|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047987 ID=TCONS_00047987|Name=TCONS_00047987|organism=Clytia hemisphaerica|type=transcript|length=2586bpRun BLAST on NCBI transcript from alignment at scaffold_14:270388..309368+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047987 ID=TCONS_00047987|Name=TCONS_00047987|organism=Clytia hemisphaerica|type=transcript|length=38981bp|location=Sequence derived from alignment at scaffold_14:270388..309368+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00047987 vs. Swiss-Prot (Human)
Match: SVEP1 (Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 OS=Homo sapiens GN=SVEP1 PE=1 SV=3) HSP 1 Score: 136.346 bits (342), Expect = 2.459e-32 Identity = 104/398 (26.13%), Postives = 157/398 (39.45%), Query Frame = 1
Query: 403 CTCRKGFE--------------RKPNNPYGCQDINECLSN-NGGCDHNCH---DYQGGHYCSCKVGFRLRKDGKACEELFCPVLEAPYHGHVTPATCSKKYENIAVGSTCKFECSKGFELKTNVGAQTLSCRIDGTWDHGTPNCHPVKCPTLQRPINGGLVPARCHDDQRGYNEFGQRCVTYCRHGYRLRGAPTKY-CQANKSWSNNNGPLQCVKIIEPPYVNCPTDIQVTLPNNANQISLGSKFQQPQSNVNSSMITSYPDNVGPDYKFRFGKTLVSYVAM-ANGQQVSCSYFVDVKDSTPPTVSDCPKDIIQNTGRLSEIITWAEPKFSDNVGVRRVMGPVRKPGEIWYPGEEMIMQYVASDIAGNQKKCSFKVALKAASCPKLYQTDDAYLTVTP 1536
C CR+G+ + P N Y Q N C ++ N C CH D G C C CP L P HGH++ +T Y+ +TC C +G+ L+ G+ L+C+ + WD P C C T Q P + + P C +FG C CR G+ L G C + W+ C K +E P +NCP DI+ + ++ + + N + P Y F G + Y A +G Q SC + + V D+ PP + C +W EP+FSDN G V+ G++ +P E I+QY A+D +GN + C + +K + C + + TP
Sbjct: 360 CVCREGYRASGQTCELVHCPALKPPENGYFIQ--NTCNNHFNAACGVRCHPGFDLVGSSIILCLPNGLWSGSESYCRVRTCPHLRQPKHGHISCSTREMLYK-----TTCLVACDEGYRLE---GSDKLTCQGNSQWDGPEPRCVERHCSTFQMPKDVIISPHNCGKQPA---KFGTICYVSCRQGFILSGVKEMLRCTTSGKWNVGVQAAVC-KDVEAPQINCPKDIEAKTLEQQDSANVTWQIPTAKDNSGEKVSVHVHPAFTPPYLFPIGDVAIVYTATDLSGNQASCIFHIKVIDAEPPVIDWCRSPPPVQVSEKVHAASWDEPQFSDNSGAELVITRSHTQGDL-FPQGETIVQYTATDPSGNNRTCDIHIVIKGSPCEIPFTPVNGDFICTP 742 The following BLAST results are available for this feature:
BLAST of TCONS_00047987 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.