TCONS_00048052 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048052
Unique NameTCONS_00048052
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2377

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048052 ID=TCONS_00048052|Name=TCONS_00048052|organism=Clytia hemisphaerica|type=transcript|length=2377bp
TTTTTTCTTGTTGCCAGCAATTTGCCGGCAAAAGTGCCCCTTAGGTCAAA
ACCttatctaaaaatagatttttcacAATTGTTGCCGGCAAACTGTCTAC
TGGCTTATTGCCAGCAGCAATTGATGAATTGCCAGACTGAACAAGAGTGT
TGCTGGCAAAATGCCGATGGATTTGCCGGTATCAGCCGGAAAAAAATAAG
TAGTATTTTGAGTTCAGAGTAGTAATTTTTTGGATTAATTGCTAGATGTT
GAAAATGTGGAAGCAGAGAAATCTTAAAATACTTTATAGATATCTGTGGC
AGAGAGGAATTTTTTACATGTTTCGATGCAAAAGCCTATTCAAAGCAAAA
GCCAAATTGTATATTTTATAATTTGCTGTTCGCATTAATTCAAATTAAAT
GCCTCCAGGCTGTTCCAGGTTCAATGCTGGCcgaattgccatcccatgtt
ttgtcagatatttCCAAGTTAGAACCGTTGATGGTAGATggcattagaac
aataaaagatttcataattcaaaaagaaaaactttcaaaatatccAAAGC
CTTTTaagaatttgttcttaaagacagcAAATTCTGTTTTGAGGCTATTA
ACAATTCCACAAAGGAGGTGAAGTACTCAggccaaactttcaaaacaccc
aaattgaaagcagtaattatgacatCATACCTTCTTTCCCTgtgcaagaa
aatattaaacCCCCATTTGGATATATGGCGTTTAGCTCACCCTGTTAGTA
AAAACAAGTATTTTGCcgctttaaaaatttgaataatcgaAAAAAAATGA
CTTAACAGTATGAAGATGAGCTGAATTAAGAGCCTTTTAAAGTTGCAGAG
CCTGGACTTAAACTTATTCAAATGAAGGTGAATGTATTATGCATTCTGTA
TTTAATTGAAAGGGCAGCTGACATTGAAAAATGAGGTTAagtatattttt
taatgaacCTGGTAAATCACGCATTTTAGTGCTTTAGTGCCTTGCATGAA
GAAATTAGTTGCCTCTGGTGCATGATTTAACTTATTTATacctaagggaa
gaaattttcacgggAATCCAATTTTGCGGTTCatcaatattaaaaatttt
tgcaggaattaaatttcgctgcTCACTGCAATCTTTGATTTGTTATTTga
atacacattgttttttttttaataagaaacacctttataaggaacttgag
gctgaaatttgactATGAATCTTATCTTATCACAAACTATATATACATCT
ATTCGAAATATTGAACAAACAGAATGAAAAAGGACATTAAAAGAAgcatt
ttttgggtatttttagGGATAGGGTGACTATATTTTCTATGAAGCTGGAC
TtgtttgttggtttgccgttgccgaccctagattttggaggagGGTTGGC
CAGTTGGAAATTCTTTTTATTATTACAATTTTGTATGGAGATAATCAACA
ACATTTAAgtaattttgaaaggaaaacgGAAGAGCTAGAAGGGAATTCAC
TTTTCTTAAGCTTAAGATAGAATGAGACGGACAAAATACAGGTTGTGCTT
TGAAGgtttgacatttttgaagaaaaaaatttctcttctttaaaatagca
ataaatttttttggattgGCAGATTTTGAGGTAAGGTCGGTTGGGTGATG
GCAATAAGTCCAGCCTGAAAAGTGCTTAGTAATCTAGGGACTATGAAATT
TCGCCGTTCACTGattatgaaaaattttgtggttcacctattttgaaaaa
tttcgcagGAAGTTAACTTTGCAGATTGCCGATTTTGTAAATCTCTGTGa
gaactttatttatttttattcagcatacattttcatatttttcatagcTT
