGAAACCATATCACCTTGGATGGGGGGAGTCTACTT GATGATATTTAGAGGAGGGGTAGAGTGGGTTATCTATAACTGAGGTAGTA AAcccttttcaatttcattttgaaatagatttaatAACAATcctttatca ttgttttaggTTCACCTGGAAACTTGTGGTTTTGTGACCGTTCCTTGTGA ATTGGATTGTGGAGAATTCGTGCTCCGTAAAAACGTAAGAACGATTTGTT ATCTTTTGTATAGTATCAGAGGGGCCTGAGAAACACGAGTTAAAAGACCT TAAAAAACCCTAAAGTTATGACGTCGTAACTCGCGTTTTCTTAACTCGGG TTTTTTAGGCCTTGAATACAAACCATTAAAACTTTCGGGATAACTTTTTG TGAGGCCCTGAAAACCCGAGTTTGGTAAACCCTAGTTACCTATTTGTGAC GTCTTAACTTGAGAGGTGTGACGTCATATTAGAAGATTTataaaaattcg atttttttgtgGTTACCTTAATCGttcgagttaattaactcgtttGATTA TGATGAAGCTTAATTTTTATAGTTAGCAAACTCTTATTTTTAAGGCGCCT CTtaatttttcgtatttttgtttatgaaagttttattaaatttatgaaac taaaaaaaaatttacttatgaaatttattttttggaatcttttAACTTGG TTTTTTTggtgtatgattttttttttcgagttaCTTGACTCCGATTTTTA AGATGCCCGAAAGACCGGAGGTTGAAAAACTCGAAATATCTTACTAAGAG GTCATTTTAGTACAAATCTGTAAAGGTGAccccttacgcaaatcgaacat TTGCTTCAATAACGACAACAGTGGAAATaacttactcttgtctcccgaat agacaggggaggggtccgaataagcagggggcaGGAAAATTTTCTGAATT CTAATAGGAGAATAAGAGTGGGttaatttgaattttgtttaactgatatc aatttcaaaaacaaaaaagaaactttaacaaatgaacacgtaaataAGAA CCAActtactaacaaaaaggaaaattttattaagtttaaggtctatctac actgtaataaaatattcaattattcgaatttaaatTAGCGGGGGGGGTCT AGAGCgtggggatggatttttttttcttttaacaatTAGTGGGGGGGAGA CGTCTATTCGTGAGACAAGATTAGTATTTCAAGGGATTTTTTGGATTAAA TCCCATCTCATAACATCTTATAATTCTACAATTGCAGACATAATTATATG GTtcattacatttagcttagatttgtaaaggacgaGCGGGGCGATAAATC CGTAATAGCCCCGcttttttgtaatcgccctgatgtaaacaaaaatttct attggttgaaagaaaagtatcgtacgatattttgattggttaacaaaata ttgtacgaaatttttaacccaatcaaaataagagtgtcagtcgaatgttt ttttatagtttcgaatgtttttataagtttcgaaaagaatacatgttatt actagtactaatattTTAGTTTACAGATTCTTCTTTAGATAACGAATCAC GTTGATACAATATGTCCAATGATCTCCTCTTGTGAATACAAAGACTCAGG ATGCTACTTTAAGGTAAATTTTTCTTATGTTAAAGCTGCTTTTTTCAGTT TCCAAaggaatgaaatgaaaatttccgaATAATTCGAGAGACGAACTAAG CTGGCTGGCTAAAAAAGACTCTTTCGTTNTTGCAAAGGaatatgaaatga aaatttctaagCTGGCTAACTGAGTCTTTCGTGAATAAAGTGCTACAGTA TCtttattttgtcttatttttcaAAGTAGCTGTACGGCAGCACTATCCAG TTTTTTGTCATCTAAGTAAGTACAGTAAAGTATATAGGTAATAAGCCAga tatattatttaaaaagcTAACGCAGTTTCTAAATTGTTGGGTTTCAGGGC ACAAAATTACAAGTGGACAATCATATAGCACAATCGGCCAACATGCATTT GTCTCTTGAAATGAAAAGtgagattttcaaaatgaaaaaagaattcgATC AAAGGTTGACTGCGAAAGATTTTAAAGctcaacaaatgaaaaatgaattt gctGAACAGTTGAAAATGAGGGATAACGAAATCGGAAAAGTCCGGTTGGA TCTTGATCGAGACTTGAAAGCAAAAGACAAATTGATTCATGTATTAGCGG