TCONS_00048073 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048073
Unique NameTCONS_00048073
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length463

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048073 ID=TCONS_00048073|Name=TCONS_00048073|organism=Clytia hemisphaerica|type=transcript|length=463bp
GTGTTTTTGTGAAAGACTCTAATGGTAACCCTGTTAAATTCCATCGTTGC
CAAAGGATCCTGAATTGTgaaaacagtacaaaaaactATTCAAAACAGAA
GGATTTGGAAATTTGGTGTCATATGTTCTGACCATTGGAGTTTGTTTCAG
ATCATCTTCTAATGATTTACCAGATTTTATAGTTCCTGAATCCCAATACA
AACTGATCAAGAAAATTAAGTATGAACGAGTAAAGAAGCGTTGGGTTTTT
TATCTGGAATTCTATCAGTTTCAAGAACAATGCTATGGAGAAAATGAGCA
AGCAGTACATAATCGAAACCCCAACAACAACCAGGAGGTTGACCATCAGG
AGATTTCTTTTAATAGTTGCTCACTTAGCTTTGTGTTCtggctttgtttt
ggttttggtctTGGCTTTGTTGAACACTTTACTGACAGCTCGATGTTTAA
TAGCAAATAGGAA
Run BLAST on NCBI

transcript from alignment at scaffold_14:209339..209801

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048073 ID=TCONS_00048073|Name=TCONS_00048073|organism=Clytia hemisphaerica|type=transcript|length=463bp|location=Sequence derived from alignment at scaffold_14:209339..209801 (Clytia hemisphaerica)
TTCCTATTTGCTATTAAACATCGAGCTGTCAGTAAAGTGTTCAACAAAGC
CAagaccaaaaccaaaacaaagccaGAACACAAAGCTAAGTGAGCAACTA
TTAAAAGAAATCTCCTGATGGTCAACCTCCTGGTTGTTGTTGGGGTTTCG
ATTATGTACTGCTTGCTCATTTTCTCCATAGCATTGTTCTTGAAACTGAT
AGAATTCCAGATAAAAAACCCAACGCTTCTTTACTCGTTCATACTTAATT
TTCTTGATCAGTTTGTATTGGGATTCAGGAACTATAAAATCTGGTAAATC
ATTAGAAGATGATCTGAAACAAACTCCAATGGTCAGAACATATGACACCA
AATTTCCAAATCCTTCTGTTTTGAATagttttttgtactgttttcACAAT
TCAGGATCCTTTGGCAACGATGGAATTTAACAGGGTTACCATTAGAGTCT
TTCACAAAAACAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030596XLOC_030596Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048073-exon-scaffold_14-1491911889:209339..209801TCONS_00048073-exon-scaffold_14-1491911889:209339..209801Clytia hemisphaericaexon
TCONS_00048073-exon-scaffold_14-1510915933:209339..209801TCONS_00048073-exon-scaffold_14-1510915933:209339..209801Clytia hemisphaericaexon
TCONS_00048073-exon-scaffold_14-1575043694:209339..209801TCONS_00048073-exon-scaffold_14-1575043694:209339..209801Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:209339..209801 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.295808	1.19583	0.264421	0.629431	2.14109	3.36142	1.33711	1.14838	0.147306	0.710352	0	0.440387	0.830296	1.12227	1.01573	1.33186	1.68171	0.829452	1.19517	2.73631	2.82288	3.13163	2.6446	5.33951	0.374721	0.949969	6.44433	6.21682	4.60504	7.27934
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048073 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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