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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048002 ID=TCONS_00048002|Name=TCONS_00048002|organism=Clytia hemisphaerica|type=transcript|length=1384bp CGAAGAATATCAATCCATTAAAATGCACCAAACGAACATCATTGTATGAA CAAATATTGACAAATGCAAAATCCACCATAGACAAACAAAACCGAAAGTT CAACCTCGGGAATGGCCAGTTACTTAACGACCCTATTCTTGCCGCTGATC AGCTTCTCTTTAGAGagtatgctgattcagcattatTCAACACCAACCGC CACGATCCTGTATTTATTCCCCCAGTTTTTCAATCACACCAATACGCGAA GAAGGATTCAACCGTGCATATCCTTGATTACGATGTTGACATAAACACTC TCAAGAAATGTTTGGATAATTTGAAGAAGGATTCGCCAGCCTTTTGGTTC ACACGTGAGCTCCAATCCTTCCATTGTCGCCACTGGTTAACAAAGGCACT TCAAGCTTTCTCTGAATTGCAGGAAAACAACACTGACAAAGAGATCAACG GAAAAGAATTCAGCAATTGGATTCTCAATGTAAAGATCAAGTATCTAATT GTAAAAGAGTTGGCGACAGTCAATATGACTCTACCATCAACAACTGAGGA CAAAAACACATTCATCGAAGCATGTATTCAGGAATTGGCTTCAAAATCAC CAGGATCAAAACTGgaacaaactctcaaaaagACGTTAAAAGATGTTAAA AAAGAAGTCGAAAACTTGGTCAAACAAAACCCACCATCCCATCCAACAAT AAAATGGCTTTTCGGATTAGTTCTATCGGAGCTCGGTGAAAAAGGTGAAc actctttttttgaaaaactctaTTCCATCAAAGACGACCCTGTTCTTCAA GATACTGTGATTCTCAGTTCCATCAATTTCCTCACCAATGTCCAAAAGAA AATGCATCAGGAGATTGACGTCCTTATTTTCTCGTGGACCAAGAAATTAA TCATAGGCGTAGAAATCAAACGGACACTGACTATAAAAGCTTTTGACCAG TTGGATAAATACCATAAATTGATAGAGGAGAGGTTGAGTGATCAATTGGG ACATGGCTGGACGTACCATCCAGCCATTTTGGTTGAAAAGGACGACCTTT CTTTTAACAATCAACATTACATTGACCAAGAAACAGATTTGAAATGTTGG TTATCCATCTTGTTTGCGAAATTTCCGACCGTTCCCTCTGGAATACCTTT CATCCCAGCAGTAAATCAAGTTAAAGACCTCCTGAGAATCGTTGTGTTTG CCATTCATGCTTCAAAAACAGCACCCATTACGACATCGAACTGGGTTGAG TATATCTCGAAAGCCATCGATACCGTCTGCACCACTGACAACATACTCTT TTACAGTCAGCGTCAACTTCCCATCATGAAGACAAACACTTCTGAATTCA ATAAGATCTTCTTTGTTGCCCCTTACGGATGCGG Run BLAST on NCBI protein sequence of TCONS_00048002-protein >TCONS_00048002-protein ID=TCONS_00048002-protein|Name=TCONS_00048002-protein|organism=Clytia hemisphaerica|type=polypeptide|length=460bp
KNINPLKCTKRTSLYEQILTNAKSTIDKQNRKFNLGNGQLLNDPILAADQ LLFREYADSALFNTNRHDPVFIPPVFQSHQYAKKDSTVHILDYDVDINTL KKCLDNLKKDSPAFWFTRELQSFHCRHWLTKALQAFSELQENNTDKEING KEFSNWILNVKIKYLIVKELATVNMTLPSTTEDKNTFIEACIQELASKSP GSKLEQTLKKTLKDVKKEVENLVKQNPPSHPTIKWLFGLVLSELGEKGEH SFFEKLYSIKDDPVLQDTVILSSINFLTNVQKKMHQEIDVLIFSWTKKLI IGVEIKRTLTIKAFDQLDKYHKLIEERLSDQLGHGWTYHPAILVEKDDLS FNNQHYIDQETDLKCWLSILFAKFPTVPSGIPFIPAVNQVKDLLRIVVFA IHASKTAPITTSNWVEYISKAIDTVCTTDNILFYSQRQLPIMKTNTSEFN KIFFVAPYGC