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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047934 ID=TCONS_00047934|Name=TCONS_00047934|organism=Clytia hemisphaerica|type=transcript|length=1193bp
AGTATTTGtgttaaaattttgatgacatttTATTAACTTTGTGTGTGTGA
TGAAGATTTTACTGAAAATCCTTTTGGTTGCTGTTATCGTCAAAAAAACA
TTAAGTGTGTCCTCAGTAAAACCTGTGAACGGTACAACTTCAATCACAGT
ACCAGTTGGAAACGATGCCTTGTTTCAATGGAACATCGTGCTGGAAAACA
GTGATCAAGACGTTGGTTTAAAGCTTTTGAATGGAACAACTGAATTATGG
ACCCAACAGTGGGGTAAAGTTAGTGATGAAGGAAAAGCACTCTTCAAAGA
CAGATTGACCGTCGAGAAAAGTGTCACCTATCTAAAAGCTACAATCAAAA
ATGTGGATTTCAATGATTCTACAATAGAATTGAGAATTACAGGGGCTATT
TTGGACAGCGGCTTTACTAAATTATCTGATATTGATTCTACAATAAGCTT
GATAGTTCAAgGTGGGCCATTTTATTGTGGAGATAAACTCGAATCAAAAT
ATATCGTTGGACCGAATGCTAGACCAAGATTTAAACTGTGTATTCAAAGC
AATCCAGCACCAGAGATATCGTACAAATTTCCAAGCTCAAGTAGAGCAAG
TGTAAAAGGGATGGTTACAGGACCAAGTTGGGATAAACAATATACCATAG
AGTTTGAGCTTCCCCCAATAGCTGCTGTGAATTGTGGTCGTGAGTTATTA
TATACAATAACTTCACCAAATTTACAAGGAAGCATACCTTTGACTGGAAA
AAGCACAATAATTTTGACTGgATTATGAGTTTGTTGCAGATCATGGGAAT
TCAAAGACAGCGAACGCTGCAACCTATCAAGAACTCAATGCTATATCACC
GCCAGATTTGACTTACACCAAACTTCAAGGAAAATCACATTACGAAATAT
AATATGAATAGCAAAAGGAAATCCCATGCTTTTTAGGCTTATTTACATAG
CTTTACGGTCGAAACGAAGGAAAGAAATGAACGTAGCCTAGAAATATTAT
TAGGACATAACGAATGTGAATGCAGCCTGAAAAAACAATGAATTGATAAT
ACTTATTTAAAATAGACTaagttaacaatattttaaCGAAATTTTTTCAT
GCACCTATCCAACAGTAGCGGTGGTCAGCTTTTAAAGAGACTAGAAAATG
ATTTAAGTAAATTCCAACCAAAATTGTTGAGACATTATATCCC Run BLAST on NCBI transcript from alignment at scaffold_139:732544..739531- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047934 ID=TCONS_00047934|Name=TCONS_00047934|organism=Clytia hemisphaerica|type=transcript|length=6988bp|location=Sequence derived from alignment at scaffold_139:732544..739531- (Clytia hemisphaerica)
AGTATTTGTGTTAAAATTTTGATGACATTTTATTAACTTTGTGTGTGTGA
TGAAGATTTTACTGAAAATCCTTTTGGTTGCTGTTATCGTCAAAAAAAGT
AACTTATTATTTAAACCTTTAGACCCGCTCATCTTTTTAAAGCACACTGA
AAAAATGGTACATGGGGAGGGGGTCCTGGTACTCAGGCAAGGGTATGTAT
GAAGGTACTCTTTTTAGTACCTCGAAAGTCCCTCAAAGGGGTACCAATTC
GTAGGTTACTTTTTAAAGGAACATGCATAATCTTTGAAGCCTTTCAATCT
TTTTTCGAAAAATGCTCTTAAAATGTTTTTACTTTTGGGTTTATTTCATG
ATTAAGATTAAAACGCGGTGAAATCATTTTTGTCGTAGCGGGTGATTTTC
CCTGAACTTAACACTTTGCTTCGTTGAATATCACCTTCCTCCAGTATGGT
