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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047935 ID=TCONS_00047935|Name=TCONS_00047935|organism=Clytia hemisphaerica|type=transcript|length=1845bp CTTTCTTAGAAAtgtcaatgttatttttttacgAATGAAATCTTAATTTG TCTGATTTTTTATCCTGTTTGTGTTTTTGTGTTTACAGTATTTGtgttaa aattttgatgacatttTATTAACTTTGTGTGTGTGATGAAGATTTTACTG AAAATCCTTTTGGTTGCTGTTATCGTCAAAAAAACATTAAGTGTGTCCTC AGTAAAACCTGTGAACGGTACAACTTCAATCACAGTACCAGTTGGAAACG ATGCCTTGTTTCAATGGAACATCGTGCTGGAAAACAGTGATCAAGACGTT GGTTTAAAGCTTTTGAATGGAACAACTGAATTATGGACCCAACAGTGGGG TAAAGTTAGTGATGAAGGAAAAGCACTCTTCAAAGACAGATTGACCGTCG AGAAAAGTGTCACCTATCTAAAAGCTACAATCAAAAATGTGGATTTCAAT GATTCTACAATAGAATTGAGAATTACAGGGGCTATTTTGGACAGCGGCTT TACTAAATTATCTGATATTGATTCTACAATAAGCTTGATAGTTCAAgGTG GGCCATTTTATTGTGGAGATAAACTCGAATCAAAATATATCGTTGGACCG AATGCTAGACCAAGATTTAAACTGTGTATTCAAAGCAATCCAGCACCAGA GATATCGTACAAATTTCCAAGCTCAAGTAGAGCAAGTGTAAAAGGGATGG TTACAGGACCAAGTTGGGATAAACAATATACCATAGAGTTTGAGCTTCCC CCAATAGCTGCTGTGAATTGTGGTCGTGAGTTATTATATACAATAACTTC ACCAAATTTACAAGGAAGCATACCTTTGACTGGAAAAAGCACAATAATTT TGACTGATATGCCTTTGAATGTCacaatttcatcattttcataCGAAAAC AAAGTACCTAAAGTCACTTGGAGGGAGATCAACGCTGGGTTGTGTAGCAA CGAGATTGCTTACTACATTGAAGTTTCCAACCAGACAGCGACAATAACAA AAGGACCAGTGACCGGGACATCTTTATTCATTGATGAAATAGGCCAAGAA CCAAAACTTATTAAGATGTGGGCTGAATATGACTCTCCAACGGGGAAGAA AACTGGAGCGAAAAGTGTAGTTTGGTTTACTAAAACCACTACAACGACCA CGACAACAACGACGACAATAAAACCGGAGATCCTAACAAGTTCAGTACCA AGTGCAACTAAAGATGAAAAAGGGTTATGGCTTGGAATAGGCATTGTCAT CGGGTTGGTTATTGGGCTATTACTAGCTCTGGTAATCTTTCATATTTTGC GTTTTTACCAGAGACAAAACAATACCAAAGGAAATCAACCCAATGAACTG ACGGAGAAAGGACCAACTTATGAAGGTGTCAACGACAATGTTTTTGTGAA TACAGAGTCGCCTAATGAACAGgATTATGAGTTTGTTGCAGATCATGGGA ATTCAAAGACAGCGAACGCTGCAACCTATCAAGAACTCAATGCTATATCA CCGCCAGATTTGACTTACACCAAACTTCAAGGAAAATCACATTACGAAAT ATAATATGAATAGCAAAAGGAAATCCCATGCTTTTTAGGCTTATTTACAT AGCTTTACGGTCGAAACGAAGGAAAGAAATGAACGTAGCCTAGAAATATT ATTAGGACATAACGAATGTGAATGCAGCCTGAAAAAACAATGAATTGATA ATACTTATTTAAAATAGACTaagttaacaatattttaaCGAAATTTTTTC ATGCACCTATCCAACAGTAGCGGTGGTCAGCTTTTAAAGAGACTAGAAAA TGATTTAAGTAAATTCCAACCAAAATTGTTGAGACATTATATCCC Run BLAST on NCBI transcript from alignment at scaffold_139:732544..739617- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047935 ID=TCONS_00047935|Name=TCONS_00047935|organism=Clytia hemisphaerica|type=transcript|length=7074bp|location=Sequence derived from alignment at scaffold_139:732544..739617- (Clytia hemisphaerica) CTTTCTTAGAAATGTCAATGTTATTTTTTTACGAATGAAATCTTAATTTG