Run BLAST on NCBI transcript from alignment at scaffold_14:504154..506435+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048002 ID=TCONS_00048002|Name=TCONS_00048002|organism=Clytia hemisphaerica|type=transcript|length=2282bp|location=Sequence derived from alignment at scaffold_14:504154..506435+ (Clytia hemisphaerica) CGAAGAATATCAATCCATTAAAATGCACCAAACGAACATCATTGTATGAA
CAAATATTGACAAATGCAAAATCCACCATAGACAAACAAAACCGAAAGTT
CAACCTCGGGAATGGCCAGTTACTTAACGACCCTATTCTTGCCGCTGATC
AGCTTCTCTTTAGAGagtatgctgattcagcattatTCAACACCAACCGC
CACGATCCTGTATTTATTCCCCCAGTTTTTCAATCACACCAATACGCGAA
GAAGGATTCAACCGTGCATATCCTTGATTACGATGTTGACATAAACACTC
TCAAGAAATGTTTGGATAATTTGAAGAAGGATTCGCCAGCCTTTTGGTTC
ACACGTGAGCTCCAATCCTTCCATTGTCGCCACTGGTTAACAAAGGCACT
TCAAGCTTTCTCTGAATTGCAGGAAAACAACACTGACAAAGAGATCAACG
GAAAAGAATTCAGCAATTGGATTCTCAATGTAAAGATCAAGTATCTAATT
GTAAAAGAGTTGGCGACAGTCAATATGACTCTACCATCAACAACTGAGGA
CAAAAACACATTCATCGAAGCATGTATTCAGGAATTGGCTTCAAAATCAC
CAGGATCAAAACTGgaacaaactctcaaaaaggTAACTTATCAACAATTT
GGTTCtcgaaatttataaaaatcctTAGGTAACAAAGTTCTAGGTGAACA
aggcccgggggggtactacccttttcaaccgacgggggtgctccgctgag
gttcgaaaaatggaccctacgtgggactcgaaatttgcaaaaaaagtgac
cctgaatgggactgaaattccaaaattttctcaaattttctactttttcc
ccaaaagtaggtaccctacgagggactggtttttctattttggtgttttt
gcgaccctacctgggactcgtggaggttaaaaaaggtaccctggccagcg
gagcatccccctaacccatcttgccctattACCTCCCCCCGGGGTTTCAT
TACCACAAGTAATCCAACTCATCCCCCCCGGGAACAAGGACCTCTGAAGC
TGATCGTGATTATTATTGTCAATTGTCTTGTGTCGAATCTTTTTGTCTCt
ttgaatacacgcttttttttttataagaatacactttataagaatatcca
tgatgaaaatggccaaaaaattaagagtatggtaagaatatcaccatcat
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtaa
gaatatcaccatcatagaatttagcaactgaacctaagaatgccatttta
aatgcattttaacctgtagattgccaatttcgatcttaacctaagaatac
cgtaagaatatttttggatgattttcgccaaaaagttaagaatatccatg
atgaaatgcaaaaacaccattcttataaaaaaaagcgtgtactttgACTG
GTTTTGACAGTTTATTTCAGATTGATATAGTTCAGTAAAAGAAagaattc
gttttttttaatccCTAATTTCATTTCCAGACGTTAAAAGATGTTAAAAA
AGAAGTCGAAAACTTGGTCAAACAAAACCCACCATCCCATCCAACAATAA
AATGGCTTTTCGGATTAGTTCTATCGGAGCTCGGTGAAAAAGGTGAAcac
tctttttttgaaaaactctaTTCCATCAAAGACGACCCTGTTCTTCAAGA
TACTGTGATTCTCAGTTCCATCAATTTCCTCACCAATGTCCAAAAGAAAA
TGCATCAGGAGATTGACGTCCTTATTTTCTCGTGGACCAAGAAATTAATC
ATAGGCGTAGAAATCAAACGGACACTGACTATAAAAGCTTTTGACCAGTT
GGATAAATACCATAAATTGATAGAGGAGAGGTTGAGTGATCAATTGGGAC
