TCONS_00047959 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047959
Unique NameTCONS_00047959
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length691

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047959 ID=TCONS_00047959|Name=TCONS_00047959|organism=Clytia hemisphaerica|type=transcript|length=691bp
GGGGGggtaagatttcattacaaaagggggggatgggtatataggggggg
atgaaataaacctaggggggttcatacccctctgcaaactatgaaatCAA
AATCCAAAGTTGGACCACTGCGtgacaaaaataattctttgatATATGAT
GCTGCCCGTATTGCTAATATAATCCAAGACCAATACACATCGGTTTTCAG
TGTACCAtcggaaaatgacgtcactcatccAACAATATGTCCAAACGTGC
TAAAAGACATAGACTttgacaaaaaagatttcattgaAGCAATCTCAACA
TTGTCACCAAACTCTGCTCCAGGTTCTGATGAATTTCCTgcgattttgct
gaaaaattgcaaagaagAACTTGCTAAGCCACTCGCAATATTCTGGATGA
ACTGTCTGAACCATGGAGTAACAGAGGAGATTCACAAAAGAAATCATATC
ACACCAATATCAAAGGGTGGAGATCAAGGAGAGCCATCTAACTACAGGCC
AGTATCACTTACGTCCCATCTCACCAAGGTGTTTGAGAAAATAGTTCGAA
AGAAGATAGTCGAATTTATCAACAACAATGACTTGCTCAACCCAACACAG
CATGGTTTCCGGGAAGGGCGATCATGCCTTAGTCAATTACTCAGCCACTA
TGACAGTATCCTATCAAAACTAGAAGAAGGATTGGATGTAG
Run BLAST on NCBI

protein sequence of TCONS_00047959-protein

>TCONS_00047959-protein ID=TCONS_00047959-protein|Name=TCONS_00047959-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
MKSKSKVGPLRDKNNSLIYDAARIANIIQDQYTSVFSVPSENDVTHPTIC
PNVLKDIDFDKKDFIEAISTLSPNSAPGSDEFPAILLKNCKEELAKPLAI
FWMNCLNHGVTEEIHKRNHITPISKGGDQGEPSNYRPVSLTSHLTKVFEK
IVRKKIVEFINNNDLLNPTQHGFREGRSCLSQLLSHYDSILSKLEEGLDV
Run BLAST on NCBI

transcript from alignment at scaffold_139:399598..400288

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047959 ID=TCONS_00047959|Name=TCONS_00047959|organism=Clytia hemisphaerica|type=transcript|length=691bp|location=Sequence derived from alignment at scaffold_139:399598..400288 (Clytia hemisphaerica)
CTACATCCAATCCTTCTTCTAGTTTTGATAGGATACTGTCATAGTGGCTG
AGTAATTGACTAAGGCATGATCGCCCTTCCCGGAAACCATGCTGTGTTGG
GTTGAGCAAGTCATTGTTGTTGATAAATTCGACTATCTTCTTTCGAACTA
TTTTCTCAAACACCTTGGTGAGATGGGACGTAAGTGATACTGGCCTGTAG
TTAGATGGCTCTCCTTGATCTCCACCCTTTGATATTGGTGTGATATGATT
TCTTTTGTGAATCTCCTCTGTTACTCCATGGTTCAGACAGTTCATCCAGA
ATATTGCGAGTGGCTTAGCAAGTTcttctttgcaatttttcagcaaaatc
gcAGGAAATTCATCAGAACCTGGAGCAGAGTTTGGTGACAATGTTGAGAT
TGCTtcaatgaaatcttttttgtcaaAGTCTATGTCTTTTAGCACGTTTG
GACATATTGTTggatgagtgacgtcattttccgaTGGTACACTGAAAACC
GATGTGTATTGGTCTTGGATTATATTAGCAATACGGGCAGCATCATATat
caaagaattatttttgtcaCGCAGTGGTCCAACTTTGGATTTTGatttca
tagtttgcagaggggtatgaacccccctaggtttatttcatcccccccta
tatacccatcccccccttttgtaatgaaatcttaccCCCCC

Coding sequence (CDS) from alignment at scaffold_139:399598..400288

>TCONS_00047959 ID=TCONS_00047959|Name=TCONS_00047959|organism=Clytia hemisphaerica|type=CDS|length=600bp|location=Sequence derived from alignment at scaffold_139:399598..400288 (Clytia hemisphaerica)
TACATCCAATCCTTCTTCTAGTTTTGATAGGATACTGTCATAGTGGCTGA
GTAATTGACTAAGGCATGATCGCCCTTCCCGGAAACCATGCTGTGTTGGG
TTGAGCAAGTCATTGTTGTTGATAAATTCGACTATCTTCTTTCGAACTAT
TTTCTCAAACACCTTGGTGAGATGGGACGTAAGTGATACTGGCCTGTAGT
TAGATGGCTCTCCTTGATCTCCACCCTTTGATATTGGTGTGATATGATTT
CTTTTGTGAATCTCCTCTGTTACTCCATGGTTCAGACAGTTCATCCAGAA
TATTGCGAGTGGCTTAGCAAGTTcttctttgcaatttttcagcaaaatcg
cAGGAAATTCATCAGAACCTGGAGCAGAGTTTGGTGACAATGTTGAGATT
GCTtcaatgaaatcttttttgtcaaAGTCTATGTCTTTTAGCACGTTTGG
ACATATTGTTggatgagtgacgtcattttccgaTGGTACACTGAAAACCG
ATGTGTATTGGTCTTGGATTATATTAGCAATACGGGCAGCATCATATatc
aaagaattatttttgtcaCGCAGTGGTCCAACTTTGGATTTTGatttcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030520XLOC_030520Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047959-proteinTCONS_00047959-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047959-exon-scaffold_139-1491911889:399598..400288TCONS_00047959-exon-scaffold_139-1491911889:399598..400288Clytia hemisphaericaexon
TCONS_00047959-exon-scaffold_139-1510915933:399598..400288TCONS_00047959-exon-scaffold_139-1510915933:399598..400288Clytia hemisphaericaexon
TCONS_00047959-exon-scaffold_139-1575043694:399598..400288TCONS_00047959-exon-scaffold_139-1575043694:399598..400288Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_139supercontigscaffold_139:399598..400288 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.10084	6.83631	8.92484	10.2169	16.8612	12.7457	13.9916	14.1599	6.35962	7.39231	8.60917	8.48912	6.12259	6.75952	3.23398	3.57073	2.62453	3.5838	4.12656	4.57841	7.48973	6.4044	1.97903	2.74802	11.2335	8.07773	6.07591	3.83633	4.16151	3.63358
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047959 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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