TCONS_00048024 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048024
Unique NameTCONS_00048024
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length836

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048024 ID=TCONS_00048024|Name=TCONS_00048024|organism=Clytia hemisphaerica|type=transcript|length=836bp
AAAAAGAAATGTACCATGGATGATAGTGATGATGACGACGATGTAATCCC
ACCGACTCCTCCACCATCGCCATCAAAATTCAAGTCATCAAActtcaaaa
ctaaaaatgaacATTCAAGTAAAgagacACTTTCCAAAAATGACCCCATT
CCCTACGTCCCAGACTTCAAAATTGAATGGTGCGAAGTTGAAGGAGTGAC
AGAACTTTTCGAAAATAAGTTGGATGAAATTGAACTTGTTCAACTGGAGG
ATCAAGGTCAAAGCCTACCAGTTTCACTGTTAGAGGAAAAAGTTGAACTT
AATGTCGATTACTCAGTACACAAAGAGGTGGCAAAAGTGATGGATGTGGA
AAGGCGGGAGGAATGCATGGACAAGCAGGAGAAAGGTGTTGACAAGCAGG
AGAAAGGTGTTGACAAGCAGGAGGAATGCACGGACAAGCAGGAGGAATAC
ACAGACAAGCAGGAGAAATGTGTGGACAAGCAGGAAGAATGCGTGGAAAA
GCAAGGGAAATGTGTTGACAAGCAGGAGGAATGCGTGGACCAGCAGGAGA
AAGGTGTGGAAAAGCAGGAAGAATGCGTGGACAAGCAGGAGAAAGTTTTG
GACCAGCAGGAGAAAGGTGTGGAAAAGCAGGAGAAAGTTTTGGACCAGCA
GGAGAAAGTTTTGACGTCCACCACTGTGGTTTTTAAGGTGTTCCCATCTT
TTTTGGGTAGAAACTGTGCAAAGTTTCATCTTAAAAATTTTCGACTCAAA
ATGCTCCTAACAATTGCTGCACGGTCTTTCATGCTTCTGCAATCATCAGG
CAATAGATCTTGTTCTAAATCTTAtctcaattcatg
Run BLAST on NCBI

protein sequence of TCONS_00048024-protein

>TCONS_00048024-protein ID=TCONS_00048024-protein|Name=TCONS_00048024-protein|organism=Clytia hemisphaerica|type=polypeptide|length=278bp
KKKCTMDDSDDDDDVIPPTPPPSPSKFKSSNFKTKNEHSSKETLSKNDPI
PYVPDFKIEWCEVEGVTELFENKLDEIELVQLEDQGQSLPVSLLEEKVEL
NVDYSVHKEVAKVMDVERREECMDKQEKGVDKQEKGVDKQEECTDKQEEY
TDKQEKCVDKQEECVEKQGKCVDKQEECVDQQEKGVEKQEECVDKQEKVL
DQQEKGVEKQEKVLDQQEKVLTSTTVVFKVFPSFLGRNCAKFHLKNFRLK
MLLTIAARSFMLLQSSGNRSCSKSYLNS
Run BLAST on NCBI

transcript from alignment at scaffold_14:50336..52238-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048024 ID=TCONS_00048024|Name=TCONS_00048024|organism=Clytia hemisphaerica|type=transcript|length=1903bp|location=Sequence derived from alignment at scaffold_14:50336..52238- (Clytia hemisphaerica)
AAAAAGAAATGTACCATGGATGATAGTGATGATGACGACGATGTAATCCC
ACCGACTCCTCCACCATCGTAAGCTGACATAGAAAATTAACTAATTATCA
AAATGACTGGATTATGACTTATTAATGTTATTACCTTCAAAACAATCGTA
CTTGCATGCATGTGGTTAATTTTTTTCATTAAATTAAATTTCTTTTTGAA
TTCATTCAGGCCATCAAAATTCAAGTCATCAAACTTCAAAACTAAAAATG