ATGGCTGGACGTACCATCCAGCCATTTTGGTTGAAAAGGACGACCTTTCT
TTTAACAATCAACATTACATTGACCAAGAAACAGATTTGAAATGTTGGTT
ATCCATCTTGTTTGCGAAATTTCCGACCGTTCCCTCTGGAATACCTTTCA
TCCCAGCAGTAAATCAAGTTAAAGACCTCCTGAGAATCGTTGTGTTTGCC
ATTCATGCTTCAAAAACAGCACCCATTACGACATCGAACTGGGTTGAGTA
TATCTCGAAAGCCATCGATACCGTCTGCACCACTGACAACATACTCTTTT
ACAGTCAGCGTCAACTTCCCATCATGAAGACAAACACTTCTGAATTCAAT
AAGATCTTCTTTGTTGCCCCTTACGGATGCGG Coding sequence (CDS) from alignment at scaffold_14:504154..506435+ >TCONS_00048002 ID=TCONS_00048002|Name=TCONS_00048002|organism=Clytia hemisphaerica|type=CDS|length=2760bp|location=Sequence derived from alignment at scaffold_14:504154..506435+ (Clytia hemisphaerica) AAGAATATCAATCCATTAAAATGCACCAAACGAACATCATTGTATGAACA AATATTGACAAATGCAAAATCCACCATAGACAAACAAAACCGAAAGTTCA ACCTCGGGAATGGCCAGTTACTTAACGACCCTATTCTTGCCGCTGATCAG CTTCTCTTTAGAGagtatgctgattcagcattatTCAACACCAACCGCCA CGATCCTGTATTTATTCCCCCAGTTTTTCAATCACACCAATACGCGAAGA AGGATTCAACCGTGCATATCCTTGATTACGATGTTGACATAAACACTCTC AAGAAATGTTTGGATAATTTGAAGAAGGATTCGCCAGCCTTTTGGTTCAC ACGTGAGCTCCAATCCTTCCATTGTCGCCACTGGTTAACAAAGGCACTTC AAGCTTTCTCTGAATTGCAGGAAAACAACACTGACAAAGAGATCAACGGA AAAGAATTCAGCAATTGGATTCTCAATGTAAAGATCAAGTATCTAATTGT AAAAGAGTTGGCGACAGTCAATATGACTCTACCATCAACAACTGAGGACA AAAACACATTCATCGAAGCATGTATTCAGGAATTGGCTTCAAAATCACCA GGATCAAAACTGgaacaaactctcaaaaagACGTTAAAAGATGTTAAAAA AGAAGTCGAAAACTTGGTCAAACAAAACCCACCATCCCATCCAACAATAA AATGGCTTTTCGGATTAGTTCTATCGGAGCTCGGTGAAAAAGGTGAAcac tctttttttgaaaaactctaTTCCATCAAAGACGACCCTGTTCTTCAAGA TACTGTGATTCTCAGTTCCATCAATTTCCTCACCAATGTCCAAAAGAAAA TGCATCAGGAGATTGACGTCCTTATTTTCTCGTGGACCAAGAAATTAATC ATAGGCGTAGAAATCAAACGGACACTGACTATAAAAGCTTTTGACCAGTT GGATAAATACCATAAATTGATAGAGGAGAGGTTGAGTGATCAATTGGGAC ATGGCTGGACGTACCATCCAGCCATTTTGGTTGAAAAGGACGACCTTTCT TTTAACAATCAACATTACATTGACCAAGAAACAGATTTGAAATGTTGGTT ATCCATCTTGTTTGCGAAATTTCCGACCGTTCCCTCTGGAATACCTTTCA TCCCAGCAGTAAATCAAGTTAAAGACCTCCTGAGAATCGTTGTGTTTGCC ATTCATGCTTCAAAAACAGCACCCATTACGACATCGAACTGGGTTGAGTA TATCTCGAAAGCCATCGATACCGTCTGCACCACTGACAACATACTCTTTT ACAGTCAGCGTCAACTTCCCATCATGAAGACAAACACTTCTGAATTCAAT AAGATCTTCTTTGTTGCCCCTTACGGATGCAAGAATATCAATCCATTAAA ATGCACCAAACGAACATCATTGTATGAACAAATATTGACAAATGCAAAAT CCACCATAGACAAACAAAACCGAAAGTTCAACCTCGGGAATGGCCAGTTA CTTAACGACCCTATTCTTGCCGCTGATCAGCTTCTCTTTAGAGagtatgc tgattcagcattatTCAACACCAACCGCCACGATCCTGTATTTATTCCCC CAGTTTTTCAATCACACCAATACGCGAAGAAGGATTCAACCGTGCATATC