TCTGATTTTTTATCCTGTTTGTGTTTTTGTGTTTACAGTATTTGTGTTAA
AATTTTGATGACATTTTATTAACTTTGTGTGTGTGATGAAGATTTTACTG
AAAATCCTTTTGGTTGCTGTTATCGTCAAAAAAAGTAACTTATTATTTAA
ACCTTTAGACCCGCTCATCTTTTTAAAGCACACTGAAAAAATGGTACATG
GGGAGGGGGTCCTGGTACTCAGGCAAGGGTATGTATGAAGGTACTCTTTT
TAGTACCTCGAAAGTCCCTCAAAGGGGTACCAATTCGTAGGTTACTTTTT
AAAGGAACATGCATAATCTTTGAAGCCTTTCAATCTTTTTTCGAAAAATG
CTCTTAAAATGTTTTTACTTTTGGGTTTATTTCATGATTAAGATTAAAAC
GCGGTGAAATCATTTTTGTCGTAGCGGGTGATTTTCCCTGAACTTAACAC
TTTGCTTCGTTGAATATCACCTTCCTCCAGTATGGTGGCCCATAAGTGCC
AAGTAATTTTTTATTGAAAAACTCAGAAAAATATTTTTTTTATAAATGAA
AATAACTTTCATTTTACAATTTTAATCTCATGGTTGATTGAAATTCGATT
GACGTTTTTGCTTACGTTAATTTGTAATTTCCCGCGAACTTGTAATTTCC
CTCCTAGCTTTTGTAATTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATT
TTAGTAAGTGAGGACAGCGCTAAATTCGAATTTCCCACTGTAATTTTTTT
GAGTCCAAAATCGGACTCACAGCTCTGACCCGTCAAGTATTATTCATCAG
ATTTAAAAAAAAATACGCAGACGGGTTCCTGTCTAAATTTTTTCTTAATA
TGCAGCATGCGAGCATAAAAGGAAAAATGTTGAGAAGAGAGGAAATACAC
TTTTTTTATATAAGAACAATTTAAGAACAGTGGAGAGGCTGAAGTTAGAG
AGTTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNCTAAAATCCTCTAAATAGTAAAGTAAAT
AGCCAAAACTTGTTTTTTACCTTGGAAAAAATAAGAACAAAATAAGAACA
ATTCAAGGCTCAAAGTGCCAAAGAATTAAGAACAGCCGAGCCTCAGCAAA
AATTTACTGGTTCTTATAAAAAAAGAGTGTAATAAGAGGGAAGTTTTATT
TACTTCCAACCCCTTTCAAAGTTGCCGCCATATGCTTTAATATTTTTGGC
TCCGAGGAAACCCCAATGTGACCCCCCCCCTAAAACAAACAANAAAAAAA
GAGTGTAATAAGAGGGAAGTTTTATTTACTTCCAACCCCTTTCATGTTGC
CGCTATATGCTTTAATATTTTTGGCTCCGAGGAAACCCCAATGTGACCCC
CCCCCTAAAACAAACAACTGGTTCGCTCTATTATCAAAAGAAACTTTATC
TGTTGAAATTTACTCATTTCTATGAGTGGCCTCAATGGGCTGTCAGAATA
ATTCTTTTAAAATAATTTAAAATTGATTTTAAAATGACATGGCCTCGATG
GGCTGAGTTGGAAATCGTTTTTGAAAACAAACCCGTTTTTAATTTGAAAC
GAAACTAGAAAGTAAATCAATTTTGAAATCAAAATTTAGTTCAAAACTTA
AATTAAAAGCTATTGCAAAAATGAATGTGAAAAGTAAATTATTCTGAATT
TTTTTTATAGAAATGTCAAAACAATTTAACTTGGCTCCCATGGGCCACCA
TACTCCAGTTAATAAATGGCAATAACGAATATAAGGTCAGGACATGTAAT
ATCTGATTGATGCCGGTTTTCTCAGATATTTTCTCTAGTATTTAAATATA
TCCTTATGTTATGATTTCAGCATTAAGTGTGTCCTCAGTAAAACCTGTGA
ACGGTACAACTTCAATCACAGTACCAGTTGGAAACGATGCCTTGTTTCAA
TGGAACATCGTGCTGGAAAACAGTGATCAAGACGTTGGTTTAAAGCTTTT
GAATGGAACAACTGAATTATGGACCCAACAGTGGGGTAAAGTTAGTGATG
AAGGAAAAGCACTCTTCAAAGACAGATTGACCGTCGAGAAAAGTGTCACC
TATCTAAAAGCTACAATCAAAAATGTGGATTTCAATGATTCTACAATAGA
ATTGAGAATTACAGGGGCTATTTTGGACAGCGGCTTTACTAAATTATCTG
ATATTGATTCTACAATAAGCTTGATAGTTCAAGGTAAGAAAATGATCTAT
GTTCAGAGGATTATATTTCATATATATGCCCTTGTCTCGATGACCCAGTG