AACATTCAAGTAAAGTAAGAACACCTTTCATTATCCCTGATCCACCCTGC
CGTTTCTTGTTGAGTAGGAAAAGAAAGAGACACATTGTGTCAAATTTGAA
CTAGTCATTAAAAAAAAGGAATAGACATTTTAAGGATTAGACATTTTAAG
GATTAGACATTTTAAGGATTGATTGAAATTCCCCATGTGATTTTTTTCCA
GGAGACACTTTCCAAAAATGACCCCATTCCCTACGTCCCAGACTTCAAAA
TTGAATGGTGCGAAGTTGAAGGAGTGACAGAACTTTTCGAAAATAAGGTA
CACTATTTTTGAAAACTTTTTTCCTAACGCTTCCAAGTGATTGTTTGCAA
TGCAAGTGGCAAGTGGTATTCAAAACCTAACTCTTTTTCAAACTTCCTAT
AGTTGGATGAAATTGAACTTGTTCAACTGGAGGATCAAGGTCAAAGCCTA
CCAGTTTCACTGTTAGAGGTAAATATACTTTTGACGAATCAGTTTTTCTA
TTCCCACGTTATTGGGATGGAACACCCCTTATAAAATGGTTGTTTTACCA
AAACTTAAAAATCAAACTGGGTTCAACCGCCATCTCGAGAGTGTTGGCTA
CTTGTATTGAGTATTAGCTTGATAAATTTATTCCTGCTAATCGAACTCTT
AAAATTCAAATCCATTCTGCCTCGCATATCTATAGTCATAACGTAACGCT
GTCACTCCTACAATTTTATTGCTACTATAAACAATTTACCTGCTATTATA
ACCCGTGATAATTAACCCAGTTGAATCAAGTATTCAGTCTTACGGTATAA
CCCTCCAGACTTTCCAAGTATATCACTGGATAGAGAAATTATATTCAACT
TATCCATGGTAAAGTTCAGATATTTCAATGCTAGTAAAATATCTTTATTA
ATGTAATGGATAAATTTCAAAGGTATCGCAAATCGCCCTTCATTTTTGAA
CTCTTATTTATTTACGGCAAAATGGCCAGTTCTTTCAAACAACAAAAGAA
TAAACCTTTGCGAGTCAGATTTTTATGAAACTAGATTTTGTTAGTTTGAC
CAAAATCACGAGTTTGTAGAACCCCTTAAGTAGTATTTGTTTCAATTTCT
AGGAAAAAGTTGAACTTAATGTCGATTACTCAGTACACAAAGAGGTGGCA
AAAGTGATGGATGTGGAAAGGCGGGAGGAATGCATGGACAAGCAGGAGAA
AGGTGTTGACAAGCAGGAGAAAGGTGTTGACAAGCAGGAGGAATGCACGG
ACAAGCAGGAGGAATACACAGACAAGCAGGAGAAATGTGTGGACAAGCAG
GAAGAATGCGTGGAAAAGCAAGGGAAATGTGTTGACAAGCAGGAGGAATG
CGTGGACCAGCAGGAGAAAGGTGTGGAAAAGCAGGAAGAATGCGTGGACA
AGCAGGAGAAAGTTTTGGACCAGCAGGAGAAAGGTGTGGAAAAGCAGGAG
AAAGTTTTGGACCAGCAGGAGAAAGTTTTGACGTCCACCACTGTGGTTTT
TAAGGTGTTCCCATCTTTTTTGGGTAGAAACTGTGCAAAGTTTCATCTTA
AAAATTTTCGACTCAAAATGCTCCTAACAATTGCTGCACGGTCTTTCATG
CTTCTGCAATCATCAGGCAATAGATCTTGTTCTAAATCTTATCTCAATTC
ATG

Coding sequence (CDS) from alignment at scaffold_14:50336..52238-

>TCONS_00048024 ID=TCONS_00048024|Name=TCONS_00048024|organism=Clytia hemisphaerica|type=CDS|length=4170bp|location=Sequence derived from alignment at scaffold_14:50336..52238- (Clytia hemisphaerica)
GAAAAAGTTGAACTTAATGTCGATTACTCAGTACACAAAGAGGTGGCAAA
AGTGATGGATGTGGAAAGGCGGGAGGAATGCATGGACAAGCAGGAGAAAG
GTGTTGACAAGCAGGAGAAAGGTGTTGACAAGCAGGAGGAATGCACGGAC
AAGCAGGAGGAATACACAGACAAGCAGGAGAAATGTGTGGACAAGCAGGA
AGAATGCGTGGAAAAGCAAGGGAAATGTGTTGACAAGCAGGAGGAATGCG
