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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048128 ID=TCONS_00048128|Name=TCONS_00048128|organism=Clytia hemisphaerica|type=transcript|length=1294bp
ATTTGCTTCTTGTCGTGGTGAAGGACGGTGGTTCGGGAGACTCAaaattt
tgactgatttttttaaattaatttcacCTGTCATAACATGGCCAAACGTA
CGAAAAGAAAGACAGATGGTAGAGGACCACAATGTGTTGTCTGGGTTTTA
TGaatCATTCATCCTTGACGAACGGAGAATCATTGTATTGGCGCCATAGA
GAGCTTTGAAGATTGCTGCTTCAACAACAGATTACGATATACTgaaatct
gTTCATCAAACCACGGCGATATTCAAATACTCTGGAAgcattttaaacgt
tttttcttGTTAGACTTCCAAGCGAAACGTATGGTACAACCTGTGGAATC
TCTTCTGTGGTCTTTTGGGAAAATGGTGCGGATTAGCATTGCATAGCAGA
AAGAATGTAGAGCTCAGTTAACCATAGTTGATTTTGATGCAGATGATCGT
CACTGAAGATTGATGCAGGATACATCAACGACGCCACAATGCTTGTGCTT
ATTTTATACTTGTAAGGAAATAAATAAAGTCtccgtcataaattttgaat
cCCCCTCAGATCCGCCACTATGTATTGCGCTTACTTCTATAGCTTTTTTA
GACCACTTGCAAagaatttttcatttgaaaaaccTCCTTAAAGCAGAAAG
TGCACGTTCAAGACGAGCTTTTTCTTATTAAAAGTACATAACTCGAAGCT
TCCCTGTCTCAAAGCCccattcagttttcaattggAATAATTTTATGGAT
TAATATCTCAAAGTGGTTGAAATTTAGGGATTTTtaaaagcggacaaatt
ttaagtcaaattttTAGGTTTGTGACACAGGTGTGTATTGCCGTGGTCAT
AGTAAGCCATGGTTGATATTTTTAAAGCAGATTGTATCTATCAAAAGCGT
CTGTTGGGTGTTTGTTTTATAAATTCTTCTCCCAATAAGTTTTGATTAGA
AATGGCATCTAAAGTTTTAAAACTTGAAGAAATGAAATTCTAGTTTTTGG
CCTGTTTTATTCAATTCGAACTGTTTTACAAGAATAATTTTGATGCACAA
AACATCTTTTGGGATACTTTTATTCACCAGGTGTTAATTTATATATCATC
ATTACAAGCTCAATATTGACAAAGCTAAGACTTTAGACCAGCGGCCAAGG
TAGTGCtctgtgtcacttcgtagggcaccccttagatcaaggcaaatttt
tgatattatgcccCTAATAGGAAGTcaaatctcctgcagttttcaagtga
atcgatttttatttcaagggtccttctttactaacggttttttc Run BLAST on NCBI transcript from alignment at scaffold_140:184345..189003- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048128 ID=TCONS_00048128|Name=TCONS_00048128|organism=Clytia hemisphaerica|type=transcript|length=4659bp|location=Sequence derived from alignment at scaffold_140:184345..189003- (Clytia hemisphaerica)
ATTTGCTTCTTGTCGTGGTGAAGGACGGTGGTTCGGGAGACTCAAAATTT
TGACTGATTTTTTTAAATTAATTTCACCTGTCATAACATGGCCAAACGTA
CGAAAAGAAAGACAGATGGTAGAGGACCACAATGTGTTGTCTGGGTTTTA
TGGTATGCCTTTCTTGTTTCAATCTGGTGGTTTTACAGTTTTGAAAAGTT
TAAAAGGCTATTTTAATGTTTTTAAGCTGTAGATTTTGCTATATTTAAGA
GATCGTTTTTCTCACAACAAGGCAATCTGCGACTTTAATTTCAGTGTTTT
GATTTTCGCTCTTGAATCTTGTTGTTTACTTGAGAAATCGTGTCTTTCTC
ATACATTAAGAAAAATTGTCTCGTGAAACACATTCCTTAGGAAATTTTAA
TTGCTTTGTATACGGCAGTTTTAGAAACATTGTTCAATTAATTCTCTGTC
AGGTAGTCAAAATTATAGCTTGTAATGGCAAGATAATGTGTTGCATTGTG
ATGCTGTGGCTGTACATAAATTGAGTATTTTGTGAAGTTAGATTTTTCAG
TACCGTGAATGTTGATCGGAGAATTATATGAGTTATATGATGTATACACT
TAAAGAATGATATTCTGTGTGTTTTGAAGTTTATATATATATTTTTTGTT
GACCTTGAAAATACAAACTTAATGGTTCCTGGTTGGCATTACACACGAAT
GAACCATTATAGGGATTAAAGTAATTAACAATGAAGATTGTCTTCTCACT
TCTAAAACATTTATCTTTTGTTTCAAATTTTCATTGCAACTCTCTTTGAA
