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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048001 ID=TCONS_00048001|Name=TCONS_00048001|organism=Clytia hemisphaerica|type=transcript|length=962bp
aNTTCACTCGGAATGAGCTTAAGAAAAAGttcaaacaagaagaaaaagtc
AATTGTGATCTCATCGATATGGCTTTGTCAAACCGTTTACCGTTGAACAT
GGAGATCTTTTTGCGAGGCAAAGAGGAGCGCGAAGAGGAGGAAAAGCTGA
AAGAATTACTCGACCAAGAAATCGATTCTGAGGAGAACAAggcgaaaaaa
agaaaaaattcgaaaaacaaCGCCAAAGGCGGAACAGGAAAAGGGCGGAA
GAAAAAGGGCGCCAAGGAGAATGACGGGGATGAAAGTAGCGAAACTGAAG
AGGGACAAAGTTCTAAAAGTAAGACCAAAGGAGGAGAGAAAGGCCACAAG
AAAAAGACCGCGAAGGAGAGCGAGGGGCTTGAGAGCGCTGATGAGGAGAG
CTCAATCGTTGATCAAAAACAGAATAAGAAATCAATTAACAAAGGTcgta
aaaaaacaattaaaagcgATGACTCTCGAACGGAGGGCAGTTCTTCGAAT
AAAGGACCCTTGCTGGAGAGAGACATGCCCAAATGTATTGTTCGCATAGA
GAAAACGAAAGttcttaaaaatgttaaaactaCGGACCAAAAACAGAATG
AAGAAAATGCAGACCAGAACGAGTTAGATAATGATAATACTGATTTTCAA
AGGACGCTCAAAGATGTCCCCGAAACGGACTTGACCGATTCCGGTTTTGA
GAAatcggaaaaatcggggaaacagaAACATAAACGTTTGCGAGTGATTG
ATTCGGATAGTGAATAgttctttttaatttctttttttcacttttcggTT
TTGCTTTTGAACTTTACATACGTCTGGTATTCTTTGATTCCTATTTTAAC
CGAGTATCTCTTttgtgaagtatcttataaaaactccagctcatcccaaa
ttatcttcgaattaaaaaaaaaaatcgaattacaGGGATTATTTTATACC
ACTTTCCAGTTG Run BLAST on NCBI protein sequence of TCONS_00048001-protein >TCONS_00048001-protein ID=TCONS_00048001-protein|Name=TCONS_00048001-protein|organism=Clytia hemisphaerica|type=polypeptide|length=254bp
FTRNELKKKFKQEEKVNCDLIDMALSNRLPLNMEIFLRGKEEREEEEKLK
ELLDQEIDSEENKAKKRKNSKNNAKGGTGKGRKKKGAKENDGDESSETEE
GQSSKSKTKGGEKGHKKKTAKESEGLESADEESSIVDQKQNKKSINKGRK
KTIKSDDSRTEGSSSNKGPLLERDMPKCIVRIEKTKVLKNVKTTDQKQNE
ENADQNELDNDNTDFQRTLKDVPETDLTDSGFEKSEKSGKQKHKRLRVID
SDSE Run BLAST on NCBI transcript from alignment at scaffold_14:464191..467442+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048001 ID=TCONS_00048001|Name=TCONS_00048001|organism=Clytia hemisphaerica|type=transcript|length=3252bp|location=Sequence derived from alignment at scaffold_14:464191..467442+ (Clytia hemisphaerica)
aNTTCACTCGGAATGAGCTTAAGGTATAATACTCTCTTGAATTTGGTGGA
TTTTTCCGGCTTTTGGTTAAATCGGCCAAATTAAATAACCTACCAAAGTT
CTGAAAGTTGACCATCCGCCAAATAAAAtacccgccaaatttaacaaaat
ctttttaggATAGAAATGTTATCTAATATCAGCATTTCTAAATAAAAACT
ATCAAGCTAccaagtaattttttatttatgtgTCAAAGATTTCcccacca
aattaaatccaccgcCAAATTATACTAAAAACCCGCTAAAAATTGCATAT
TGCGCAACCGCCTAATCAAGTACACGTGACttgctaaatcaggtcttcgg
ccgttaaatcAGGTCTTCGACCGTTAATTCAGGGCGCTGGAGCGCCCTCA
