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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047965 ID=TCONS_00047965|Name=TCONS_00047965|organism=Clytia hemisphaerica|type=transcript|length=1347bp
ATCATGTCTCTCTCTCTAATTGTCTCTTTCAgatttttaataaagaaaaa
catAGGAAAATGGGAAGTCAATTTTCTAATATCGTCGGCAAGAATAAGGA
GTGGACAAAATGCATTTTTGCCCTCACTTTTCACGGAAAGATGGCTTTGC
TGCAGATCTTACACGATCCTGCCTACCAAGGTCTTCCTGTTGATGAGAAA
AAGTTGTATCAGTTTTTCCTTGCAAATAAAACAACACTGGACAAGTTGct
caaaaataacattttgaaGAAAGACCAGTATGAACTTCTTTTACCTCCTG
GAAAACAAgaaacaacgtcaaaacttttCGACATCACCCTTTTGGCatta
ttgataagaaattttgtgaatattccGAAACCTCAAGGAGGATGGGGAAT
CAAAGAGCCCAAAGCTGGCGATACGTCTATTGCCGTCTTTGTCATTTTGA
TTCGTGAACTGAGAAATGAAATATTGCATGGTACACCAGAGAATTTCCTT
CAACCACATTATTTCCAGAACATCTGGATTAAGATTCGTTGTAGCTTACT
TGGTGTTAAGTATAATGGAATCGCTGACTTTGATAGCATATTAAACGACA
AAGTTGTATTTGATTTAAACGATGGAAAGATGTTCATCGAGGGCTTGGTT
GAAGACTTGAAAGAGgatctcaaaaacaaaattgatcAAGAAAAGCAGGA
TATATTACTTAACATTTTGGATCAAGTGGACAAAAAGATTAAAGAAAACA
AAGCACAAGAAGTGAAAGAGATTGTtgaaccagatttattcaggtAAGTG
GATTTTCGAAACTATTCCTCTTGACTACCGTGAGAATCTCATTTTTGTCT
TTTCTGCTTGGGTAACCTTTGACTCCGCTTTGACAATTTGATCTGTATTT
GCAGATTGAACATTAAAGCTAGAAtactaaatatttcaaaaggtaCCCTC
CATAGCCAGGGCTAATGAACGATTCTGTAACATAAAGAGGCCAGTATCTT
AAATTGGAGGAATGACCGTTTCTAGGTATCTTTCCAAATGCTATAACCGC
GTGGTTTGAAAATTCATCGGCAATGGGCTCTTGCAGAAATCAACatgaaa
ggggttgcggaacgagcgttccgTTTTCGCAGAGCGAAGTTTTGTGACTC
AGGAAATTCagcgctcgctgcgctcgctgcTAAAAGCGATAAAAAAACAT
ACTTTTGATTGCCTGGCTAAGGTTATTGAAGGTTATTGACaaatcttcca
aaaatgtaaaaatacttTCGATTTACATAAGAAAAGGAATgagaaaattg
ccaaagatTACCTAACGGATTCGATCCACACcaaaaacgtgtagttt Run BLAST on NCBI protein sequence of TCONS_00047965-protein >TCONS_00047965-protein ID=TCONS_00047965-protein|Name=TCONS_00047965-protein|organism=Clytia hemisphaerica|type=polypeptide|length=264bp
HVSLSNCLFQIFNKEKHRKMGSQFSNIVGKNKEWTKCIFALTFHGKMALL
QILHDPAYQGLPVDEKKLYQFFLANKTTLDKLLKNNILKKDQYELLLPPG
KQETTSKLFDITLLALLIRNFVNIPKPQGGWGIKEPKAGDTSIAVFVILI
RELRNEILHGTPENFLQPHYFQNIWIKIRCSLLGVKYNGIADFDSILNDK
VVFDLNDGKMFIEGLVEDLKEDLKNKIDQEKQDILLNILDQVDKKIKENK
AQEVKEIVEPDLFR Run BLAST on NCBI transcript from alignment at scaffold_139:588958..590304 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047965 ID=TCONS_00047965|Name=TCONS_00047965|organism=Clytia hemisphaerica|type=transcript|length=1347bp|location=Sequence derived from alignment at scaffold_139:588958..590304 (Clytia hemisphaerica)
aaactacacgtttttgGTGTGGATCGAATCCGTTAGGTAatctttggcaa
ttttctcATTCCTTTTCTTATGTAAATCGAaagtatttttacatttttgg
aagatttGTCAATAACCTTCAATAACCTTAGCCAGGCAATCAAAAGTATG
TTTTTTTATCGCTTTTAgcagcgagcgcagcgagcgctGAATTTCCTGAG
TCACAAAACTTCGCTCTGCGAAAAcggaacgctcgttccgcaaccccttt
catGTTGATTTCTGCAAGAGCCCATTGCCGATGAATTTTCAAACCACGCG
GTTATAGCATTTGGAAAGATACCTAGAAACGGTCATTCCTCCAATTTAAG
ATACTGGCCTCTTTATGTTACAGAATCGTTCATTAGCCCTGGCTATGGAG
