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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047972 ID=TCONS_00047972|Name=TCONS_00047972|organism=Clytia hemisphaerica|type=transcript|length=1681bp
GTAACTTTCAGTAGAAGGGAGATATATAATTAATACATGATTATGGAGTG
AAGACATGCAGATAATGCATACCAAAAACGTAACTTCAAATTAGTCTCAA
TCAATTCTTATCCCCGGAACCGTAATGTCAACCCTCGGCTGACATTtgga
ggttctaccgagatccTAATGGGTCTCGGACCGTTGTGATGTTCTGGGGA
ATGTAATAGAAGTGAGAAAATCTGAAGGTTCTTTAACAAAGATAGCGATA
TTGAATGAATTTTTATGAGTAGCAGTAAGTCCTGAGTAAGACACTAAACT
GTTCCCGGGCTCCTTTGAGCAAGGTCAGCACCCGGAAACTCCCCTTTGTC
AGGGTAACGACGAAGTTAGTTAACGTATAATGGCAATTACAAGAGGTACA
TGTGTACGAATTTTTGTGATTTGCGGGTATTTATGAGGAAATACGAATGT
TGTGACTTACAAATATTTATGGTAAAATATGAATCAAGAGTAAAATAAAA
TCATGGTGTGGTTCGCGAACATTAGTCCGAACATTAAGAATTGTGGTGCA
GTACGAGCAATTCGGAGATTAAAGATTTAACGTGCTATACAAGTATAGAG
AGCAGTTGCCAACAGTAGAAGAAAATACGACAGCAAAATGTACAGTGTGG
AAATCAATCAACGATTCACAAGCTTAAATGCAGATGCCAGAGCGGCAGTG
AGAGAAGAGCTGCAGGAACGTGTGCGAATAATCATCAATTCGTTATCAGG
CAAAACTCGTCCCTCTCATGGTTCACATCACGTTGGTACTTATGGTTGAT
GTACCACACAACGCAGGGTGAATTGAACTTGATGGGACACGGTTCACGCC
CCTTACCATTTGGAGGATTTGTGAACAATCCACACTTTCAGAAATTATTT
GTAAGAGCTGGCGCCATAGTGAAGAAAGAGCATCAAAGAATCCTGAGACG
GGTTCGAAGGAGAGGAACGGTAAGTGTAGACCTCACCCGACTCATCTCCT
GGACGGACTAACGATTCATCATGCGACCACTGGCCAGACGCACCggtaaT
GGGGCTGATGGATTGTCACGAAATAGGGTTATAAGGGATTGGACGCGTAG
GACCACTGTTTCACCTTGCAACACAGACGATGAATGTATGGACCAGATTG
GCAACAGCGACACGCAGACCAGTTGCTGTGGGCAGCCAGCATTCTGCAGG
AATTGTTTGGACATTTATATGGATTTGTATTCGGACAGCACTTATCCTGT
GGCAAAGCGTCGCCCACTGTGCAACTGGGAGTGGCCTGACGGTCCAAGAA
TGGTGCCAAGACAAGAAGGACAATAAATAGAGATTGCGCATGAACATGGC
ACCTCTGAATTGTtcttgaaaatttcatgaaaaaagtttATTGCTAGATA
TATTTATTATTAGGATATTTATTGTTAGAAACCAAATTACATAAAAACCA
AAAAGATTGTAGTATTTTATGTTAGAAAGTTATTATTTACTTAGTTTTAG
AATGTATCTTTGACGAAATCTTGTAACGAGGACGTCACATTTTTTTTTGT
GGGGGGTTGTCAGGCAGTCATATTTCATTTTGGCCCACCTTCGGTATGGC
TAGCATGCCGAAGGATATTTGGTAAGGAGCCTACAACTCTCAGTAGAAGG
GAGATATATAATTAATATATGATTATGGAGT Run BLAST on NCBI transcript from alignment at scaffold_139:661137..662817 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047972 ID=TCONS_00047972|Name=TCONS_00047972|organism=Clytia hemisphaerica|type=transcript|length=1681bp|location=Sequence derived from alignment at scaffold_139:661137..662817 (Clytia hemisphaerica)
ACTCCATAATCATATATTAATTATATATCTCCCTTCTACTGAGAGTTGTA
GGCTCCTTACCAAATATCCTTCGGCATGCTAGCCATACCGAAGGTGGGCC