CTCACTCACAGTCACCACGACAATCGCCGAACTGTGCACGAAATAATGgc
gctatgaaaaaaaaacatGCAAACTTCATTGTTCCTGAAACCAATGATCA
ACGACCTTCGACACAGAAAAAATGCCACTCAAAATATGGAGATGGCGGAA
AGGACTTCAAAGAAATGTCGAATAAACaatatcaATATTCCGTCATGATG
GAGTTGCAAGTTTTGAAACGAAATCAAAACAGAATTCTCGCCATCCTGGA
AAACCAAGAAACAAGCACTTCAGAACAGACACTTGAGCCACCAGAACCAT
TGGATACGATGGAAGAATTCGATATCGAGGAAGAAAAACTCAAAGCACAC
GATAAGAGAGTGATAAAGCGAAAAATGATCAAGCAAATAGGTGGCAAAGA
CATCCGTCAAGCAATCCGCTTAGCACTCGACAGCATGATGTCGAGAAGAC
TACAAAGCAAGTTTTCAAAGTCGGGCttgcagaaaaaaagaaaatttaaa
ggcACTTATCATTATAAATGCTTAGAG
Run BLAST on NCBI

transcript from alignment at scaffold_14:847510..850656-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048052 ID=TCONS_00048052|Name=TCONS_00048052|organism=Clytia hemisphaerica|type=transcript|length=3147bp|location=Sequence derived from alignment at scaffold_14:847510..850656- (Clytia hemisphaerica)
TTTTTTCTTGTTGCCAGCAATTTGCCGGCAAAAGTGCCCCTTAGGTCAAA
ACCTTATCTAAAAATAGATTTTTCACAATTGTTGCCGGCAAACTGTCTAC
TGGCTTATTGCCAGCAGCAATTGATGAATTGCCAGACTGAACAAGAGTGT
TGCTGGCAAAATGCCGATGGATTTGCCGGTATCAGCCGGAAAAAAATAAG
TAGTATTTTGAGTTCAGAGTAGTAATTTTTTGGATTAATTGCTAGATGTT
GAAAATGTGGAAGCAGAGAAATCTTAAAATACTTTATAGATATCTGTGGC
AGAGAGGAATTTTTTACATGTTTCGATGCAAAAGCCTATTCAAAGCAAAA
GCCAAATTGTATATTTTATAATTTGCTGTTCGCATTAATTCAAATTAAAT
GCCTCCAGGCTGTTCCAGGTTCAATGCTGGCCGAATTGCCATCCCATGTT
TTGTCAGATATTTCCAAGTTAGAACCGTTGATGGTAGATGGCATTAGAAC
AATAAAAGATTTCATAATTCAAAAAGAAAAACTTTCAAAATATCCAAAGC
CTTTTAAGAATTTGTTCTTAAAGACAGCAAATTCTGTTTTGAGGCTATTA
ACAATTCCACAAAGGAGGTGAAGTACTCAGGCCAAACTTTCAAAACACCC
AAATTGAAAGCAGTAATTATGACATCATACCTTCTTTCCCTGTGCAAGAA
AATATTAAACCCCCATTTGGATATATGGCGTTTAGCTCACCCTGTTAGTA
AAAACAAGTATTTTGCCGCTTTAAAAATTTGAATAATCGAAAAAAAATGA
CTTAACAGTATGAAGATGAGCTGAATTAAGAGCCTTTTAAAGTTGCAGAG
CCTGGACTTAAACTTATTCAAATGAAGGTGAATGTATTATGCATTCTGTA
TTTAATTGAAAGGGCAGCTGACATTGAAAAATGAGGTTAAGTATATTTTT
TAATGAACCTGGTAAATCACGCATTTTAGTGCTTTAGTGCCTTGCATGAA
GAAATTAGTTGCCTCTGGTGCATGATTTAACTTATTTATACCTAAGGGAA
GAAATTTTCACGGGAATCCAATTTTGCGGTTCATCAATATTAAAAATTTT
TGCAGGAATTAAATTTCGCTGCTCACTGCAATCTTTGATTTGTTATTTGA
ATACACATTGTTTTTTTTTTAATAAGAAACACCTTTATAAGGAACTTGAG
GCTGAAATTTGACTATGAATCTTATCTTATCACAAACTATATATACATCT
ATTCGAAATATTGAACAAACAGAATGAAAAAGGACATTAAAAGAAGCATT
TTTTGGGTATTTTTAGGGATAGGGTGACTATATTTTCTATGAAGCTGGAC