GGtaccttttgaaatatttagtaTTCTAGCTTTAATGTTCAATCTGCAAA
TACAGATCAAATTGTCAAAGCGGAGTCAAAGGTTACCCAAGCAGAAAAGA
CAAAAATGAGATTCTCACGGTAGTCAAGAGGAATAGTTTCGAAAATCCAC
TTacctgaataaatctggttcaACAATCTCTTTCACTTCTTGTGCTTTGT
TTTCTTTAATCTTTTTGTCCACTTGATCCAAAATGTTAAGTAATATATCC
TGCTTTTCTTgatcaattttgtttttgagatcCTCTTTCAAGTCTTCAAC
CAAGCCCTCGATGAACATCTTTCCATCGTTTAAATCAAATACAACTTTGT
CGTTTAATATGCTATCAAAGTCAGCGATTCCATTATACTTAACACCAAGT
AAGCTACAACGAATCTTAATCCAGATGTTCTGGAAATAATGTGGTTGAAG
GAAATTCTCTGGTGTACCATGCAATATTTCATTTCTCAGTTCACGAATCA
AAATGACAAAGACGGCAATAGACGTATCGCCAGCTTTGGGCTCTTTGATT
CCCCATCCTCCTTGAGGTTTCggaatattcacaaaatttcttatcaataa
tGCCAAAAGGGTGATGTCGaaaagttttgacgttgtttcTTGTTTTCCAG
GAGGTAAAAGAAGTTCATACTGGTCTTTCttcaaaatgttatttttgagC
AACTTGTCCAGTGTTGTTTTATTTGCAAGGAAAAACTGATACAACTTTTT
CTCATCAACAGGAAGACCTTGGTAGGCAGGATCGTGTAAGATCTGCAGCA
AAGCCATCTTTCCGTGAAAAGTGAGGGCAAAAATGCATTTTGTCCACTCC
TTATTCTTGCCGACGATATTAGAAAATTGACTTCCCATTTTCCTatgttt
ttctttattaaaaatcTGAAAGAGACAATTAGAGAGAGAGACATGAT Coding sequence (CDS) from alignment at scaffold_139:588958..590304 >TCONS_00047965 ID=TCONS_00047965|Name=TCONS_00047965|organism=Clytia hemisphaerica|type=CDS|length=795bp|location=Sequence derived from alignment at scaffold_139:588958..590304 (Clytia hemisphaerica)
TTacctgaataaatctggttcaACAATCTCTTTCACTTCTTGTGCTTTGT
TTTCTTTAATCTTTTTGTCCACTTGATCCAAAATGTTAAGTAATATATCC
TGCTTTTCTTgatcaattttgtttttgagatcCTCTTTCAAGTCTTCAAC
CAAGCCCTCGATGAACATCTTTCCATCGTTTAAATCAAATACAACTTTGT
CGTTTAATATGCTATCAAAGTCAGCGATTCCATTATACTTAACACCAAGT
AAGCTACAACGAATCTTAATCCAGATGTTCTGGAAATAATGTGGTTGAAG
GAAATTCTCTGGTGTACCATGCAATATTTCATTTCTCAGTTCACGAATCA
AAATGACAAAGACGGCAATAGACGTATCGCCAGCTTTGGGCTCTTTGATT
CCCCATCCTCCTTGAGGTTTCggaatattcacaaaatttcttatcaataa
tGCCAAAAGGGTGATGTCGaaaagttttgacgttgtttcTTGTTTTCCAG
GAGGTAAAAGAAGTTCATACTGGTCTTTCttcaaaatgttatttttgagC
AACTTGTCCAGTGTTGTTTTATTTGCAAGGAAAAACTGATACAACTTTTT
CTCATCAACAGGAAGACCTTGGTAGGCAGGATCGTGTAAGATCTGCAGCA
AAGCCATCTTTCCGTGAAAAGTGAGGGCAAAAATGCATTTTGTCCACTCC
TTATTCTTGCCGACGATATTAGAAAATTGACTTCCCATTTTCCTatgttt
ttctttattaaaaatcTGAAAGAGACAATTAGAGAGAGAGACATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047965-exon-scaffold_139-1491911889:588958..590304 | TCONS_00047965-exon-scaffold_139-1491911889:588958..590304 | Clytia hemisphaerica | exon |
| TCONS_00047965-exon-scaffold_139-1510915933:588958..590304 | TCONS_00047965-exon-scaffold_139-1510915933:588958..590304 | Clytia hemisphaerica | exon |
| TCONS_00047965-exon-scaffold_139-1575043694:588958..590304 | TCONS_00047965-exon-scaffold_139-1575043694:588958..590304 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_139 | supercontig | scaffold_139:588958..590304 . |
Blast
The following BLAST results are available for this feature:
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