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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047940 ID=TCONS_00047940|Name=TCONS_00047940|organism=Clytia hemisphaerica|type=transcript|length=882bp
TCGATATAACGACTTGGATGCTTCGTCACCGTACGTTTCTTTTTTGGCGT
CAGCTGTCTGTCGTAACGCGTAGTTGGCACAGCTAGGTGACGATGTGGCG
CCAAATAGATGAACACAGATTTGGTAGTCGACGGGCTCCTTCGATAGATC
GCCATCTGGCCACCAAATGAATCTAAGGTTGTCGTGAAATTCTTCTGGTA
CACGTACTTGGTAGAACATTGATTCGATGTCTGCCATGACTGCCACTGGA
TATTGTCGAAATCTTAACAGCACTCCGATGAGTTGATTGGTGAGGTCTGG
TCCTTGGATCAGTTCTTGGTTGAGACANAATCTTAACAGCACTCCGATGA
GTTGATTGGTGAGGTCTGGTCCTTGGATCAGTTCTTGGTTGAGACAGTAT
CCTTGATATTTCGCTGTGTAATCGAATACGACGCGGATTTTGTCTGGTTT
GCgcgggtggtatacaccatggtgAGGGATGTACCATGTCTTGTTTAGTG
TTGGTGAATTTGAAGCAAGTTTGACGTAGCCTTTTTCGATGTTTGTTTGC
ATAAAGGCTTTGTAATCGTTGAACATTCGATCGTTCTTTAGAAGTCGCTG
TTTTAACCATGCTGCTCGTTGAAGACATTGCGATCGATTGTTGGGTATTA
ATCTTGTGTGGATCTCTCAGTGGAAGTGGTAATTAGTAGTGCCCATCCTT
GTATTTGATGTCTTTCATGATTTCGAGAAAGCGTTTGTCGTCTTGAGACA
GGGATATAAGCTGGCTGGATTCGTGGAAGTTTAAGGTGGATGCCTTGATG
GTCATTTCCTTTAACGACAAATCTTTAAATGACTCTCTGACTTGAAAGTA
TTGATCGGTTCGATCTTGAGCTTGAATTCGAT Run BLAST on NCBI protein sequence of TCONS_00047940-protein >TCONS_00047940-protein ID=TCONS_00047940-protein|Name=TCONS_00047940-protein|organism=Clytia hemisphaerica|type=polypeptide|length=192bp
MFNDYKAFMQTNIEKGYVKLASNSPTLNKTWYIPHHGVYHPRKPDKIRVV
FDYTAKYQGYCLNQELIQGPDLTNQLIGVLLRXCLNQELIQGPDLTNQLI
GVLLRFRQYPVAVMADIESMFYQVRVPEEFHDNLRFIWWPDGDLSKEPVD
YQICVHLFGATSSPSCANYALRQTADAKKETYGDEASKSLYR Run BLAST on NCBI transcript from alignment at scaffold_139:25122..26003 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047940 ID=TCONS_00047940|Name=TCONS_00047940|organism=Clytia hemisphaerica|type=transcript|length=882bp|location=Sequence derived from alignment at scaffold_139:25122..26003 (Clytia hemisphaerica)
ATCGAATTCAAGCTCAAGATCGAACCGATCAATACTTTCAAGTCAGAGAG
TCATTTAAAGATTTGTCGTTAAAGGAAATGACCATCAAGGCATCCACCTT
AAACTTCCACGAATCCAGCCAGCTTATATCCCTGTCTCAAGACGACAAAC
GCTTTCTCGAAATCATGAAAGACATCAAATACAAGGATGGGCACTACTAA
TTACCACTTCCACTGAGAGATCCACACAAGATTAATACCCAACAATCGAT
CGCAATGTCTTCAACGAGCAGCATGGTTAAAACAGCGACTTCTAAAGAAC
GATCGAATGTTCAACGATTACAAAGCCTTTATGCAAACAAACATCGAAAA
AGGCTACGTCAAACTTGCTTCAAATTCACCAACACTAAACAAGACATGGT
ACATCCCTcaccatggtgtataccacccgcGCAAACCAGACAAAATCCGC
GTCGTATTCGATTACACAGCGAAATATCAAGGATACTGTCTCAACCAAGA
ACTGATCCAAGGACCAGACCTCACCAATCAACTCATCGGAGTGCTGTTAA
GATTNTGTCTCAACCAAGAACTGATCCAAGGACCAGACCTCACCAATCAA
CTCATCGGAGTGCTGTTAAGATTTCGACAATATCCAGTGGCAGTCATGGC
AGACATCGAATCAATGTTCTACCAAGTACGTGTACCAGAAGAATTTCACG
ACAACCTTAGATTCATTTGGTGGCCAGATGGCGATCTATCGAAGGAGCCC
GTCGACTACCAAATCTGTGTTCATCTATTTGGCGCCACATCGTCACCTAG
CTGTGCCAACTACGCGTTACGACAGACAGCTGACGCCAAAAAAGAAACGT
ACGGTGACGAAGCATCCAAGTCGTTATATCGA Coding sequence (CDS) from alignment at scaffold_139:25122..26003 >TCONS_00047940 ID=TCONS_00047940|Name=TCONS_00047940|organism=Clytia hemisphaerica|type=CDS|length=576bp|location=Sequence derived from alignment at scaffold_139:25122..26003 (Clytia hemisphaerica)
ATGTTCAACGATTACAAAGCCTTTATGCAAACAAACATCGAAAAAGGCTA
CGTCAAACTTGCTTCAAATTCACCAACACTAAACAAGACATGGTACATCC
CTcaccatggtgtataccacccgcGCAAACCAGACAAAATCCGCGTCGTA
TTCGATTACACAGCGAAATATCAAGGATACTGTCTCAACCAAGAACTGAT
CCAAGGACCAGACCTCACCAATCAACTCATCGGAGTGCTGTTAAGATTNT
GTCTCAACCAAGAACTGATCCAAGGACCAGACCTCACCAATCAACTCATC
GGAGTGCTGTTAAGATTTCGACAATATCCAGTGGCAGTCATGGCAGACAT
CGAATCAATGTTCTACCAAGTACGTGTACCAGAAGAATTTCACGACAACC
TTAGATTCATTTGGTGGCCAGATGGCGATCTATCGAAGGAGCCCGTCGAC
TACCAAATCTGTGTTCATCTATTTGGCGCCACATCGTCACCTAGCTGTGC
CAACTACGCGTTACGACAGACAGCTGACGCCAAAAAAGAAACGTACGGTG
ACGAAGCATCCAAGTCGTTATATCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047940-exon-scaffold_139-1491911889:25122..26003 | TCONS_00047940-exon-scaffold_139-1491911889:25122..26003 | Clytia hemisphaerica | exon |
| TCONS_00047940-exon-scaffold_139-1510915933:25122..26003 | TCONS_00047940-exon-scaffold_139-1510915933:25122..26003 | Clytia hemisphaerica | exon |
| TCONS_00047940-exon-scaffold_139-1575043694:25122..26003 | TCONS_00047940-exon-scaffold_139-1575043694:25122..26003 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_139 | supercontig | scaffold_139:25122..26003 . |
Blast
The following BLAST results are available for this feature:
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