CTTGATTACGATGTTGACATAAACACTCTCAAGAAATGTTTGGATAATTT GAAGAAGGATTCGCCAGCCTTTTGGTTCACACGTGAGCTCCAATCCTTCC ATTGTCGCCACTGGTTAACAAAGGCACTTCAAGCTTTCTCTGAATTGCAG GAAAACAACACTGACAAAGAGATCAACGGAAAAGAATTCAGCAATTGGAT TCTCAATGTAAAGATCAAGTATCTAATTGTAAAAGAGTTGGCGACAGTCA ATATGACTCTACCATCAACAACTGAGGACAAAAACACATTCATCGAAGCA TGTATTCAGGAATTGGCTTCAAAATCACCAGGATCAAAACTGgaacaaac tctcaaaaagACGTTAAAAGATGTTAAAAAAGAAGTCGAAAACTTGGTCA AACAAAACCCACCATCCCATCCAACAATAAAATGGCTTTTCGGATTAGTT CTATCGGAGCTCGGTGAAAAAGGTGAAcactctttttttgaaaaactcta TTCCATCAAAGACGACCCTGTTCTTCAAGATACTGTGATTCTCAGTTCCA TCAATTTCCTCACCAATGTCCAAAAGAAAATGCATCAGGAGATTGACGTC CTTATTTTCTCGTGGACCAAGAAATTAATCATAGGCGTAGAAATCAAACG GACACTGACTATAAAAGCTTTTGACCAGTTGGATAAATACCATAAATTGA TAGAGGAGAGGTTGAGTGATCAATTGGGACATGGCTGGACGTACCATCCA GCCATTTTGGTTGAAAAGGACGACCTTTCTTTTAACAATCAACATTACAT TGACCAAGAAACAGATTTGAAATGTTGGTTATCCATCTTGTTTGCGAAAT TTCCGACCGTTCCCTCTGGAATACCTTTCATCCCAGCAGTAAATCAAGTT AAAGACCTCCTGAGAATCGTTGTGTTTGCCATTCATGCTTCAAAAACAGC ACCCATTACGACATCGAACTGGGTTGAGTATATCTCGAAAGCCATCGATA CCGTCTGCACCACTGACAACATACTCTTTTACAGTCAGCGTCAACTTCCC ATCATGAAGACAAACACTTCTGAATTCAATAAGATCTTCTTTGTTGCCCC TTACGGATGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00048002-exon-scaffold_14-1491911889:504154..504785 | TCONS_00048002-exon-scaffold_14-1491911889:504154..504785 | Clytia hemisphaerica | exon |
TCONS_00048002-exon-scaffold_14-1510915933:504154..504785 | TCONS_00048002-exon-scaffold_14-1510915933:504154..504785 | Clytia hemisphaerica | exon |
TCONS_00048002-exon-scaffold_14-1575043694:504154..504785 | TCONS_00048002-exon-scaffold_14-1575043694:504154..504785 | Clytia hemisphaerica | exon |
TCONS_00048002-exon-scaffold_14-1491911889:505684..506435 | TCONS_00048002-exon-scaffold_14-1491911889:505684..506435 | Clytia hemisphaerica | exon |
TCONS_00048002-exon-scaffold_14-1510915933:505684..506435 | TCONS_00048002-exon-scaffold_14-1510915933:505684..506435 | Clytia hemisphaerica | exon |
TCONS_00048002-exon-scaffold_14-1575043694:505684..506435 | TCONS_00048002-exon-scaffold_14-1575043694:505684..506435 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_14 | supercontig | scaffold_14:504154..506435 + |
Blast
The following BLAST results are available for this feature:
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