TCONS_00048054 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048054
Unique NameTCONS_00048054
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length384

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048054 ID=TCONS_00048054|Name=TCONS_00048054|organism=Clytia hemisphaerica|type=transcript|length=384bp
GTGAAGTCGAACACATTGATTGCACACGTTGCATGATGTTGTTCACTTCA
GTGCACTGAGCCTCAATATTACTTGGTTCGAATGCGTCATTGTCTGAATC
TACTATCATTGGAATGTGATTATTTGTTGAGGTTGAAGAAGCTGAACTAG
CAACTGCGTCATGAATTGGTtgtgattcaattgtatttctTGACATGGCA
GCTAAATCTCTCAGCACGCCTGAACACGCTTCTTGGTGATCCGTTCGTGT
AGTACCAAGCATTTTCTCCATGCATTGACGACCTTGCGTGGCGACTATTC
TCGATTGTTTCTTTTTGTAGTGAACCTTTGCAACATCAGAGCTATGTTTT
TGATCCTCTGATATTATCTCCTGTTCGGATCGAG
Run BLAST on NCBI

protein sequence of TCONS_00048054-protein

>TCONS_00048054-protein ID=TCONS_00048054-protein|Name=TCONS_00048054-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
RSEQEIISEDQKHSSDVAKVHYKKKQSRIVATQGRQCMEKMLGTTRTDHQ
EACSGVLRDLAAMSRNTIESQPIHDAVASSASSTSTNNHIPMIVDSDNDA
FEPSNIEAQCTEVNNIMQRVQSMCSTS
Run BLAST on NCBI

transcript from alignment at scaffold_14:23652..24035

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048054 ID=TCONS_00048054|Name=TCONS_00048054|organism=Clytia hemisphaerica|type=transcript|length=384bp|location=Sequence derived from alignment at scaffold_14:23652..24035 (Clytia hemisphaerica)
CTCGATCCGAACAGGAGATAATATCAGAGGATCAAAAACATAGCTCTGAT
GTTGCAAAGGTTCACTACAAAAAGAAACAATCGAGAATAGTCGCCACGCA
AGGTCGTCAATGCATGGAGAAAATGCTTGGTACTACACGAACGGATCACC
AAGAAGCGTGTTCAGGCGTGCTGAGAGATTTAGCTGCCATGTCAagaaat
acaattgaatcacaACCAATTCATGACGCAGTTGCTAGTTCAGCTTCTTC
AACCTCAACAAATAATCACATTCCAATGATAGTAGATTCAGACAATGACG
CATTCGAACCAAGTAATATTGAGGCTCAGTGCACTGAAGTGAACAACATC
ATGCAACGTGTGCAATCAATGTGTTCGACTTCAC

Coding sequence (CDS) from alignment at scaffold_14:23652..24035

>TCONS_00048054 ID=TCONS_00048054|Name=TCONS_00048054|organism=Clytia hemisphaerica|type=CDS|length=381bp|location=Sequence derived from alignment at scaffold_14:23652..24035 (Clytia hemisphaerica)
CGATCCGAACAGGAGATAATATCAGAGGATCAAAAACATAGCTCTGATGT
TGCAAAGGTTCACTACAAAAAGAAACAATCGAGAATAGTCGCCACGCAAG
GTCGTCAATGCATGGAGAAAATGCTTGGTACTACACGAACGGATCACCAA
GAAGCGTGTTCAGGCGTGCTGAGAGATTTAGCTGCCATGTCAagaaatac
aattgaatcacaACCAATTCATGACGCAGTTGCTAGTTCAGCTTCTTCAA
CCTCAACAAATAATCACATTCCAATGATAGTAGATTCAGACAATGACGCA
TTCGAACCAAGTAATATTGAGGCTCAGTGCACTGAAGTGAACAACATCAT
GCAACGTGTGCAATCAATGTGTTCGACTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030577XLOC_030577Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048054-proteinTCONS_00048054-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048054-exon-scaffold_14-1491911889:23652..24035TCONS_00048054-exon-scaffold_14-1491911889:23652..24035Clytia hemisphaericaexon
TCONS_00048054-exon-scaffold_14-1510915933:23652..24035TCONS_00048054-exon-scaffold_14-1510915933:23652..24035Clytia hemisphaericaexon
TCONS_00048054-exon-scaffold_14-1575043694:23652..24035TCONS_00048054-exon-scaffold_14-1575043694:23652..24035Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:23652..24035 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.34643	0.608903	0.0940843	0	0	0	0	0.302033	0	0.966166	0.627111	0.230613	2.36685	0.153213	0.447567	4.87076	0.538475	0	0	0	0.353088	1.70805	1.08104	0.678859	0.435324	0	3.70972	1.78413	30.5497	25.4144
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048054 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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