TGGACCAGCAGGAGAAAGGTGTGGAAAAGCAGGAAGAATGCGTGGACAAG
CAGGAGAAAGTTTTGGACCAGCAGGAGAAAGGTGTGGAAAAGCAGGAGAA
AGTTTTGGACCAGCAGGAGAAAGTTTTGACGTCCACCACTGTGGTTTTTA
AGGTGTTCCCATCTTTTTTGGGTAGAAACTGTGCAAAGTTTCATCTTAAA
AATTTTCGACTCAAAATGCTCCTAACAATTGCTGCACGGTCTTTCATGCT
TCTGCAATCATCAGGCAATAGATCTTGTTCTAAATCTTATCTCAATTCAT
TGGATGAAATTGAACTTGTTCAACTGGAGGATCAAGGTCAAAGCCTACCA
GTTTCACTGTTAGAGGAGACACTTTCCAAAAATGACCCCATTCCCTACGT
CCCAGACTTCAAAATTGAATGGTGCGAAGTTGAAGGAGTGACAGAACTTT
TCGAAAATAAGGCCATCAAAATTCAAGTCATCAAACTTCAAAACTAAAAA
TGAACATTCAAGTAAAAAAAAGAAATGTACCATGGATGATAGTGATGATG
ACGACGATGTAATCCCACCGACTCCTCCACCATCGAAAAAGTTGAACTTA
ATGTCGATTACTCAGTACACAAAGAGGTGGCAAAAGTGATGGATGTGGAA
AGGCGGGAGGAATGCATGGACAAGCAGGAGAAAGGTGTTGACAAGCAGGA
GAAAGGTGTTGACAAGCAGGAGGAATGCACGGACAAGCAGGAGGAATACA
CAGACAAGCAGGAGAAATGTGTGGACAAGCAGGAAGAATGCGTGGAAAAG
CAAGGGAAATGTGTTGACAAGCAGGAGGAATGCGTGGACCAGCAGGAGAA
AGGTGTGGAAAAGCAGGAAGAATGCGTGGACAAGCAGGAGAAAGTTTTGG
ACCAGCAGGAGAAAGGTGTGGAAAAGCAGGAGAAAGTTTTGGACCAGCAG
GAGAAAGTTTTGACGTCCACCACTGTGGTTTTTAAGGTGTTCCCATCTTT
TTTGGGTAGAAACTGTGCAAAGTTTCATCTTAAAAATTTTCGACTCAAAA
TGCTCCTAACAATTGCTGCACGGTCTTTCATGCTTCTGCAATCATCAGGC
AATAGATCTTGTTCTAAATCTTATCTCAATTCATTGGATGAAATTGAACT
TGTTCAACTGGAGGATCAAGGTCAAAGCCTACCAGTTTCACTGTTAGAGG
AGACACTTTCCAAAAATGACCCCATTCCCTACGTCCCAGACTTCAAAATT
GAATGGTGCGAAGTTGAAGGAGTGACAGAACTTTTCGAAAATAAGGCCAT
CAAAATTCAAGTCATCAAACTTCAAAACTAAAAATGAACATTCAAGTAAA
AAAAAGAAATGTACCATGGATGATAGTGATGATGACGACGATGTAATCCC
ACCGACTCCTCCACCATCGAAAAAGTTGAACTTAATGTCGATTACTCAGT
ACACAAAGAGGTGGCAAAAGTGATGGATGTGGAAAGGCGGGAGGAATGCA
TGGACAAGCAGGAGAAAGGTGTTGACAAGCAGGAGAAAGGTGTTGACAAG
CAGGAGGAATGCACGGACAAGCAGGAGGAATACACAGACAAGCAGGAGAA
ATGTGTGGACAAGCAGGAAGAATGCGTGGAAAAGCAAGGGAAATGTGTTG
ACAAGCAGGAGGAATGCGTGGACCAGCAGGAGAAAGGTGTGGAAAAGCAG
GAAGAATGCGTGGACAAGCAGGAGAAAGTTTTGGACCAGCAGGAGAAAGG
TGTGGAAAAGCAGGAGAAAGTTTTGGACCAGCAGGAGAAAGTTTTGACGT
CCACCACTGTGGTTTTTAAGGTGTTCCCATCTTTTTTGGGTAGAAACTGT
GCAAAGTTTCATCTTAAAAATTTTCGACTCAAAATGCTCCTAACAATTGC
TGCACGGTCTTTCATGCTTCTGCAATCATCAGGCAATAGATCTTGTTCTA
AATCTTATCTCAATTCATTGGATGAAATTGAACTTGTTCAACTGGAGGAT
CAAGGTCAAAGCCTACCAGTTTCACTGTTAGAGGAGACACTTTCCAAAAA
TGACCCCATTCCCTACGTCCCAGACTTCAAAATTGAATGGTGCGAAGTTG
AAGGAGTGACAGAACTTTTCGAAAATAAGGCCATCAAAATTCAAGTCATC
AAACTTCAAAACTAAAAATGAACATTCAAGTAAAAAAAAGAAATGTACCA
