TCONS_00047939 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047939
Unique NameTCONS_00047939
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length976

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047939 ID=TCONS_00047939|Name=TCONS_00047939|organism=Clytia hemisphaerica|type=transcript|length=976bp
TCAGTATCAAGTTTATTCAGTACATTcacttgatttcaaaattttgacat
caTTTTCAACAAGAAGAACAAGTTTATTTGTGGGTCTATCATATGTATTT
GACCCTTGTTTGATTTGAACAGATCTAACGTGACCATCTTGACTCTCGTG
TAATTATTGAACAAGAGCGAGTTTCCAACAGTTTCTGTTGGTGTCCTCTT
TCATAAGAACTACATCACCAATCGCTAGATCTCGTCTGGTATTGCACCAT
TTTGATCTANNNNNNNCTCTCGTGTAATTTTTGAACAAGAGCGAGTTTCC
AACAGTTTCTGTTGGTGTCCTCTTTCATAAGAACTACATCACCAATCGCT
AGATCTCGTCTGGTATTGCACCATTTTGATCGAGCTTGTAAATTTGCTAA
ATACTCTTTACGCCACCTGGACCAAAATTCGTTTGCGATGTGTTGTACGC
GTCTCCATCGTCGCCTGCAGAACACGTCTTCTTTGACAAAGTGACCAGGA
GGAGGCATTACCACGCTGGATTTCATCGTCAAGATGTTGGATGGTGATAT
CGGCGTTAGACTAGTTGGATCGTTGATACATTCAACTGTCAGCGGGCGTG
AATTGATTGTAGCTTCGACTTCTACCAACAGTGTACGGAATGATTCGTCA
TTGAGTGATTCACCATGTGTCATCATCAGTGAAGATAGAATTGCTCGTGT
TGTTCTGATCATCCTCTCCCACACACCCCCGTGATTGCTTGCTGTAGGTG
TGTTGTGCTTCCAAGAGATGAAGTCAGCACCTAAACTCAAAAGAAAATTA
GTAATGGCTTGTTCATCCATCTCTTGAAGAGCCTTGGCAAGCTCATTCCT
TGCACCAACGAAATTGGTGCCGTTGTCGCATCGTAGTAGACGGATGTTGC
CTCTTCTGCCGATGAATCGTCTCAAGCATTGGATGAACGAGTCTGTATCC
ATCGTGGATACACACTCAAGATGAAC
Run BLAST on NCBI

protein sequence of TCONS_00047939-protein

>TCONS_00047939-protein ID=TCONS_00047939-protein|Name=TCONS_00047939-protein|organism=Clytia hemisphaerica|type=polypeptide|length=239bp
VHLECVSTMDTDSFIQCLRRFIGRRGNIRLLRCDNGTNFVGARNELAKAL
QEMDEQAITNFLLSLGADFISWKHNTPTASNHGGVWERMIRTTRAILSSL
MMTHGESLNDESFRTLLVEVEATINSRPLTVECINDPTSLTPISPSNILT
MKSSVVMPPPGHFVKEDVFCRRRWRRVQHIANEFWSRWRKEYLANLQARS
KWCNTRRDLAIGDVVLMKEDTNRNCWKLALVQKLHEXXX
Run BLAST on NCBI

