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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047939 ID=TCONS_00047939|Name=TCONS_00047939|organism=Clytia hemisphaerica|type=transcript|length=976bp
TCAGTATCAAGTTTATTCAGTACATTcacttgatttcaaaattttgacat
caTTTTCAACAAGAAGAACAAGTTTATTTGTGGGTCTATCATATGTATTT
GACCCTTGTTTGATTTGAACAGATCTAACGTGACCATCTTGACTCTCGTG
TAATTATTGAACAAGAGCGAGTTTCCAACAGTTTCTGTTGGTGTCCTCTT
TCATAAGAACTACATCACCAATCGCTAGATCTCGTCTGGTATTGCACCAT
TTTGATCTANNNNNNNCTCTCGTGTAATTTTTGAACAAGAGCGAGTTTCC
AACAGTTTCTGTTGGTGTCCTCTTTCATAAGAACTACATCACCAATCGCT
AGATCTCGTCTGGTATTGCACCATTTTGATCGAGCTTGTAAATTTGCTAA
ATACTCTTTACGCCACCTGGACCAAAATTCGTTTGCGATGTGTTGTACGC
GTCTCCATCGTCGCCTGCAGAACACGTCTTCTTTGACAAAGTGACCAGGA
GGAGGCATTACCACGCTGGATTTCATCGTCAAGATGTTGGATGGTGATAT
CGGCGTTAGACTAGTTGGATCGTTGATACATTCAACTGTCAGCGGGCGTG
AATTGATTGTAGCTTCGACTTCTACCAACAGTGTACGGAATGATTCGTCA
TTGAGTGATTCACCATGTGTCATCATCAGTGAAGATAGAATTGCTCGTGT
TGTTCTGATCATCCTCTCCCACACACCCCCGTGATTGCTTGCTGTAGGTG
TGTTGTGCTTCCAAGAGATGAAGTCAGCACCTAAACTCAAAAGAAAATTA
GTAATGGCTTGTTCATCCATCTCTTGAAGAGCCTTGGCAAGCTCATTCCT
TGCACCAACGAAATTGGTGCCGTTGTCGCATCGTAGTAGACGGATGTTGC
CTCTTCTGCCGATGAATCGTCTCAAGCATTGGATGAACGAGTCTGTATCC
ATCGTGGATACACACTCAAGATGAAC Run BLAST on NCBI protein sequence of TCONS_00047939-protein >TCONS_00047939-protein ID=TCONS_00047939-protein|Name=TCONS_00047939-protein|organism=Clytia hemisphaerica|type=polypeptide|length=239bp
VHLECVSTMDTDSFIQCLRRFIGRRGNIRLLRCDNGTNFVGARNELAKAL
QEMDEQAITNFLLSLGADFISWKHNTPTASNHGGVWERMIRTTRAILSSL
MMTHGESLNDESFRTLLVEVEATINSRPLTVECINDPTSLTPISPSNILT
MKSSVVMPPPGHFVKEDVFCRRRWRRVQHIANEFWSRWRKEYLANLQARS
KWCNTRRDLAIGDVVLMKEDTNRNCWKLALVQKLHEXXX Run BLAST on NCBI transcript from alignment at scaffold_139:19822..20797 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047939 ID=TCONS_00047939|Name=TCONS_00047939|organism=Clytia hemisphaerica|type=transcript|length=976bp|location=Sequence derived from alignment at scaffold_139:19822..20797 (Clytia hemisphaerica)
GTTCATCTTGAGTGTGTATCCACGATGGATACAGACTCGTTCATCCAATG
CTTGAGACGATTCATCGGCAGAAGAGGCAACATCCGTCTACTACGATGCG
ACAACGGCACCAATTTCGTTGGTGCAAGGAATGAGCTTGCCAAGGCTCTT
CAAGAGATGGATGAACAAGCCATTACTAATTTTCTTTTGAGTTTAGGTGC
TGACTTCATCTCTTGGAAGCACAACACACCTACAGCAAGCAATCACGGGG
GTGTGTGGGAGAGGATGATCAGAACAACACGAGCAATTCTATCTTCACTG
ATGATGACACATGGTGAATCACTCAATGACGAATCATTCCGTACACTGTT