AGAATTAATTGTCATTTCTGAGCAGTGACATCGAGTAACAGTTTTATTGC
ATTTCTGTTTTTATTTATGATGGAACTGCACATTTTCAGGTTTGTACCGA
ATTAAGCAAATGGTCAGACAGTTAAAAACAATGAAGTATAAGCCCGAAGG
GCTAGAAGTCAATCTCCTTGGTAGGATTTGAAGCCAACAAATCCTACCAA
AGTTGCGTGGCCTTGAGCGGCTCGCCTGGTTTTTACACAAATGANNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTTTTCGAAAAAAATATCAATCGTAAACA
AAGGGATTGCTAGATTCAATCTGTCGTCAAAAATACGGCGCATTTTTTAA
GGCTTCACTTTTTCTTGCCTGAGAAAGGTCAGAGATTGACCTCTAGCCCT
TCGGGCTTTAAACTCAATGGTTAAAAAGATTTGAGAGAAAGGATTTCTGG
TCGGATTGTCGGAATCGTTTGTTTTGGTTGTGATTTTTTATGAATTCTTG
TTCAAGTTTTCTTGAAATGTCAATTTCAGGTTTATTGTGGATATGTTGTA
AGGCCTTTGGATGTTTTTAATTTAAAATTTTCAACCTTGAAAGTATTCTC
GGTATGTTTTTACTTTCAACAATATGGGAGTATTTTTGTACATGTTCCCA
AGATATATTTGGATTCGGCAAGGCGTTGAAATGTTCNCAACCCCGAAAGT
ATTCTCGATATGTTTTTACTTTCACCAATATGGGAGTATTTTTGTACATG
CTCCCAAGATATATTTTAGATTCTGCAAGGCCTTGAAATGTTCTTACTAC
TCTGTATGTCCTGTATCATGCTTGAAATTTGAAAACTTTTTCGAAATAAA
TCCTTACACAATTTTTTTTTGATTTTATATCTTTTCTTATAGCTCTTTAT
TTTTATTTTCCAGAATCATTCATCCTTGACGAACGGAGAATCATTGTATT
GGCGCCATAGAGAGCTTTGAAGATTGCTGCTTCAACAACAGATTACGATA
TACTGTAAGTTTATATACCCCTGGATTTATCCGTTTCTGATGGACGTTTG
GTTAAAGAGATTCCTGCATAAAAAATGAAACTTAANATAGAGAGCTTTGA
AGATTGCTGCTTCAACAACAGATTACGATATACTGTAAGTTTATATACCC
CTGGATCTATCTGTTTTTTCGGGACCAATTAATGATATTCTGATGGACGT
TTGGTTAAAGAGATTCCTGCATAAAAAATCCATGAATAGCTATAATGAAA
ATCGTTTAAAAAATTAAAGTCAAAGTTGTCAACAATGATTCTATCCTAAG
ATATTGACATCAGAAGTTCCAAATTCAAGACATCTGCACTCTGTGGAAGC
CATATTGAAATAATAATTTTAATTTCAAACTCTATGGTATCCTTTATCCA
TACTAGGTAAAGATTAGAGAATTGGATAAAAAATTAAATGACTTTTTATG
GTATACAAAACCTCTAAATGTGGTCAATCATACAAAAATCATTTAGTTCA
ACTTCGGGTATCCTTCTAGTCTGCTCTCAATTATTTTAGTATGATGACTA
GCTGGTATGAACAGAAGTTTTCCAAATTCAAATTTTTTCATTTTTGTATG
GCTTCCACAAAGTGCAGATGTCTTGAATTTGGAACTTTAGATGTCAATAA
CTTGGGATAGAATCGCTGTTGACAACTTTAACTTGAATTTTCCAAATGCT
TTTCATAATAGCTATGCCCTGACAAATTTTGATTTTCTGTGCTGGAATCC
CTTTAAATACCTTTCAGCCCTACTTGGAAATTAACTTTTGTTTCATCCCT
TCGAAATTCAACGTTTAAAAATTGCATTTCGAAATCATTGCCACTGAATT
TGCTAACCTTGAAACAAAGGAATTTCTATCCCCATTGGGATTTTAATAGG
AGTAGGAATTATCTCCACTGAGAAGAAAAGTTCCACCGGGGCTGTGAAAC
AGGGGTGTCTATGGTCGTGTTCACACTACAGACCTTCCTTAATAAAAATG
TAGCTAGGAGAATCTTTTGTTGACTATAATACAGAACGTGCATTTAACAA
AGAGTCGAACGCGTAGTATTGTAATTTTTAATCGATCTTCCTTAATTAAG
AGTCGTAAGCTCTATTGTCTTAAGGGTAGTGTAGAGGCTTCCCTTAAAAC
AAAAGATTTTATTAAGGAAGCATAAACAAAGAATGCGTGCAGTTAACAAA
AAGTTTTACGATTTCAAAAACGAATGAACTGAGGAAAAAATTAGAAATAG
TGTAAACGGTGTTGTTGATGTGTAAGATGAATGCAGTTATTGAGTAAAAC
CATTAGAACAAATATGTTTGCGGATTTCAATTGATGTATGGATACCAATA
TCAACCAATCACAGGTGAAATCGAAACTCTCAATAAAAAATCAACCAATG
AGAAGCCTTAAGCAAAATCAATTACCGTGTTNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNCTATGTCATTGTTTTAAGTTTTAAAGATTGTTCAG
CTTTGATTGTCTATGTTAATTATTTTAAAAACCGATTTATTCTCTCGTTT