TTCACAAACGTCGGAGCGCCCTCACCCACAACCCTAACGTGATGAGCCAT
AGATTTGTTAAGTAATGACACTACTCGTAATGGTTAGATCCCGTCTTTAG
AATTTGGTTGTTACATATGTGTAAGAATGATAGAGATAATGTTTATGTAT
GAAGGAGATAACGTGTCTATGTAAAAGATATAATGTGTCTATGTAAAAGA
TATAATGTTTCTATATAAAAGAGATAATGTTTCTATATAAAAGAGATAAT
GATTATGTAAAAAAGTAATGTTTCTATATAAAAGAGATAATGTTTCTATA
TAAATGAGATAATGTTTAAGTATTAAAATGCTGTATACTCTTTTTTTCTT
CTCAGAAAAAGttcaaacaagaagaaaaagtcAATTGTGATCTCATCGAT
ATGGCTTTGTGTAAGTCCTGCTTTATCAAAccctcatttttcttcatttt
acttcaattttttccatactgtcgttttgcataagattcccATTCTCGCA
CTAAAATTCCCTTTGtcacttttctagcggaaaaagaccaggacttcggg
tagctgaaaaataagcttcggaaagttcggcagtttcgtgagtaaacaca
agatGTTCTGTACTATagtagaccagcggccgaggtagtgaattgtgtca
cttcgtagggcaccccttagatcagggaaatttttttatatcaTGCTctt
aatagggtgtagaattgacaaaaaaaaatttactgcatttttcgagtgaa
tcgatagAATTATCAAGGGTTGACTCAgtaaaaaatatcgataattttca
atgcttaaaccaaaatatctcgagatctagacatcgatagttaacaaacc
ataccattttttgGATACTGCTAATTCATGGCTATCCAGCTGtgagaatg
ttttttttctgacaaTGCTCCCAGAAAAATACTGGCATCATCGGAAAAAg
cccaaaacgtcgatttttcgccttaaaaatgccatttctcggcaccaggt
ggtcgaaacttaataaataaccccattttcttcaTCTACTTTTCACACTT
AATCCATTGGTAGCATTGGATAATTGATTTTCAGATCTCGAAAAAACCGT
Ttgtaagttctatcgattaactaaaaatcgattcactcgaaaaatgcagt
aaaattttttttgttaattctacACCCCATTAGGAGCATGATATCAAAGA
ATttccctgatctaaggggtgccctacgaaaaactgttttaaggcctttt
ctgatTCTCAGACGCTGGTCTAaagaaacaaaccctttccaatctcataC
CGGTTATCCCGGGgaaaatagcggaaagattccggaaaagtaacaaaaat
tttaGTGTGGAAATGGGAATTTTATACTAAATGACGGAAATTaaaggaaa
acaaaacaaaacatttctcggattgcaaaaaaaaatatcaaatttttaac
TGCACTGATGTGCTATTTTGCAAAATCCCAGTAGAACTTGATTCAAATCT
GCGAAATCCGCCAAAGTTTATCTAATCaaaatactcttaggtgccaaata
aacggatGGTGGgttcaaataaacgggggggttggaaaattttcgaaatt
tgaaaaaacggAGGGGTatctaattgccgggggggttggaaattgtactt
ctgaaaacccaaaaataaggtaaatataggctaaaatcaggtttttggga
gaaaaataaggggacttctttttgccaactgaaaatattcttaaaattta
ataaacgggggGGGGGGGGTTCTAAAAAGGTCTGgggtttttcgaaaaat
taacaagcgggagggggggcgtttatttggcagcaaaatttgatttcaat
ataaaaaagtatCAAATCTGAATTTCACTTGACAAGACATTCCGTCAGTT
TTTCTCTTCTCAACACACCTCTTATTACTTTGGTTGTATATGATAATAAA
GGGTTTTTGTTTTCACAGCAAACCGTTTACCGTTGAACATGGAGATCTTT
TTGCGAGGCAAAGAGGAGCGCGAAGAGGAGGAAAAGCTGAAAGAATTACT
CGACCAAGAAATCGATTCTGAGGAGAACAAggcgaaaaaaagaaaaaatt
cgaaaaacaaCGCCAAAGGCGGAACAGGAAAAGGGCGGAAGAAAAAGGGC
GCCAAGGAGAATGACGGGGATGAAAGTAGCGAAACTGAAGAGGGACAAAG
TTCTAAAAGTAAGACCAAAGGAGGAGAGAAAGGCCACAAGAAAAAGACCG
CGAAGGAGAGCGAGGGGCTTGAGAGCGCTGATGAGGAGAGCTCAATCGTT