TGGATGATAGTGATGATGACGACGATGTAATCCCACCGACTCCTCCACCA
TCGAAAAAGTTGAACTTAATGTCGATTACTCAGTACACAAAGAGGTGGCA
AAAGTGATGGATGTGGAAAGGCGGGAGGAATGCATGGACAAGCAGGAGAA
AGGTGTTGACAAGCAGGAGAAAGGTGTTGACAAGCAGGAGGAATGCACGG
ACAAGCAGGAGGAATACACAGACAAGCAGGAGAAATGTGTGGACAAGCAG
GAAGAATGCGTGGAAAAGCAAGGGAAATGTGTTGACAAGCAGGAGGAATG
CGTGGACCAGCAGGAGAAAGGTGTGGAAAAGCAGGAAGAATGCGTGGACA
AGCAGGAGAAAGTTTTGGACCAGCAGGAGAAAGGTGTGGAAAAGCAGGAG
AAAGTTTTGGACCAGCAGGAGAAAGTTTTGACGTCCACCACTGTGGTTTT
TAAGGTGTTCCCATCTTTTTTGGGTAGAAACTGTGCAAAGTTTCATCTTA
AAAATTTTCGACTCAAAATGCTCCTAACAATTGCTGCACGGTCTTTCATG
CTTCTGCAATCATCAGGCAATAGATCTTGTTCTAAATCTTATCTCAATTC
ATTGGATGAAATTGAACTTGTTCAACTGGAGGATCAAGGTCAAAGCCTAC
CAGTTTCACTGTTAGAGGAGACACTTTCCAAAAATGACCCCATTCCCTAC
GTCCCAGACTTCAAAATTGAATGGTGCGAAGTTGAAGGAGTGACAGAACT
TTTCGAAAATAAGGCCATCAAAATTCAAGTCATCAAACTTCAAAACTAAA
AATGAACATTCAAGTAAAAAAAAGAAATGTACCATGGATGATAGTGATGA
TGACGACGATGTAATCCCACCGACTCCTCCACCATCGAAAAAGTTGAACT
TAATGTCGATTACTCAGTACACAAAGAGGTGGCAAAAGTGATGGATGTGG
AAAGGCGGGAGGAATGCATGGACAAGCAGGAGAAAGGTGTTGACAAGCAG
GAGAAAGGTGTTGACAAGCAGGAGGAATGCACGGACAAGCAGGAGGAATA
CACAGACAAGCAGGAGAAATGTGTGGACAAGCAGGAAGAATGCGTGGAAA
AGCAAGGGAAATGTGTTGACAAGCAGGAGGAATGCGTGGACCAGCAGGAG
AAAGGTGTGGAAAAGCAGGAAGAATGCGTGGACAAGCAGGAGAAAGTTTT
GGACCAGCAGGAGAAAGGTGTGGAAAAGCAGGAGAAAGTTTTGGACCAGC
AGGAGAAAGTTTTGACGTCCACCACTGTGGTTTTTAAGGTGTTCCCATCT
TTTTTGGGTAGAAACTGTGCAAAGTTTCATCTTAAAAATTTTCGACTCAA
AATGCTCCTAACAATTGCTGCACGGTCTTTCATGCTTCTGCAATCATCAG
GCAATAGATCTTGTTCTAAATCTTATCTCAATTCATTGGATGAAATTGAA
CTTGTTCAACTGGAGGATCAAGGTCAAAGCCTACCAGTTTCACTGTTAGA
GGAGACACTTTCCAAAAATGACCCCATTCCCTACGTCCCAGACTTCAAAA
TTGAATGGTGCGAAGTTGAAGGAGTGACAGAACTTTTCGAAAATAAGGCC
ATCAAAATTCAAGTCATCAAACTTCAAAACTAAAAATGAACATTCAAGTA
AAAAAAAGAAATGTACCATGGATGATAGTGATGATGACGACGATGTAATC
CCACCGACTCCTCCACCATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030556XLOC_030556Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048024-proteinTCONS_00048024-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048024-exon-scaffold_14-1575043694:52171..52238TCONS_00048024-exon-scaffold_14-1575043694:52171..52238Clytia hemisphaericaexon
TCONS_00048024-exon-scaffold_14-1575043694:51975..52029TCONS_00048024-exon-scaffold_14-1575043694:51975..52029Clytia hemisphaericaexon