ATGACTTTTTTTGTGTTTTTCAAAATCTTCGCAAACCTAGTCACCAGCCT
CCTTTTTATTCAGTTCTGGCATCGACTGGACAAAAATCCTCTCTAAAGGG
ACTCGGTTAAGTTATGGGTATGGCTGGTATTTTTTGCTGACGTAATCAGA
ATTTCAATTTTTTTTTTCAAATGATCGACTTAAGTGAGATATATATTAAG
TGAAAGTTTGAAGACAATTGGATAAACAATCCTTGAGAAATTCAATTTTT
AGTTTCTATGACGTCATCGATTATGACATCATAATCAATTTTTGTATTTT
CTTGCGAAAATCAGTGAAAAACAATTAGGTAACACATCAGGCTAGAAACT
ACATTATAGTACCCTTCATATTCAGTCATTTTTTGGTCGTTTTGTGTCGG
CTAATGCGATCTAAAAATTATAGTAATTTTAAGACATGCCATAACTTACC
CGAGGAGTTTTTCTTAAGTACTGCTTGAAAATTATATCATTACACCAAAC
ACTATTATCTTTAAATTGATACTGTATCGTATATTGGCTTAACTTTCCTT
CTGGCGTATGTTTACGGGATATTTCCGCTGTTCTTTTTTCCTGCCATACT
GAAAAGTATCAAGTCAAAAATCCAGCGAGATCCTAAGATTTACAGCGATT
TTCCAAGTGAAAAAGAGAGTCTACAGATACTTGCAATAGGATGAGATGTA
TTTTTCTCCAACCAGCAAAACGAGAATTGTACTCTATGTGGTTGACGGCT
ACACTTAGGTATATAAAAAATGTTAGCAAAAGCCTCTTACCACATCAAAC
ACATTAAGCGGAATTGAAGCCTCTTAGTAAAGAAAGGTGCAAAATTATAT
TTTGAATTATCAAAACTATCAAAGTAATTTCCATGTCGGTCGACCGTATT
TTCTAGGTGGGCCATTTTATTGTGGAGATAAACTCGAATCAAAATATATC
GTTGGACCGAATGCTAGACCAAGATTTAAACTGTGTATTCAAAGCAATCC
AGCACCAGAGATATCGTACAAATTTCCAAGCTCAAGTAGAGCAAGTGTAA
AAGGGATGGTTACAGGACCAAGTTGGGATAAACAATATACCATAGAGTTT
GAGCTTCCCCCAATAGCTGCTGTGAATTGTGGTCGTGAGTTATTATATAC
AATAACTTCACCAAATTTACAAGGAAGCATACCTTTGACTGGAAAAAGCA
CAATAATTTTGACTGGTGAGTTAGTTAATCTAGCAATTTTGGGCACTTTC
CTTGACAGCCGACCCCGACCTCCGTCCCCGTGCCCCATTTTGTTTGATTT
ACCTAGAAAATATTTTTGGAAACATCAATTTATATAACTTTCTAACACAT
TCAATTTCTGAAGGGCTGTGAAGGTGAATGAATTTTCATTCTTCAGAAAT
CTTACTTCGTTTTTCTTGAATAGATATGCCTTTGAATGTCACAATTTCAT
CATTTTCATACGAAAACAAAGTACCTAAAGTCACTTGGAGGGAGATCAAC
GCTGGGTTGTGTAGCAACGAGATTGCTTACTACATTGAAGTTTCCAACCA
GACAGCGACAATAACAAAAGGACCAGTGACCGGGACATCTTTATTCATTG
ATGAAATAGGCCAAGAACCAAAACTTATTAAGATGTGGGCTGAATATGAC
TCTCCAACGGGGAAGAAAACTGGAGCGAAAAGTGTAGTTTGGTTTACTAA
AACCACTACAACGACCACGACAACAACGACGACAATAAAACCGGAGATCC
TAACAAGTTCAGTACCAAGTGCAACTAGTATGTATACTGTGTGTCCTTGA
GATAAACATCGAAAAGAGAAAAATAATTAAAGACAAAGAAATCGAAAACT
GGGTAAATGGAAAATTTGCAAATTATTATGAAGAGTTTTATAGTCGGGGA
GAGGCTAAAACTGCAATGTTTTTTCTTTGCACCCATTTTTTTTAATGATG
ATACAGCAAAATTAAAACCATTTTCAAAATCTTCTGTTTTTCTAGAAGAT
GAAAAAGGGTTATGGCTTGGAATAGGCATTGTCATCGGGTTGGTTATTGG
GCTATTACTAGCTCTGGTAATCTTTCATATTTTGCGTTTTTACCAGAGAC
AAAACAATACCAAAGGTAAGCAAGAATTTATGACAAATTTGTAGTTTCAA
GCATAATATACTTATTTTCAATGAACACGAGCCCAAACTCCAACCTTACT
ACACATCGGTATTATATCTGTCAATATTTTTAACTTTGACGTTTGCTGTT
CATCTAGGAAATCAACCCAATGAACTGACGGAGAAAGGACCAACTTATGA
AGGTGTCAACGACAATGTTTTTGTGAATACAGAGTCGCCTAATGAACAGG
TACACATTGATTGTATATCTCAATAGTAGTATAAAGGATTCCAATGGGAG