AGAGATTAAAAATTGCAGAAGAGAAATTGAAAGGGATCGGCGAAATAGAA ATCAAAGTTCAGATGAACCAAACCGCCATCAAGTCcttggagaaaaaatt gttgACGAAGTTGAAGACAACCGATAAAtctctttttgatttgaaagaag AATTTATGCTGACTAAGCAGGAAgttgaaaaagtcaaagaacGGCATCAA AAAGAGGAATTAAATTTGGCTATCTGCGCACCATCACTATGTAACTATAC ATGGACCATCGAAAATTTCAAAGAGAAATTTGACACTGGCCCGACTTGGT TGCCACATAATTCGCCAATGTTTTTTACTAAGCATGGTTATAAAGGATAT GTTTCCTCTTGGTTTCGCATGACCAATCAAGacaaaacaaaaacttatgT ATCAGTTTACTATGAGAATGAGGTGGGACCTCGTGACGATACTTTAGAAT GGCCAATGCCTTGGAAATCGTTGACTTTCACTTTAATCTTTAATGGAGTT GAAATTGCTCAAACTGTGATAAGAAGTACAGATGAAGGAGGTAGATTGAA AGATTCATTTAAAAGACCATTTAATCCATGGGCTTACCAGCTTGGAAATC CGTCAGCATTTGAGCACGGCTTATTCAAGAACATAACTATGAATGATAGT GTTGCATAAGATTTGAAATGAATTGATCTTATACTCAGTAAATGGTGTAA ACTACATTTGAAACAAACTATCCATTTCCAAGAAATTGTATTTATGGGTG GAGCCTTGGATTAGTCGATCGAATTATTTATCGTCTTTAATCAACTTTTC AATTTAAGACCTCCATTTAAACCTAAATGATCGATGGTAATTACAGTAAT TACTTGACCTTACTCTTAGATTGACTTCGCCTTTGGATATTTTGGACGta tgttttcttcttctttttagaGTAAGTGAAGAGTTTATAAAGATTACAAA TACTCTTTTGGTTccaaataattttcgaaaattaacaATCAGGGGTggtt atttggaacctaagaccatgttcagaaacgaaacggttccgaaacaagtg tgaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030652XLOC_030652Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048158-exon-scaffold_141-1491911889:198058..198078TCONS_00048158-exon-scaffold_141-1491911889:198058..198078Clytia hemisphaericaexon
TCONS_00048158-exon-scaffold_141-1510915933:198058..198078TCONS_00048158-exon-scaffold_141-1510915933:198058..198078Clytia hemisphaericaexon
TCONS_00048158-exon-scaffold_141-1575043694:198058..198078TCONS_00048158-exon-scaffold_141-1575043694:198058..198078Clytia hemisphaericaexon
TCONS_00048158-exon-scaffold_141-1491911889:207096..207762TCONS_00048158-exon-scaffold_141-1491911889:207096..207762Clytia hemisphaericaexon
TCONS_00048158-exon-scaffold_141-1510915933:207096..207762TCONS_00048158-exon-scaffold_141-1510915933:207096..207762Clytia hemisphaericaexon
TCONS_00048158-exon-scaffold_141-1575043694:207096..207762TCONS_00048158-exon-scaffold_141-1575043694:207096..207762Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_141supercontigscaffold_141:198058..207762 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048158 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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