TCONS_00048143 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048143
Unique NameTCONS_00048143
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length319

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048143 ID=TCONS_00048143|Name=TCONS_00048143|organism=Clytia hemisphaerica|type=transcript|length=319bp
TTTCGCAGTATTCAATCAATTTCACTTGTTCGTTATGTATTCCACTGACA
TTTTCTTTTAACTTTGCAAACGATGTGAAACACAAGTTATCCTCTGGTAA
ATGTAGTTGAATTGTTGTAAGTATATCATTCATACattcattgGAAAGGT
TATGTCTTAGGGAAAGACCTAAGTTAAGAGCAGCATGATCTTTGATGGTT
AGCCGTGAATGTTTATTTCCTATGCTATAGACCCAATCATCCTCATAGTC
AGAACAATCGGTCTCATCATCTGACGCTGGACAGCATTCTTCATCACTAC
TTTCTAAATCCGAAGGATc
Run BLAST on NCBI

transcript from alignment at scaffold_141:77393..81438+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048143 ID=TCONS_00048143|Name=TCONS_00048143|organism=Clytia hemisphaerica|type=transcript|length=4046bp|location=Sequence derived from alignment at scaffold_141:77393..81438+ (Clytia hemisphaerica)
TTTCGCAGTATTCAATCAATTTCACTTGTTCGTTATGTATTCCACTGACA
TTTTCTTTTAACTTTGCAAACGATGTGAAACACAAGTTATCCTCTGGTAA
ATGTAGTTGAATTGTTGTAAGTATATCATTCATACATTCATTAATGTCAA
GAATTCTGACTGGTGGGGCGGTGACATCACTGATCCTGGTGGTAGAGATA
TTCAAAATCTAGCTACCCAGCATGGTCTGCGACAATTAATTGATGGACCT
ACTCACCTCCCTCAAAATTCTTCTTCTTGCATCGATCTAATTTTCTCATC
AGCAGATCATTTGGTCTTGGATTCTGGTATCCTTCCCTCTTTGCACCCTA
AATGCCATCACCAGATAACCTTTtgcaaattaaattttaaaatccctTTA
GCTCCATCTTATGAACGTAAAATTTGGGACTTTTCCAGAGAAAACCCCAT
TCGTATTCGGAGGGCATTAGACATGGTAGACTGGGATGTATGTTTTGAGG
GTCTTGATGTCGACGGGAAGGTTTCCCTTATGACTGGAACTATAATCAAT
ATCATGTCAAATTTTGTGCCAAATAAGGTCATAACCGTCAGGAACAAGGA
AGCAGTATGGATGACGGCTGGGATAAAGAGAGCCTTACTTGAAAAATCTA
AAGTCTATAAGCGGTATGTCAAAAATGGGAGGAGGGTAGAAGATCTTGAA
ACCCTCCATGAACATCAGTCTAGGTGTAGAAGGGTNNNNNNNNNNNNNNN
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CTTCTAAACAGGCTGTTGAAGTGTACTTCACTCGGAGGATAAATCTACCT
GATCTTCCAGAAATTTATTTTAACAACGCAGCCATTGCTCGACAAGATCA
ccaaaaacatcttggtctcatTCTTGATCATGAGCTGGCTTTTAACCGTC
ATCTtgatcaaaaaattaaaaaagccaaTCAAGGTATTGGTCTTATTCGT
CGGCTTCGTGCATTCCTACCTAGGGATTCACTAGTCACGATATTTAAAAC
CCATATTAGACCATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNAAGACTAATTTACTTTTATAAAATANNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCAAAGAGGG
GAGGAGGAACGTAGGGCAGGGCGGAGGATACAACCACCATTTGAGGCACC
ATTTTGTAGGACTGAACGTTACCGTGCCTCCTTTTTCCCCTTTTGCATCA
ATGAGTGGAATAACCTGGGCGAAAATATACGAAATCTTCCATCTATTTCA
TTATTCAAACAagcgattcttaaatttctcaGACCTTGCGCTAACTCAGT
TTTCAGGGCTAGTGACAACGATGGCGTGGTTCTActtaaccgattaaggg
ttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACaagccgtt
ttgggggaccgttattttagtcttttactccaactgctctcctagctctt
ttagtttttgttttttatttctgttagtatttatcctctgtagtttgttt
tcttttttccatcTATTAGTTCATTTAATAGTTTATTGTTAGCTTAGTAG
GGTTCCTATttcctggcggtatgatctggtggtccttttgcgggaggcta
ggaacctttagttttgtactatttgttcgtgttacctatatatagataaa
aaaaaaaaatacattcattgGAAAGGTTATGTCTTAGGGAAAGACCTAAG
TTAAGAGCAGCATGATCTTTGATGGTTAGCCGTGAATGTTTATTTCCTAT
GCTATAGACCCAATCATCCTCATAGTCAGAACAATCGGTCTCATCATCTG
ACGCTGGACAGCATTCTTCATCACTACTTTCTAAATCCGAAGGATc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030648XLOC_030648Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048143-exon-scaffold_141-1491911889:77393..77527TCONS_00048143-exon-scaffold_141-1491911889:77393..77527Clytia hemisphaericaexon
TCONS_00048143-exon-scaffold_141-1510915933:77393..77527TCONS_00048143-exon-scaffold_141-1510915933:77393..77527Clytia hemisphaericaexon
TCONS_00048143-exon-scaffold_141-1575043694:77393..77527TCONS_00048143-exon-scaffold_141-1575043694:77393..77527Clytia hemisphaericaexon
TCONS_00048143-exon-scaffold_141-1491911889:81255..81438TCONS_00048143-exon-scaffold_141-1491911889:81255..81438Clytia hemisphaericaexon
TCONS_00048143-exon-scaffold_141-1510915933:81255..81438TCONS_00048143-exon-scaffold_141-1510915933:81255..81438Clytia hemisphaericaexon
TCONS_00048143-exon-scaffold_141-1575043694:81255..81438TCONS_00048143-exon-scaffold_141-1575043694:81255..81438Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_141supercontigscaffold_141:77393..81438 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0.214471	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048143 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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