AAAATGAAATATGACTGCCTGACAACCCCCCACAAAAAAAAATGTGACGT
CCTCGTTACAAGATTTCGTCAAAGATACATTCTAAAACTAAGTAAATAAT
AACTTTCTAACATAAAATACTACAATCTTTTTGGTTTTTATGTAATTTGG
TTTCTAACAATAAATATCCTAATAATAAATATATCTAGCAATaaactttt
ttcatgaaattttcaagaACAATTCAGAGGTGCCATGTTCATGCGCAATC
TCTATTTATTGTCCTTCTTGTCTTGGCACCATTCTTGGACCGTCAGGCCA
CTCCCAGTTGCACAGTGGGCGACGCTTTGCCACAGGATAAGTGCTGTCCG
AATACAAATCCATATAAATGTCCAAACAATTCCTGCAGAATGCTGGCTGC
CCACAGCAACTGGTCTGCGTGTCGCTGTTGCCAATCTGGTCCATACATTC
ATCGTCTGTGTTGCAAGGTGAAACAGTGGTCCTACGCGTCCAATCCCTTA
TAACCCTATTTCGTGACAATCCATCAGCCCCAttaccGGTGCGTCTGGCC
AGTGGTCGCATGATGAATCGTTAGTCCGTCCAGGAGATGAGTCGGGTGAG
GTCTACACTTACCGTTCCTCTCCTTCGAACCCGTCTCAGGATTCTTTGAT
GCTCTTTCTTCACTATGGCGCCAGCTCTTACAAATAATTTCTGAAAGTGT
GGATTGTTCACAAATCCTCCAAATGGTAAGGGGCGTGAACCGTGTCCCAT
CAAGTTCAATTCACCCTGCGTTGTGTGGTACATCAACCATAAGTACCAAC
GTGATGTGAACCATGAGAGGGACGAGTTTTGCCTGATAACGAATTGATGA
TTATTCGCACACGTTCCTGCAGCTCTTCTCTCACTGCCGCTCTGGCATCT
GCATTTAAGCTTGTGAATCGTTGATTGATTTCCACACTGTACATTTTGCT
GTCGTATTTTCTTCTACTGTTGGCAACTGCTCTCTATACTTGTATAGCAC
GTTAAATCTTTAATCTCCGAATTGCTCGTACTGCACCACAATTCTTAATG
TTCGGACTAATGTTCGCGAACCACACCATGATTTTATTTTACTCTTGATT
CATATTTTACCATAAATATTTGTAAGTCACAACATTCGTATTTCCTCATA
AATACCCGCAAATCACAAAAATTCGTACACATGTACCTCTTGTAATTGCC
ATTATACGTTAACTAACTTCGTCGTTACCCTGACAAAGGGGAGTTTCCGG
GTGCTGACCTTGCTCAAAGGAGCCCGGGAACAGTTTAGTGTCTTACTCAG
GACTTACTGCTACTCATAAAAATTCATTCAATATCGCTATCTTTGTTAAA
GAACCTTCAGATTTTCTCACTTCTATTACATTCCCCAGAACATCACAACG
GTCCGAGACCCATTAggatctcggtagaacctccaAATGTCAGCCGAGGG
TTGACATTACGGTTCCGGGGATAAGAATTGATTGAGACTAATTTGAAGTT
ACGTTTTTGGTATGCATTATCTGCATGTCTTCACTCCATAATCATGTATT
AATTATATATCTCCCTTCTACTGAAAGTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047972-exon-scaffold_139-1491911889:661137..662817 | TCONS_00047972-exon-scaffold_139-1491911889:661137..662817 | Clytia hemisphaerica | exon |
| TCONS_00047972-exon-scaffold_139-1510915933:661137..662817 | TCONS_00047972-exon-scaffold_139-1510915933:661137..662817 | Clytia hemisphaerica | exon |
| TCONS_00047972-exon-scaffold_139-1575043694:661137..662817 | TCONS_00047972-exon-scaffold_139-1575043694:661137..662817 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_139 | supercontig | scaffold_139:661137..662817 . |
Blast
The following BLAST results are available for this feature:
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