TTGTTTGTTGGTTTGCCGTTGCCGACCCTAGATTTTGGAGGAGGGTTGGC
CAGTTGGAAATTCTTTTTATTATTACAATTTTGTATGGAGATAATCAACA
ACATTTAAGTAATTTTGAAAGGAAAACGGAAGAGCTAGAAGGGAATTCAC
TTTTCTTAAGCTTAAGATAGAATGAGACGGACAAAATACAGGTTGTGCTT
TGAAGGTTTGACATTTTTGAAGAAAAAAATTTCTCTTCTTTAAAATAGCA
ATAAATTTTTTTGGATTGGCAGATTTTGAGGTAAGGTCGGTTGGGTGATG
GCAATAAGTCCAGCCTGAAAAGTGCTTAGTAATCTAGGGACTATGAAATT
TCGCCGTTCACTGATTATGAAAAATTTTGTGGTTCACCTATTTTGAAAAA
TTTCGCAGGAAGTTAACTTTGCAGATTGCCGATTTTGTAAATCTCTGTGA
GAACTTTATTTATTTTTATTCAGCATACATTTTCATATTTTTCATAGCTT
CTCACTCACAGTCACCACGACAATCGCCGAACTGTGCACGAAATAATGGC
GCTATGAAAAAAAAACGTAAAAAAAATATATTTTTTTTTATTAGCAATTT
CAGTACCGAATATTTTCAAAGCAGCCCTGTTCAGAAAGCTCGAGCTTATC
CTAGTTTGTTTTTTTTTTACTTTTAGATGCAAACTTCATTGTTCCTGAAA
CCAATGATCAACGACCTTGTAAGTCTTTTTTAAATTAAGCACAGATGATT
TTTTTGTTTTTTTCTTGTGAGTGAAGAATTCTTTTGCCTTGATCAATGCT
TCCTGATTTTTTTTTACTTTCTGGGAAGGACTTGACAGATATTTTGTTGA
GATAGAGAAACATACTATACTATTTTTTTAATTTCTTTTTGCAGCGACAC
AGAAAAAATGCCACTCAAAATATGGAGATGGCGGAAAGGACTTCAAAGAA
ATGTCGAATAAACGTAAGTTTTCAAGCTCAATATTACATTCTTGTTTTGT
ACAAAGAAATAAAGTCCATTCGCTTTGAGTATGCACTCGTTTTTTCTACC
ACGTGGGAAACAATCTCAAAGGAAGTAAGTCTAATTACGATGACACGGTT
TCTACATGGTAGCTAAAACGAGTGCACACTTAAAGCGAATGTACTCTAGT
TTGGTTGGATTTACATAAAAGCAAGAGTATAGAGTATAGTCATTCATGCG
GGCTCCAGACATTCGGTAAGAAAATGAGCAAGAGTGTAACCCACCCTTTG
TTTCCATATCACATCAGACTAATTATTACACTTTTTTTTCAGAATATCAA
TATTCCGTCATGATGGAGTTGCAAGTTTTGAAACGAAATCAAAACAGAAT
TCTCGCCATCCTGGAAAACCAAGAAACAAGCACTTCAGAACAGACACTTG
AGCCACCAGAACCATTGGATACGATGGAAGAATTCGATATCGAGGAAGAA
AAACTCAAAGCACACGATAAGAGAGTGATAAAGGTAAAAATAATCAATAC
TTTTTATATACCTTTTCAATACCTCGATCTTCTTTTTACCCGACAACTTC
ACGCTTCACAGTAGGCCCTCGTGAAATTTTTTTATTTCTTGTGAAAATAT
ATAGTAATTAATGTATTATTTTGAATTTTATCTTGTAGCGAAAAATGATC
AAGCAAATAGGTGGCAAAGACATCCGTCAAGCAATCCGCTTAGCACTCGA
CAGCATGATGTCGAGAAGACTACAAAGCAAGTTTTCAAAGTCGGGCTTGC
AGAAAAAAAGAAAATTTAAAGGCACTTATCATTATAAATGCTTAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030576XLOC_030576Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048052-exon-scaffold_14-1575043694:848741..850656TCONS_00048052-exon-scaffold_14-1575043694:848741..850656Clytia hemisphaericaexon
TCONS_00048052-exon-scaffold_14-1575043694:848589..848630TCONS_00048052-exon-scaffold_14-1575043694:848589..848630Clytia hemisphaericaexon