transcript from alignment at scaffold_139:19822..20797

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047939 ID=TCONS_00047939|Name=TCONS_00047939|organism=Clytia hemisphaerica|type=transcript|length=976bp|location=Sequence derived from alignment at scaffold_139:19822..20797 (Clytia hemisphaerica)
GTTCATCTTGAGTGTGTATCCACGATGGATACAGACTCGTTCATCCAATG CTTGAGACGATTCATCGGCAGAAGAGGCAACATCCGTCTACTACGATGCG ACAACGGCACCAATTTCGTTGGTGCAAGGAATGAGCTTGCCAAGGCTCTT CAAGAGATGGATGAACAAGCCATTACTAATTTTCTTTTGAGTTTAGGTGC TGACTTCATCTCTTGGAAGCACAACACACCTACAGCAAGCAATCACGGGG GTGTGTGGGAGAGGATGATCAGAACAACACGAGCAATTCTATCTTCACTG ATGATGACACATGGTGAATCACTCAATGACGAATCATTCCGTACACTGTT GGTAGAAGTCGAAGCTACAATCAATTCACGCCCGCTGACAGTTGAATGTA TCAACGATCCAACTAGTCTAACGCCGATATCACCATCCAACATCTTGACG ATGAAATCCAGCGTGGTAATGCCTCCTCCTGGTCACTTTGTCAAAGAAGA CGTGTTCTGCAGGCGACGATGGAGACGCGTACAACACATCGCAAACGAAT TTTGGTCCAGGTGGCGTAAAGAGTATTTAGCAAATTTACAAGCTCGATCA AAATGGTGCAATACCAGACGAGATCTAGCGATTGGTGATGTAGTTCTTAT GAAAGAGGACACCAACAGAAACTGTTGGAAACTCGCTCTTGTTCAAAAAT TACACGAGAGNNNNNNNTAGATCAAAATGGTGCAATACCAGACGAGATCT AGCGATTGGTGATGTAGTTCTTATGAAAGAGGACACCAACAGAAACTGTT GGAAACTCGCTCTTGTTCAATAATTACACGAGAGTCAAGATGGTCACGTT AGATCTGTTCAAATCAAACAAGGGTCAAATACATATGATAGACCCACAAA TAAACTTGTTCTTCTTGTTGAAAAtgatgtcaaaattttgaaatcaagtg AATGTACTGAATAAACTTGATACTGA

Coding sequence (CDS) from alignment at scaffold_139:19822..20797

>TCONS_00047939 ID=TCONS_00047939|Name=TCONS_00047939|organism=Clytia hemisphaerica|type=CDS|length=720bp|location=Sequence derived from alignment at scaffold_139:19822..20797 (Clytia hemisphaerica)
GTTCATCTTGAGTGTGTATCCACGATGGATACAGACTCGTTCATCCAATG
CTTGAGACGATTCATCGGCAGAAGAGGCAACATCCGTCTACTACGATGCG
ACAACGGCACCAATTTCGTTGGTGCAAGGAATGAGCTTGCCAAGGCTCTT
CAAGAGATGGATGAACAAGCCATTACTAATTTTCTTTTGAGTTTAGGTGC
TGACTTCATCTCTTGGAAGCACAACACACCTACAGCAAGCAATCACGGGG
GTGTGTGGGAGAGGATGATCAGAACAACACGAGCAATTCTATCTTCACTG
ATGATGACACATGGTGAATCACTCAATGACGAATCATTCCGTACACTGTT
GGTAGAAGTCGAAGCTACAATCAATTCACGCCCGCTGACAGTTGAATGTA
TCAACGATCCAACTAGTCTAACGCCGATATCACCATCCAACATCTTGACG
ATGAAATCCAGCGTGGTAATGCCTCCTCCTGGTCACTTTGTCAAAGAAGA
CGTGTTCTGCAGGCGACGATGGAGACGCGTACAACACATCGCAAACGAAT
TTTGGTCCAGGTGGCGTAAAGAGTATTTAGCAAATTTACAAGCTCGATCA
AAATGGTGCAATACCAGACGAGATCTAGCGATTGGTGATGTAGTTCTTAT
GAAAGAGGACACCAACAGAAACTGTTGGAAACTCGCTCTTGTTCAAAAAT
TACACGAGAGNNNNNNNTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030500XLOC_030500Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047939-exon-scaffold_139-1491911889:19822..20797TCONS_00047939-exon-scaffold_139-1491911889:19822..20797Clytia hemisphaericaexon
TCONS_00047939-exon-scaffold_139-1510915933:19822..20797TCONS_00047939-exon-scaffold_139-1510915933:19822..20797Clytia hemisphaericaexon
TCONS_00047939-exon-scaffold_139-1575043694:19822..20797TCONS_00047939-exon-scaffold_139-1575043694:19822..20797Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047939-proteinTCONS_00047939-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_139supercontigscaffold_139:19822..20797 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.409834 0.565422 0.487718 0.288915 0.572138 0.554618 0.560659 0.41113 0.386574 1.02615 0.658974 0.823673 0.263797 0.236673 0.481501 0.0937754 0.0690695 0.0355906 0.181562 0.476487 0 0 0 0 0.9053 0.366866 0 0 0.47082 1.57821
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047939 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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