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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048101 ID=TCONS_00048101|Name=TCONS_00048101|organism=Clytia hemisphaerica|type=transcript|length=342bp
TGTAGACTGTTGAATCGCAattaaataaagagaaaatgaCAAGGAACAAC
CAGTAGCAaaatgtttcgAATAATTGAATATGGAAGATCTTAATGGCGGA
CATAAGAGGCTTCCCTATGGTTTTCGTTCTGGACATTGTTAATCCATTTG
AAATCGCTAACGTTCGATAAATGATGATGGAATGTCAAAAGCAAGGCAAA
CCTGGAGATCTTGGTTACAAATTACGAAGGAAGTTATGGACGCTACAAAT
GCTATGAATGTTGAGAAAGGTGCGACAAGAAACAAATCGAAATCATTTTC
TAGGAAATAAATTTCACCTCGAGAACTAAAATGTCCCCATTT Run BLAST on NCBI transcript from alignment at scaffold_140:100177..101399+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048101 ID=TCONS_00048101|Name=TCONS_00048101|organism=Clytia hemisphaerica|type=transcript|length=1223bp|location=Sequence derived from alignment at scaffold_140:100177..101399+ (Clytia hemisphaerica)
TGTAGACTGTTGAATCGCAattaaataaagagaaaatgaCAAGGAACAAC
CAGTAGCAGTAAGTAAAATTCTACCAAGATCTTTGGGTTGTAAAATCTTT
CCCTTCTTGCCCTTAGAGGTTCTTTTGTACATTATCTATTTTTTGCGAGG
tttacaaaatttaaaacaaaagtcaAAACAAGTCCAGATATGGAGAAAAA
ATCCATAAAAGCAGGCAgaatgtctgaaattttcaagaaataaaGGCTTT
TGAGCAATCATTTCAAACATCCGTCCTACAGCCCCAgtggatttttttct
cacagCGGGGGTCGAAATCTCTATTTAAATCCCAATGGGGGTGTTTAAGA
GCTTGATATtcacattttattttctatttttagaaatgtttcgAATAATT
GAATATGGAAGATCTTAATGGCGGACATAAGAGGCTTCCCTATGGTTTTC
GTTCTGGACATTGTTAATCCATTTGAAATCGCTAACGTTCGATAAATGAT
GATGGAATGTCAAAAGCAAgtacttaaaattaaattttttttcaaaaaat
gtattttgaccgtttttgtCTTTAAAATAGTATGTAGTATAGCATAATGG
TTGGGTTTTGCCATTTGCTTTATTGAGGGTTTAGCCAAGATGGATCGGTG
ATGTATTGTGTAAGTTTTGGCCTCAAATATTGACCAGCCTCCTATAAGTA
TAAGTTTTTGGGGTAAAATTCATCCTTTAAACTTTTAAGTtccaaaccta
aaaatgttctttcttaacctgtttattttcagcatttcttttcatttccc
taaaattgttttagagttaaagagtccacaaagccttataattataaatg
ttcttaatatattGGCCAACGAAGTTTTGTtcaatagtttgttcttataa
aaatagtgTAATAATGGTTGAGTTTTGCCATTTTCTTTGTATCGTCTGGC
GGTCATCTTTCAAAATGACCATTTAAAAAACTATCTGAATTCGAAATGTA
TGTGAAAGGCAACGTGAAAGATttttaatttcacagatttaatttttaat
tttggctttGCTCTCTTCATCATAGGGCAAACCTGGAGATCTTGGTTACA
AATTACGAAGGAAGTTATGGACGCTACAAATGCTATGAATGTTGAGAAAG
GTGCGACAAGAAACAAATCGAAATCATTTTCTAGGAAATAAATTTCACCT
CGAGAACTAAAATGTCCCCATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048101-exon-scaffold_140-1491911889:100177..100234 | TCONS_00048101-exon-scaffold_140-1491911889:100177..100234 | Clytia hemisphaerica | exon |
| TCONS_00048101-exon-scaffold_140-1510915933:100177..100234 | TCONS_00048101-exon-scaffold_140-1510915933:100177..100234 | Clytia hemisphaerica | exon |
| TCONS_00048101-exon-scaffold_140-1575043694:100177..100234 | TCONS_00048101-exon-scaffold_140-1575043694:100177..100234 | Clytia hemisphaerica | exon |
| TCONS_00048101-exon-scaffold_140-1491911889:100560..100695 | TCONS_00048101-exon-scaffold_140-1491911889:100560..100695 | Clytia hemisphaerica | exon |
| TCONS_00048101-exon-scaffold_140-1510915933:100560..100695 | TCONS_00048101-exon-scaffold_140-1510915933:100560..100695 | Clytia hemisphaerica | exon |
| TCONS_00048101-exon-scaffold_140-1575043694:100560..100695 | TCONS_00048101-exon-scaffold_140-1575043694:100560..100695 | Clytia hemisphaerica | exon |
| TCONS_00048101-exon-scaffold_140-1491911889:101252..101399 | TCONS_00048101-exon-scaffold_140-1491911889:101252..101399 | Clytia hemisphaerica | exon |
| TCONS_00048101-exon-scaffold_140-1510915933:101252..101399 | TCONS_00048101-exon-scaffold_140-1510915933:101252..101399 | Clytia hemisphaerica | exon |
| TCONS_00048101-exon-scaffold_140-1575043694:101252..101399 | TCONS_00048101-exon-scaffold_140-1575043694:101252..101399 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_140 | supercontig | scaffold_140:100177..101399 + |
Blast
The following BLAST results are available for this feature:
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