TTTTTCAGGAAATCTGTTCATCAAACCACGGCGATATTCAAATACTCTGG
AAGCATTTTAAACGTTTTTTCTTGTTAGACTTCCAAGCGAAACGTATGGT
ACAACCTGTGGAATCTCTTCTGTGGTCTTTTGGGAAAATGGTGCGGATTA
GCATTGCATAGCAGAAAGAATGTAGAGCTCAGTTAACCATAGTTGATTTT
GATGCAGATGATCGTCACTGAAGATTGATGCAGGATACATCAACGACGCC
ACAATGCTTGTGCTTATTTTATACTTGTAAGGAAATAAATAAAGTCTCCG
TCATAAATTTTGAATCCCCCTCAGATCCGCCACTATGTATTGCGCTTACT
TCTATAGCTTTTTTAGACCACTTGCAAAGAATTTTTCATTTGAAAAACCT
CCTTAAAGCAGAAAGTGCACGTTCAAGACGAGCTTTTTCTTATTAAAAGT
ACATAACTCGAAGCTTCCCTGTCTCAAAGCCCCATTCAGTTTTCAATTGG
AATAATTTTATGGATTAATATCTCAAAGTGGTTGAAATTTAGGGATTTTT
AAAAGCGGACAAATTTTAAGTCAAATTTTTAGGTTTGTGACACAGGTGTG
TATTGCCGTGGTCATAGTAAGCCATGGTTGATATTTTTAAAGCAGATTGT
ATCTATCAAAAGCGTCTGTTGGGTGTTTGTTTTATAAATTCTTCTCCCAA
TAAGTTTTGATTAGAAATGGCATCTAAAGTTTTAAAACTTGAAGAAATGA
AATTCTAGTTTTTGGCCTGTTTTATTCAATTCGAACTGTTTTACAAGAAT
AATTTTGATGCACAAAACATCTTTTGGGATACTTTTATTCACCAGGTGTT
AATTTATATATCATCATTACAAGCTCAATATTGACAAAGCTAAGACTTTA
GACCAGCGGCCAAGGTAGTGCTCTGTGTCACTTCGTAGGGCACCCCTTAG
ATCAAGGCAAATTTTTGATATTATGCCCCTAATAGGAAGTCAAATCTCCT
GCAGTTTTCAAGTGAATCGATTTTTATTTCAAGGGTCCTTCTTTACTAAC
GGTTTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048128-exon-scaffold_140-1575043694:188852..189003 | TCONS_00048128-exon-scaffold_140-1575043694:188852..189003 | Clytia hemisphaerica | exon |
| TCONS_00048128-exon-scaffold_140-1575043694:187150..187240 | TCONS_00048128-exon-scaffold_140-1575043694:187150..187240 | Clytia hemisphaerica | exon |
| TCONS_00048128-exon-scaffold_140-1575043694:184345..185395 | TCONS_00048128-exon-scaffold_140-1575043694:184345..185395 | Clytia hemisphaerica | exon |
| TCONS_00048128-exon-scaffold_140-1510915933:188852..189003 | TCONS_00048128-exon-scaffold_140-1510915933:188852..189003 | Clytia hemisphaerica | exon |
| TCONS_00048128-exon-scaffold_140-1510915933:187150..187240 | TCONS_00048128-exon-scaffold_140-1510915933:187150..187240 | Clytia hemisphaerica | exon |
| TCONS_00048128-exon-scaffold_140-1510915933:184345..185395 | TCONS_00048128-exon-scaffold_140-1510915933:184345..185395 | Clytia hemisphaerica | exon |
| TCONS_00048128-exon-scaffold_140-1491911889:188852..189003 | TCONS_00048128-exon-scaffold_140-1491911889:188852..189003 | Clytia hemisphaerica | exon |
| TCONS_00048128-exon-scaffold_140-1491911889:187150..187240 | TCONS_00048128-exon-scaffold_140-1491911889:187150..187240 | Clytia hemisphaerica | exon |
| TCONS_00048128-exon-scaffold_140-1491911889:184345..185395 | TCONS_00048128-exon-scaffold_140-1491911889:184345..185395 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_140 | supercontig | scaffold_140:184345..189003 - |
Blast
The following BLAST results are available for this feature:
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