TCONS_00048052-exon-scaffold_14-1575043694:848344..848412TCONS_00048052-exon-scaffold_14-1575043694:848344..848412Clytia hemisphaericaexon
TCONS_00048052-exon-scaffold_14-1575043694:847824..848014TCONS_00048052-exon-scaffold_14-1575043694:847824..848014Clytia hemisphaericaexon
TCONS_00048052-exon-scaffold_14-1575043694:847510..847668TCONS_00048052-exon-scaffold_14-1575043694:847510..847668Clytia hemisphaericaexon
TCONS_00048052-exon-scaffold_14-1510915933:848741..850656TCONS_00048052-exon-scaffold_14-1510915933:848741..850656Clytia hemisphaericaexon
TCONS_00048052-exon-scaffold_14-1510915933:848589..848630TCONS_00048052-exon-scaffold_14-1510915933:848589..848630Clytia hemisphaericaexon
TCONS_00048052-exon-scaffold_14-1510915933:848344..848412TCONS_00048052-exon-scaffold_14-1510915933:848344..848412Clytia hemisphaericaexon
TCONS_00048052-exon-scaffold_14-1510915933:847824..848014TCONS_00048052-exon-scaffold_14-1510915933:847824..848014Clytia hemisphaericaexon
TCONS_00048052-exon-scaffold_14-1510915933:847510..847668TCONS_00048052-exon-scaffold_14-1510915933:847510..847668Clytia hemisphaericaexon
TCONS_00048052-exon-scaffold_14-1491911889:848741..850656TCONS_00048052-exon-scaffold_14-1491911889:848741..850656Clytia hemisphaericaexon
TCONS_00048052-exon-scaffold_14-1491911889:848589..848630TCONS_00048052-exon-scaffold_14-1491911889:848589..848630Clytia hemisphaericaexon
TCONS_00048052-exon-scaffold_14-1491911889:848344..848412TCONS_00048052-exon-scaffold_14-1491911889:848344..848412Clytia hemisphaericaexon
TCONS_00048052-exon-scaffold_14-1491911889:847824..848014TCONS_00048052-exon-scaffold_14-1491911889:847824..848014Clytia hemisphaericaexon
TCONS_00048052-exon-scaffold_14-1491911889:847510..847668TCONS_00048052-exon-scaffold_14-1491911889:847510..847668Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:847510..850656 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.14694	0.647376	1.64913	1.60695	2.08058	0.870422	2.059	2.55188	2.01415	2.1346	0	0	0	0	0	0	0	0	0	0	3.69073	3.68076	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048052 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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