TCONS_00047949 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047949
Unique NameTCONS_00047949
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length283

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047949 ID=TCONS_00047949|Name=TCONS_00047949|organism=Clytia hemisphaerica|type=transcript|length=283bp
ATTATACATATGACATAACTTTACCCAGGAAAAGGTAAACCACACCACCT
CATGCAAGGCCGTTTTACGTTCATTGTGCAGCCGTAACTAAGAAAATTAC
CTTGCATCGCACAGAGtgtaaaacaacaaaacaaaagttttcccagCATT
TTCAAAGATTATCACCAAGTGATTGCTCGAGAagtaaattgattttttaa
caagTAGAGTTCCTTATCGTTCAAGAACTAGATCTCAATTGAAACATTAG
TGCATGAGAGCACATATGATCAACAAGGCAGGA
Run BLAST on NCBI

transcript from alignment at scaffold_139:115688..115970

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047949 ID=TCONS_00047949|Name=TCONS_00047949|organism=Clytia hemisphaerica|type=transcript|length=283bp|location=Sequence derived from alignment at scaffold_139:115688..115970 (Clytia hemisphaerica)
TCCTGCCTTGTTGATCATATGTGCTCTCATGCACTAATGTTTCAATTGAG
ATCTAGTTCTTGAACGATAAGGAACTCTActtgttaaaaaatcaatttac
tTCTCGAGCAATCACTTGGTGATAATCTTTGAAAATGctgggaaaacttt
tgttttgttgttttacaCTCTGTGCGATGCAAGGTAATTTTCTTAGTTAC
GGCTGCACAATGAACGTAAAACGGCCTTGCATGAGGTGGTGTGGTTTACC
TTTTCCTGGGTAAAGTTATGTCATATGTATAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030510XLOC_030510Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047949-exon-scaffold_139-1491911889:115688..115970TCONS_00047949-exon-scaffold_139-1491911889:115688..115970Clytia hemisphaericaexon
TCONS_00047949-exon-scaffold_139-1510915933:115688..115970TCONS_00047949-exon-scaffold_139-1510915933:115688..115970Clytia hemisphaericaexon
TCONS_00047949-exon-scaffold_139-1575043694:115688..115970TCONS_00047949-exon-scaffold_139-1575043694:115688..115970Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_139supercontigscaffold_139:115688..115970 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.475578	0	0	0.526812	0	0	0	0	112.614	92.3315	139.729	143.163	47.7601	56.8257	93.1668	127.514	7.14029	18.2964	72.2936	83.5854	55.1779	41.0436	26.1738	39.1639	0	0	1.30422	5.56761	38.5334	23.6632
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047949 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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