GATCAAAAACAGAATAAGAAATCAATTAACAAAGGTcgtaaaaaaacaat
taaaagcgATGACTCTCGAACGGAGGGCAGTTCTTCGAATAAAGGACCCT
TGCTGGAGAGAGACATGCCCAAATGTATTGTTCGCATAGAGAAAACGAAA
GttcttaaaaatgttaaaactaCGGACCAAAAACAGAATGAAGAAAATGC
AGACCAGAACGAGTTAGATAATGATAATACTGATTTTCAAAGGACGCTCA
AAGATGTCCCCGAAACGGACTTGACCGATTCCGGTTTTGAGAAatcggaa
aaatcggggaaacagaAACATAAACGTTTGCGAGTGATTGATTCGGATAG
TGAATAgttctttttaatttctttttttcacttttcggTTTTGCTTTTGA
ACTTTACATACGTCTGGTATTCTTTGATTCCTATTTTAACCGAGTATCTC
TTttgtgaagtatcttataaaaactccagctcatcccaaattatcttcga
attaaaaaaaaaaatcgaattacaGGGATTATTTTATACCACTTTCCAGT
TG Coding sequence (CDS) from alignment at scaffold_14:464191..467442+ >TCONS_00048001 ID=TCONS_00048001|Name=TCONS_00048001|organism=Clytia hemisphaerica|type=CDS|length=2295bp|location=Sequence derived from alignment at scaffold_14:464191..467442+ (Clytia hemisphaerica)
TTCACTCGGAATGAGCTTAAGAAAAAGttcaaacaagaagaaaaagtcAA
TTGTGATCTCATCGATATGGCTTTGTCAAACCGTTTACCGTTGAACATGG
AGATCTTTTTGCGAGGCAAAGAGGAGCGCGAAGAGGAGGAAAAGCTGAAA
GAATTACTCGACCAAGAAATCGATTCTGAGGAGAACAAggcgaaaaaaag
aaaaaattcgaaaaacaaCGCCAAAGGCGGAACAGGAAAAGGGCGGAAGA
AAAAGGGCGCCAAGGAGAATGACGGGGATGAAAGTAGCGAAACTGAAGAG
GGACAAAGTTCTAAAAGTAAGACCAAAGGAGGAGAGAAAGGCCACAAGAA
AAAGACCGCGAAGGAGAGCGAGGGGCTTGAGAGCGCTGATGAGGAGAGCT
CAATCGTTGATCAAAAACAGAATAAGAAATCAATTAACAAAGGTcgtaaa
aaaacaattaaaagcgATGACTCTCGAACGGAGGGCAGTTCTTCGAATAA
AGGACCCTTGCTGGAGAGAGACATGCCCAAATGTATTGTTCGCATAGAGA
AAACGAAAGttcttaaaaatgttaaaactaCGGACCAAAAACAGAATGAA
GAAAATGCAGACCAGAACGAGTTAGATAATGATAATACTGATTTTCAAAG
GACGCTCAAAGATGTCCCCGAAACGGACTTGACCGATTCCGGTTTTGAGA
AatcggaaaaatcggggaaacagaAACATAAACGTTTGCGAGTGATTGAT
TCGGATAGTGAATAgTTCACTCGGAATGAGCTTAAGAAAAAGttcaaaca
agaagaaaaagtcAATTGTGATCTCATCGATATGGCTTTGTCAAACCGTT
TACCGTTGAACATGGAGATCTTTTTGCGAGGCAAAGAGGAGCGCGAAGAG
GAGGAAAAGCTGAAAGAATTACTCGACCAAGAAATCGATTCTGAGGAGAA
CAAggcgaaaaaaagaaaaaattcgaaaaacaaCGCCAAAGGCGGAACAG
GAAAAGGGCGGAAGAAAAAGGGCGCCAAGGAGAATGACGGGGATGAAAGT
AGCGAAACTGAAGAGGGACAAAGTTCTAAAAGTAAGACCAAAGGAGGAGA
GAAAGGCCACAAGAAAAAGACCGCGAAGGAGAGCGAGGGGCTTGAGAGCG
CTGATGAGGAGAGCTCAATCGTTGATCAAAAACAGAATAAGAAATCAATT
AACAAAGGTcgtaaaaaaacaattaaaagcgATGACTCTCGAACGGAGGG
CAGTTCTTCGAATAAAGGACCCTTGCTGGAGAGAGACATGCCCAAATGTA
TTGTTCGCATAGAGAAAACGAAAGttcttaaaaatgttaaaactaCGGAC
CAAAAACAGAATGAAGAAAATGCAGACCAGAACGAGTTAGATAATGATAA
TACTGATTTTCAAAGGACGCTCAAAGATGTCCCCGAAACGGACTTGACCG
ATTCCGGTTTTGAGAAatcggaaaaatcggggaaacagaAACATAAACGT
TTGCGAGTGATTGATTCGGATAGTGAATAgTTCACTCGGAATGAGCTTAA