CTATTTTATCTAAAATGAAAATGTTGATATTCGTTTATCATGAGCTGCAA
CATTTGCTCGTCTATCAGCTTTTTGCTCTGTAAAGATTTGCAAGACAAAG
ACAGTTTAAGTATTAGTGAGGGATGTTGCTTGTAGAACCATGAGCTCCAT
TTTTACCAAAGATATCCAGTAAAGAATCTATTATTCAGAACCGCTAGGCT
TTAACTCCTATCACTTCTTTTCCTGGATTGCCACACTTAAAGCTTGGGGA
CATGAGAAGATTTTTTTGCGTTGGTGTAGTGCAACATGCTCCATCGCACA
AACCTGAAACGCTTTTTAATGTTGCTACATAGTACCGTGAAAATCAGAGG
TCAAAATCATGTATTGACACTGTGTCGACGAATCGATTTTCTATTCATCG
CGCAATCAACGAAGTCAAAAGTAACCGTGACGACCATCTGAGATCTTGGA
TGAAGTTCAAAGTTGATATTTTTATTCCCGTCGTTGAAAACACAACTAAA
AAATATCATCAATGCTTTTTAAAGTCAGTGATAGAGAATCATAACATAAA
GTCTGTCTATTATTTCGATTCAATTAAAAGTAACATTTCCATAATTAATA
CACCCCTGTCGGTAGAACTTTTTCCCTCACCCTATTGTTATTATGCTGAT
ATAAGCAAAATTATTTTTCTTTTCCTCTTTCTAAACAATTTTGCTCCCCA
TTTATGTCAATCCAATGTGAAAAACCTTGTGAATTAAAATTGATGAGTAA
GCAAATGATATCACTCTTATTTAAAAACGAAACCTTTAAGTATTGGTTCA
GTATGAATCCTCTCCATCTATTGTCCTGCCCAGGCTATGAACCTTCTGAA
ATAACTTTTTGACATCGGTTGATATTCAACGGTATTCTAAAGTTTGGTCA
CTAAAACTTGGAAAAATTTTCTAAATAACCCTTTAATTTATCATTTTTCA
GGATTATGAGTTTGTTGCAGATCATGGGAATTCAAAGACAGCGAACGCTG
CAACCTATCAAGAACTCAATGCTATATCACCGCCAGATTTGACTTACACC
AAACTTCAAGGAAAATCACATTACGAAATATAATATGAATAGCAAAAGGA
AATCCCATGCTTTTTAGGCTTATTTACATAGCTTTACGGTCGAAACGAAG
GAAAGAAATGAACGTAGCCTAGAAATATTATTAGGACATAACGAATGTGA
ATGCAGCCTGAAAAAACAATGAATTGATAATACTTATTTAAAATAGACTA
AGTTAACAATATTTTAACGAAATTTTTTCATGCACCTATCCAACAGTAGC
GGTGGTCAGCTTTTAAAGAGACTAGAAAATGATTTAAGTAAATTCCAACC
AAAATTGTTGAGACATTATATCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00047935-exon-scaffold_139-1575043694:739434..739617 | TCONS_00047935-exon-scaffold_139-1575043694:739434..739617 | Clytia hemisphaerica | exon |
TCONS_00047935-exon-scaffold_139-1575043694:736385..736747 | TCONS_00047935-exon-scaffold_139-1575043694:736385..736747 | Clytia hemisphaerica | exon |
TCONS_00047935-exon-scaffold_139-1575043694:735103..735411 | TCONS_00047935-exon-scaffold_139-1575043694:735103..735411 | Clytia hemisphaerica | exon |
TCONS_00047935-exon-scaffold_139-1575043694:734541..734894 | TCONS_00047935-exon-scaffold_139-1575043694:734541..734894 | Clytia hemisphaerica | exon |
TCONS_00047935-exon-scaffold_139-1575043694:734203..734322 | TCONS_00047935-exon-scaffold_139-1575043694:734203..734322 | Clytia hemisphaerica | exon |
TCONS_00047935-exon-scaffold_139-1575043694:733969..734060 | TCONS_00047935-exon-scaffold_139-1575043694:733969..734060 | Clytia hemisphaerica | exon |