GGTAGAAGTCGAAGCTACAATCAATTCACGCCCGCTGACAGTTGAATGTA
TCAACGATCCAACTAGTCTAACGCCGATATCACCATCCAACATCTTGACG
ATGAAATCCAGCGTGGTAATGCCTCCTCCTGGTCACTTTGTCAAAGAAGA
CGTGTTCTGCAGGCGACGATGGAGACGCGTACAACACATCGCAAACGAAT
TTTGGTCCAGGTGGCGTAAAGAGTATTTAGCAAATTTACAAGCTCGATCA
AAATGGTGCAATACCAGACGAGATCTAGCGATTGGTGATGTAGTTCTTAT
GAAAGAGGACACCAACAGAAACTGTTGGAAACTCGCTCTTGTTCAAAAAT
TACACGAGAGNNNNNNNTAGATCAAAATGGTGCAATACCAGACGAGATCT
AGCGATTGGTGATGTAGTTCTTATGAAAGAGGACACCAACAGAAACTGTT
GGAAACTCGCTCTTGTTCAATAATTACACGAGAGTCAAGATGGTCACGTT
AGATCTGTTCAAATCAAACAAGGGTCAAATACATATGATAGACCCACAAA
TAAACTTGTTCTTCTTGTTGAAAAtgatgtcaaaattttgaaatcaagtg
AATGTACTGAATAAACTTGATACTGA Coding sequence (CDS) from alignment at scaffold_139:19822..20797 >TCONS_00047939 ID=TCONS_00047939|Name=TCONS_00047939|organism=Clytia hemisphaerica|type=CDS|length=720bp|location=Sequence derived from alignment at scaffold_139:19822..20797 (Clytia hemisphaerica)
GTTCATCTTGAGTGTGTATCCACGATGGATACAGACTCGTTCATCCAATG
CTTGAGACGATTCATCGGCAGAAGAGGCAACATCCGTCTACTACGATGCG
ACAACGGCACCAATTTCGTTGGTGCAAGGAATGAGCTTGCCAAGGCTCTT
CAAGAGATGGATGAACAAGCCATTACTAATTTTCTTTTGAGTTTAGGTGC
TGACTTCATCTCTTGGAAGCACAACACACCTACAGCAAGCAATCACGGGG
GTGTGTGGGAGAGGATGATCAGAACAACACGAGCAATTCTATCTTCACTG
ATGATGACACATGGTGAATCACTCAATGACGAATCATTCCGTACACTGTT
GGTAGAAGTCGAAGCTACAATCAATTCACGCCCGCTGACAGTTGAATGTA
TCAACGATCCAACTAGTCTAACGCCGATATCACCATCCAACATCTTGACG
ATGAAATCCAGCGTGGTAATGCCTCCTCCTGGTCACTTTGTCAAAGAAGA
CGTGTTCTGCAGGCGACGATGGAGACGCGTACAACACATCGCAAACGAAT
TTTGGTCCAGGTGGCGTAAAGAGTATTTAGCAAATTTACAAGCTCGATCA
AAATGGTGCAATACCAGACGAGATCTAGCGATTGGTGATGTAGTTCTTAT
GAAAGAGGACACCAACAGAAACTGTTGGAAACTCGCTCTTGTTCAAAAAT
TACACGAGAGNNNNNNNTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047939-exon-scaffold_139-1491911889:19822..20797 | TCONS_00047939-exon-scaffold_139-1491911889:19822..20797 | Clytia hemisphaerica | exon |
| TCONS_00047939-exon-scaffold_139-1510915933:19822..20797 | TCONS_00047939-exon-scaffold_139-1510915933:19822..20797 | Clytia hemisphaerica | exon |
| TCONS_00047939-exon-scaffold_139-1575043694:19822..20797 | TCONS_00047939-exon-scaffold_139-1575043694:19822..20797 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_139 | supercontig | scaffold_139:19822..20797 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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