GAAAAAGttcaaacaagaagaaaaagtcAATTGTGATCTCATCGATATGG
CTTTGTCAAACCGTTTACCGTTGAACATGGAGATCTTTTTGCGAGGCAAA
GAGGAGCGCGAAGAGGAGGAAAAGCTGAAAGAATTACTCGACCAAGAAAT
CGATTCTGAGGAGAACAAggcgaaaaaaagaaaaaattcgaaaaacaaCG
CCAAAGGCGGAACAGGAAAAGGGCGGAAGAAAAAGGGCGCCAAGGAGAAT
GACGGGGATGAAAGTAGCGAAACTGAAGAGGGACAAAGTTCTAAAAGTAA
GACCAAAGGAGGAGAGAAAGGCCACAAGAAAAAGACCGCGAAGGAGAGCG
AGGGGCTTGAGAGCGCTGATGAGGAGAGCTCAATCGTTGATCAAAAACAG
AATAAGAAATCAATTAACAAAGGTcgtaaaaaaacaattaaaagcgATGA
CTCTCGAACGGAGGGCAGTTCTTCGAATAAAGGACCCTTGCTGGAGAGAG
ACATGCCCAAATGTATTGTTCGCATAGAGAAAACGAAAGttcttaaaaat
gttaaaactaCGGACCAAAAACAGAATGAAGAAAATGCAGACCAGAACGA
GTTAGATAATGATAATACTGATTTTCAAAGGACGCTCAAAGATGTCCCCG
AAACGGACTTGACCGATTCCGGTTTTGAGAAatcggaaaaatcggggaaa
cagaAACATAAACGTTTGCGAGTGATTGATTCGGATAGTGAATAg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048001-exon-scaffold_14-1491911889:464191..464213 | TCONS_00048001-exon-scaffold_14-1491911889:464191..464213 | Clytia hemisphaerica | exon |
| TCONS_00048001-exon-scaffold_14-1510915933:464191..464213 | TCONS_00048001-exon-scaffold_14-1510915933:464191..464213 | Clytia hemisphaerica | exon |
| TCONS_00048001-exon-scaffold_14-1575043694:464191..464213 | TCONS_00048001-exon-scaffold_14-1575043694:464191..464213 | Clytia hemisphaerica | exon |
| TCONS_00048001-exon-scaffold_14-1491911889:464946..465000 | TCONS_00048001-exon-scaffold_14-1491911889:464946..465000 | Clytia hemisphaerica | exon |
| TCONS_00048001-exon-scaffold_14-1510915933:464946..465000 | TCONS_00048001-exon-scaffold_14-1510915933:464946..465000 | Clytia hemisphaerica | exon |
| TCONS_00048001-exon-scaffold_14-1575043694:464946..465000 | TCONS_00048001-exon-scaffold_14-1575043694:464946..465000 | Clytia hemisphaerica | exon |
| TCONS_00048001-exon-scaffold_14-1491911889:466559..467442 | TCONS_00048001-exon-scaffold_14-1491911889:466559..467442 | Clytia hemisphaerica | exon |
| TCONS_00048001-exon-scaffold_14-1510915933:466559..467442 | TCONS_00048001-exon-scaffold_14-1510915933:466559..467442 | Clytia hemisphaerica | exon |
| TCONS_00048001-exon-scaffold_14-1575043694:466559..467442 | TCONS_00048001-exon-scaffold_14-1575043694:466559..467442 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_14 | supercontig | scaffold_14:464191..467442 + |
Blast
The following BLAST results are available for this feature:
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