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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047980 ID=TCONS_00047980|Name=TCONS_00047980|organism=Clytia hemisphaerica|type=transcript|length=2524bpRun BLAST on NCBI protein sequence of TCONS_00047980-protein >TCONS_00047980-protein ID=TCONS_00047980-protein|Name=TCONS_00047980-protein|organism=Clytia hemisphaerica|type=polypeptide|length=765bp MNWLFSIFLTIFMLSSVQCKAGWSGWSEWSSWGKGLCSGNKRIKTRSCTNRun BLAST on NCBI transcript from alignment at scaffold_14:230058..249887+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047980 ID=TCONS_00047980|Name=TCONS_00047980|organism=Clytia hemisphaerica|type=transcript|length=19830bp|location=Sequence derived from alignment at scaffold_14:230058..249887+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_14:230058..249887+ >TCONS_00047980 ID=TCONS_00047980|Name=TCONS_00047980|organism=Clytia hemisphaerica|type=CDS|length=32130bp|location=Sequence derived from alignment at scaffold_14:230058..249887+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00047980 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 140.198 bits (352), Expect = 1.420e-33 Identity = 91/238 (38.24%), Postives = 120/238 (50.42%), Query Frame = 3
Query: 438 IDGGLSDWTQWSTCEKPCGGSIVNRTRVCDNPPPSRGGSQCFGKTVETKMECVMPCPESKTDGXXXXXXXXXXCPKQCTRNGGSLIKRYRQCNMPPPMFGGKPCPGNSTEEIIGCFDVCPVDGGFSQWSSFTPCSRSCGTGFKSRYRLCNDPVPQGSTAQNCTGAFNEAKHCRLAICEGAVNGKWGXXXXXXXXXXNVECFKGVRSRKRSCSNPAPSKGGDDCLGSADETEICPKTNC 1151
+ GG S W+ W C CG I R+R+C+ P P+ GG C G +E + PCP DGSWS WS W C + C R + R R CN P GG+PC GN+ E I+ CPV G +S W + CS SCG G ++R RLCN+P P C GA + + C C ++GKW + S + +V C G R R R CS+P P GG C GS +++ C C
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCP---VDGSWSEWSLWEECTRSCGRGNQT---RTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNP-PPAFGGSYCDGAETQMQVCNERNC--PIHGKWA--TWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPC 4754 HSP 2 Score: 134.42 bits (337), Expect = 9.216e-32 Identity = 101/278 (36.33%), Postives = 136/278 (48.92%), Query Frame = 3
Query: 336 CSGNKRIKTRSCTNPLPTSGNY-CHG-----ENSRKEDGPIDGGLSDWTQWSTCEKPCGGSIVNRTRVCDNPPPSRGGSQCFGKTVETKMECVMPCPESKTDGXXXXXXXXXXCPKQCTRNGGSLIKRYRQCNMPPPMFGGKPCPGNSTEEIIGCFDVCPVDGGFSQWSSFTPCSRSCGTGFKSRYRLCNDPVPQGSTAQNCTGAFNEAKHCRLAICEGAVNGKWGXXXXXXXXXXNVECFKGVRSRKRSCSNPAPSKGGDDCLGSADETEICPKTNC 1151
C + ++R C PLP +G C G N + + P+DG S+W+ W C + CG RTR C+NP GG C G VE M + PCP G+WS W W +C + C G R R CN PPP FGG C G T+ + CP+ G ++ W+S++ CS SCG G + R R C+DPVPQ + C G+ ++ C C +G W WS W +CS+ C G R R+C NP PS GG C G + + C C
Sbjct: 4545 CGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCP---VHGAWSAWQPWGTCSESC---GKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYG-GRKCEGSDVQSDFCNSDPC--PTHGNWSPWSGWGTCSRT--CNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMC 4811 HSP 3 Score: 130.183 bits (326), Expect = 1.916e-30 Identity = 93/278 (33.45%), Postives = 130/278 (46.76%), Query Frame = 3
Query: 336 CSGNKRIKTRSCTNP------LPTSGNYCHGENSRKEDGPIDGGLSDWTQWSTCEKPCGGSIVNRTRVCDNPPPSRGGSQCFGKTVETKMECVMPCPESKTDGXXXXXXXXXXCPKQCTRNGGSLIKRYRQCNMPPPMFGGKPCPGNSTEEIIGCFDVCPVDGGFSQWSSFTPCSRSCGTGFKSRYRLCNDPVPQGSTAQNCTGAFNEAKHCRLAICEGAVNGKWGXXXXXXXXXXNVECFKGVRSRKRSCSNPAPSKGGDDCLGSADETEICPKTNC 1151
C + +TR+C NP P GN P+ G S W W TC + CG R R+C+NPPP+ GGS C G + ++ CP G W+ W+ WS+C C GG +R R C+ P P +GG+ C G+ + D CP G +S WS + CSR+C G RYR C++P P + + C G ++ + C +C V+G WG S S + C G ++RKR C +P P KGG C G + C C
Sbjct: 4602 CGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCP---IHGKWATWASWSACSVSC---GGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNP-PPSNGGRACGGPDSQIQRCNTDMC--PVDGSWG--SWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQAC 4868 HSP 4 Score: 87.0409 bits (214), Expect = 3.024e-17 Identity = 60/160 (37.50%), Postives = 78/160 (48.75%), Query Frame = 3
Query: 336 CSGNKRIKTRSCTNPLPT-SGNYCHGENSRKE-----DGPIDGGLSDWTQWSTCEKPCGGSIVNRTRVCDNPPPSRGGSQCFGKTVETKMECVMPCPESKTDGXXXXXXXXXXCPKQCTRNGGSLIKRYRQCNMPPPMFGGKPCPGNSTEEIIGCFDVCP 797
C G R +TR C++P+P G C G + + + P G S W+ W TC + C G + R R CDNPPPS GG C G + + CP DGSW W WS C C GG R R C+ P P+ GG+PCPG++T+ CP
Sbjct: 4716 CGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCP---VDGSWGSWHSWSQCSASC---GGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869 The following BLAST results are available for this feature:
BLAST of TCONS_00047980 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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