TCONS_00048024-exon-scaffold_14-1575043694:51692..51787TCONS_00048024-exon-scaffold_14-1575043694:51692..51787Clytia hemisphaericaexon
TCONS_00048024-exon-scaffold_14-1575043694:51521..51586TCONS_00048024-exon-scaffold_14-1575043694:51521..51586Clytia hemisphaericaexon
TCONS_00048024-exon-scaffold_14-1575043694:50336..50886TCONS_00048024-exon-scaffold_14-1575043694:50336..50886Clytia hemisphaericaexon
TCONS_00048024-exon-scaffold_14-1510915933:52171..52238TCONS_00048024-exon-scaffold_14-1510915933:52171..52238Clytia hemisphaericaexon
TCONS_00048024-exon-scaffold_14-1510915933:51975..52029TCONS_00048024-exon-scaffold_14-1510915933:51975..52029Clytia hemisphaericaexon
TCONS_00048024-exon-scaffold_14-1510915933:51692..51787TCONS_00048024-exon-scaffold_14-1510915933:51692..51787Clytia hemisphaericaexon
TCONS_00048024-exon-scaffold_14-1510915933:51521..51586TCONS_00048024-exon-scaffold_14-1510915933:51521..51586Clytia hemisphaericaexon
TCONS_00048024-exon-scaffold_14-1510915933:50336..50886TCONS_00048024-exon-scaffold_14-1510915933:50336..50886Clytia hemisphaericaexon
TCONS_00048024-exon-scaffold_14-1491911889:52171..52238TCONS_00048024-exon-scaffold_14-1491911889:52171..52238Clytia hemisphaericaexon
TCONS_00048024-exon-scaffold_14-1491911889:51975..52029TCONS_00048024-exon-scaffold_14-1491911889:51975..52029Clytia hemisphaericaexon
TCONS_00048024-exon-scaffold_14-1491911889:51692..51787TCONS_00048024-exon-scaffold_14-1491911889:51692..51787Clytia hemisphaericaexon
TCONS_00048024-exon-scaffold_14-1491911889:51521..51586TCONS_00048024-exon-scaffold_14-1491911889:51521..51586Clytia hemisphaericaexon
TCONS_00048024-exon-scaffold_14-1491911889:50336..50886TCONS_00048024-exon-scaffold_14-1491911889:50336..50886Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:50336..52238 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.113167	0.220711	0.256266	0.0626791	0.763058	1.02506	0.436481	0.340523	0.190727	0.295307	0	0.339158	0.0376318	0.234486	0.385559	0.103441	0.212384	0.304762	0.120299	0.188826	0.054708	0.320216	0.194632	0.176949	0.303755	0.542188	0	0.0828029	0.125606	0.255946
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048024 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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