TCONS_00047935-exon-scaffold_139-1575043694:732544..732966 | TCONS_00047935-exon-scaffold_139-1575043694:732544..732966 | Clytia hemisphaerica | exon |
TCONS_00047935-exon-scaffold_139-1510915933:739434..739617 | TCONS_00047935-exon-scaffold_139-1510915933:739434..739617 | Clytia hemisphaerica | exon |
TCONS_00047935-exon-scaffold_139-1510915933:736385..736747 | TCONS_00047935-exon-scaffold_139-1510915933:736385..736747 | Clytia hemisphaerica | exon |
TCONS_00047935-exon-scaffold_139-1510915933:735103..735411 | TCONS_00047935-exon-scaffold_139-1510915933:735103..735411 | Clytia hemisphaerica | exon |
TCONS_00047935-exon-scaffold_139-1510915933:734541..734894 | TCONS_00047935-exon-scaffold_139-1510915933:734541..734894 | Clytia hemisphaerica | exon |
TCONS_00047935-exon-scaffold_139-1510915933:734203..734322 | TCONS_00047935-exon-scaffold_139-1510915933:734203..734322 | Clytia hemisphaerica | exon |
TCONS_00047935-exon-scaffold_139-1510915933:733969..734060 | TCONS_00047935-exon-scaffold_139-1510915933:733969..734060 | Clytia hemisphaerica | exon |
TCONS_00047935-exon-scaffold_139-1510915933:732544..732966 | TCONS_00047935-exon-scaffold_139-1510915933:732544..732966 | Clytia hemisphaerica | exon |
TCONS_00047935-exon-scaffold_139-1491911889:739434..739617 | TCONS_00047935-exon-scaffold_139-1491911889:739434..739617 | Clytia hemisphaerica | exon |
TCONS_00047935-exon-scaffold_139-1491911889:736385..736747 | TCONS_00047935-exon-scaffold_139-1491911889:736385..736747 | Clytia hemisphaerica | exon |
TCONS_00047935-exon-scaffold_139-1491911889:735103..735411 | TCONS_00047935-exon-scaffold_139-1491911889:735103..735411 | Clytia hemisphaerica | exon |
TCONS_00047935-exon-scaffold_139-1491911889:734541..734894 | TCONS_00047935-exon-scaffold_139-1491911889:734541..734894 | Clytia hemisphaerica | exon |
TCONS_00047935-exon-scaffold_139-1491911889:734203..734322 | TCONS_00047935-exon-scaffold_139-1491911889:734203..734322 | Clytia hemisphaerica | exon |
TCONS_00047935-exon-scaffold_139-1491911889:733969..734060 | TCONS_00047935-exon-scaffold_139-1491911889:733969..734060 | Clytia hemisphaerica | exon |
TCONS_00047935-exon-scaffold_139-1491911889:732544..732966 | TCONS_00047935-exon-scaffold_139-1491911889:732544..732966 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_139 | supercontig | scaffold_139:732544..739617 - |
Blast
The following BLAST results are available for this feature:
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