TCONS_00047938 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047938
Unique NameTCONS_00047938
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length690

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047938 ID=TCONS_00047938|Name=TCONS_00047938|organism=Clytia hemisphaerica|type=transcript|length=690bp
NTCTGGACACCATTTCATTCCTAACGCACGATCGGATGGAAGTTGTGTAC
GAGACATATCGAGGTCTTTCAGGGATTTGGCTCTTTCTTGGTCTGGAATG
GTTGCAAGGAATTCTCGTTCGTTTGACATGAATTTGGTTAGTCTGAAGCC
TCCCGAATGACACATTTTCGTTATGTCAGAAGTCGTTTGGATGGCGGTTG
ATGCATTTGAATACGACTTAAGAAGATCGTCGACATAGAAGTTTCGATAT
AACGACTTTGATGCTTCGTTACCGTACGTTTCTTTGTTGGCGTCAGCTGT
CTGTCGTAACGCGTAGTTGGCACAGCTTGGTGACGATGTGGCGCCAAATA
GATGAACACACATTTGGTAGTCGACGGGCTCCTTCGATAGATCGCCATCT
GGCCACCAAATGAATCTAAGGTTGTCGTGAAATTCTTCTGGTACACGTAC
TTGGTAGAACATTGATTCGATGTCTGCCATGACTGCCACTGGATATTGTC
GAAATCTTAACAGCACTCCGATGAGTTGATTGGTGAGGTCTGGTCCTTGG
ATCAGTTCTTGGTTGAGACAATATCCTTGATATTTTGTGCAATCGAATAC
GACGCGGATTTTGTCTGGTTTGCgcgggtggtatacaccatggtgAGGGA
TGTACCATGTTTTGTTTGGTGTTGGTGAATTTGAAGCAAG
Run BLAST on NCBI

protein sequence of TCONS_00047938-protein

>TCONS_00047938-protein ID=TCONS_00047938-protein|Name=TCONS_00047938-protein|organism=Clytia hemisphaerica|type=polypeptide|length=230bp
LASNSPTPNKTWYIPHHGVYHPRKPDKIRVVFDCTKYQGYCLNQELIQGP
DLTNQLIGVLLRFRQYPVAVMADIESMFYQVRVPEEFHDNLRFIWWPDGD
LSKEPVDYQMCVHLFGATSSPSCANYALRQTADANKETYGNEASKSLYRN
FYVDDLLKSYSNASTAIQTTSDITKMCHSGGFRLTKFMSNEREFLATIPD
QERAKSLKDLDMSRTQLPSDRALGMKWCPX
Run BLAST on NCBI

transcript from alignment at scaffold_139:16938..17627

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047938 ID=TCONS_00047938|Name=TCONS_00047938|organism=Clytia hemisphaerica|type=transcript|length=690bp|location=Sequence derived from alignment at scaffold_139:16938..17627 (Clytia hemisphaerica)
CTTGCTTCAAATTCACCAACACCAAACAAAACATGGTACATCCCTcacca
tggtgtataccacccgcGCAAACCAGACAAAATCCGCGTCGTATTCGATT
GCACAAAATATCAAGGATATTGTCTCAACCAAGAACTGATCCAAGGACCA
GACCTCACCAATCAACTCATCGGAGTGCTGTTAAGATTTCGACAATATCC
AGTGGCAGTCATGGCAGACATCGAATCAATGTTCTACCAAGTACGTGTAC
CAGAAGAATTTCACGACAACCTTAGATTCATTTGGTGGCCAGATGGCGAT
CTATCGAAGGAGCCCGTCGACTACCAAATGTGTGTTCATCTATTTGGCGC
CACATCGTCACCAAGCTGTGCCAACTACGCGTTACGACAGACAGCTGACG
CCAACAAAGAAACGTACGGTAACGAAGCATCAAAGTCGTTATATCGAAAC
TTCTATGTCGACGATCTTCTTAAGTCGTATTCAAATGCATCAACCGCCAT
CCAAACGACTTCTGACATAACGAAAATGTGTCATTCGGGAGGCTTCAGAC
TAACCAAATTCATGTCAAACGAACGAGAATTCCTTGCAACCATTCCAGAC
CAAGAAAGAGCCAAATCCCTGAAAGACCTCGATATGTCTCGTACACAACT
TCCATCCGATCGTGCGTTAGGAATGAAATGGTGTCCAGAN

Coding sequence (CDS) from alignment at scaffold_139:16938..17627

>TCONS_00047938 ID=TCONS_00047938|Name=TCONS_00047938|organism=Clytia hemisphaerica|type=CDS|length=690bp|location=Sequence derived from alignment at scaffold_139:16938..17627 (Clytia hemisphaerica)
CTTGCTTCAAATTCACCAACACCAAACAAAACATGGTACATCCCTcacca
tggtgtataccacccgcGCAAACCAGACAAAATCCGCGTCGTATTCGATT
GCACAAAATATCAAGGATATTGTCTCAACCAAGAACTGATCCAAGGACCA
GACCTCACCAATCAACTCATCGGAGTGCTGTTAAGATTTCGACAATATCC
AGTGGCAGTCATGGCAGACATCGAATCAATGTTCTACCAAGTACGTGTAC
CAGAAGAATTTCACGACAACCTTAGATTCATTTGGTGGCCAGATGGCGAT
CTATCGAAGGAGCCCGTCGACTACCAAATGTGTGTTCATCTATTTGGCGC
CACATCGTCACCAAGCTGTGCCAACTACGCGTTACGACAGACAGCTGACG
CCAACAAAGAAACGTACGGTAACGAAGCATCAAAGTCGTTATATCGAAAC
TTCTATGTCGACGATCTTCTTAAGTCGTATTCAAATGCATCAACCGCCAT
CCAAACGACTTCTGACATAACGAAAATGTGTCATTCGGGAGGCTTCAGAC
TAACCAAATTCATGTCAAACGAACGAGAATTCCTTGCAACCATTCCAGAC
CAAGAAAGAGCCAAATCCCTGAAAGACCTCGATATGTCTCGTACACAACT
TCCATCCGATCGTGCGTTAGGAATGAAATGGTGTCCAGAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030499XLOC_030499Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047938-exon-scaffold_139-1491911889:16938..17627TCONS_00047938-exon-scaffold_139-1491911889:16938..17627Clytia hemisphaericaexon
TCONS_00047938-exon-scaffold_139-1510915933:16938..17627TCONS_00047938-exon-scaffold_139-1510915933:16938..17627Clytia hemisphaericaexon
TCONS_00047938-exon-scaffold_139-1575043694:16938..17627TCONS_00047938-exon-scaffold_139-1575043694:16938..17627Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047938-proteinTCONS_00047938-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_139supercontigscaffold_139:16938..17627 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.656898	0.960687	0.995482	0.326069	0.567106	0.4446	0.361493	0.547631	0.54399	0.393796	0.0071279	0	0.304652	0.0999151	0.339502	0.156953	0	0.0567525	0.313627	0.361116	0	0.104353	0	0.00365403	0.784577	0.979269	0.101137	0	0.884913	1.62581
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047938 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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