TCONS_00048138 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048138
Unique NameTCONS_00048138
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length292

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048138 ID=TCONS_00048138|Name=TCONS_00048138|organism=Clytia hemisphaerica|type=transcript|length=292bp
TTTATGTTCACGTACAAATTTTGGTCATTGTGCAGCTATGACCTTACCAT
TGCTGGGAGTGTCAATATTGTCAgcaaacaaaataacaaaaaagctgACC
ATCATTCCATTTCAGTCTTTCATGTgtattttccaatattttaacaAAGT
TTGACCAATCTGACATAAATTATAGTCAGGAAAGTCATATATAATATACC
AAACTATCACATGTTCAATTTAGAAATTCATTTCCAAATAAGTCCTGTCA
TTATAATGTCAATTTAAAGAAATGCAtatcgatttttttctg
Run BLAST on NCBI

transcript from alignment at scaffold_140:232400..232691

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048138 ID=TCONS_00048138|Name=TCONS_00048138|organism=Clytia hemisphaerica|type=transcript|length=292bp|location=Sequence derived from alignment at scaffold_140:232400..232691 (Clytia hemisphaerica)
cagaaaaaaatcgataTGCATTTCTTTAAATTGACATTATAATGACAGGA
CTTATTTGGAAATGAATTTCTAAATTGAACATGTGATAGTTTGGTATATT
ATATATGACTTTCCTGACTATAATTTATGTCAGATTGGTCAAACTTtgtt
aaaatattggaaaatacACATGAAAGACTGAAATGGAATGATGGTcagct
tttttgttattttgtttgcTGACAATATTGACACTCCCAGCAATGGTAAG
GTCATAGCTGCACAATGACCAAAATTTGTACGTGAACATAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030643XLOC_030643Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048138-exon-scaffold_140-1491911889:232400..232691TCONS_00048138-exon-scaffold_140-1491911889:232400..232691Clytia hemisphaericaexon
TCONS_00048138-exon-scaffold_140-1510915933:232400..232691TCONS_00048138-exon-scaffold_140-1510915933:232400..232691Clytia hemisphaericaexon
TCONS_00048138-exon-scaffold_140-1575043694:232400..232691TCONS_00048138-exon-scaffold_140-1575043694:232400..232691Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_140supercontigscaffold_140:232400..232691 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.67143	0.42481	0	2.00969	0	0	0	5.41861	3.01732	0.81564	2.11566	1.80817	1.39366	5.25643	2.23317	1.19917	1.83764	2.77509	2.88078	7.54339	9.67208	1.81494	2.54627	0	0	7.77013	4.36958	7.58935	2.08267
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048138 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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