GGCCCATAAGTGCCAAGTAATTTTTTATTGAAAAACTCAGAAAAATATTT
TTTTTATAAATGAAAATAACTTTCATTTTACAATTTTAATCTCATGGTTG
ATTGAAATTCGATTGACGTTTTTGCTTACGTTAATTTGTAATTTCCCGCG
AACTTGTAATTTCCCTCCTAGCTTTTGTAATTTCCNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTTTTATTTTAGTAAGTGAGGACAGCGCTAAATTCGAATTTCCC
ACTGTAATTTTTTTGAGTCCAAAATCGGACTCACAGCTCTGACCCGTCAA
GTATTATTCATCAGATTTAAAAAAAAATACGCAGACGGGTTCCTGTCTAA
ATTTTTTCTTAATATGCAGCATGCGAGCATAAAAGGAAAAATGTTGAGAA
GAGAGGAAATACACTTTTTTTATATAAGAACAATTTAAGAACAGTGGAGA
GGCTGAAGTTAGAGAGTTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAAAATCCTCTAA
ATAGTAAAGTAAATAGCCAAAACTTGTTTTTTACCTTGGAAAAAATAAGA
ACAAAATAAGAACAATTCAAGGCTCAAAGTGCCAAAGAATTAAGAACAGC
CGAGCCTCAGCAAAAATTTACTGGTTCTTATAAAAAAAGAGTGTAATAAG
AGGGAAGTTTTATTTACTTCCAACCCCTTTCAAAGTTGCCGCCATATGCT
TTAATATTTTTGGCTCCGAGGAAACCCCAATGTGACCCCCCCCCTAAAAC
AAACAANAAAAAAAGAGTGTAATAAGAGGGAAGTTTTATTTACTTCCAAC
CCCTTTCATGTTGCCGCTATATGCTTTAATATTTTTGGCTCCGAGGAAAC
CCCAATGTGACCCCCCCCCTAAAACAAACAACTGGTTCGCTCTATTATCA
AAAGAAACTTTATCTGTTGAAATTTACTCATTTCTATGAGTGGCCTCAAT
GGGCTGTCAGAATAATTCTTTTAAAATAATTTAAAATTGATTTTAAAATG
ACATGGCCTCGATGGGCTGAGTTGGAAATCGTTTTTGAAAACAAACCCGT
TTTTAATTTGAAACGAAACTAGAAAGTAAATCAATTTTGAAATCAAAATT
TAGTTCAAAACTTAAATTAAAAGCTATTGCAAAAATGAATGTGAAAAGTA
AATTATTCTGAATTTTTTTTATAGAAATGTCAAAACAATTTAACTTGGCT
CCCATGGGCCACCATACTCCAGTTAATAAATGGCAATAACGAATATAAGG
TCAGGACATGTAATATCTGATTGATGCCGGTTTTCTCAGATATTTTCTCT
AGTATTTAAATATATCCTTATGTTATGATTTCAGCATTAAGTGTGTCCTC
AGTAAAACCTGTGAACGGTACAACTTCAATCACAGTACCAGTTGGAAACG
ATGCCTTGTTTCAATGGAACATCGTGCTGGAAAACAGTGATCAAGACGTT
GGTTTAAAGCTTTTGAATGGAACAACTGAATTATGGACCCAACAGTGGGG
TAAAGTTAGTGATGAAGGAAAAGCACTCTTCAAAGACAGATTGACCGTCG
AGAAAAGTGTCACCTATCTAAAAGCTACAATCAAAAATGTGGATTTCAAT
GATTCTACAATAGAATTGAGAATTACAGGGGCTATTTTGGACAGCGGCTT
TACTAAATTATCTGATATTGATTCTACAATAAGCTTGATAGTTCAAGGTA
AGAAAATGATCTATGTTCAGAGGATTATATTTCATATATATGCCCTTGTC
TCGATGACCCAGTGATGACTTTTTTTGTGTTTTTCAAAATCTTCGCAAAC
CTAGTCACCAGCCTCCTTTTTATTCAGTTCTGGCATCGACTGGACAAAAA
TCCTCTCTAAAGGGACTCGGTTAAGTTATGGGTATGGCTGGTATTTTTTG
CTGACGTAATCAGAATTTCAATTTTTTTTTTCAAATGATCGACTTAAGTG
AGATATATATTAAGTGAAAGTTTGAAGACAATTGGATAAACAATCCTTGA
GAAATTCAATTTTTAGTTTCTATGACGTCATCGATTATGACATCATAATC
AATTTTTGTATTTTCTTGCGAAAATCAGTGAAAAACAATTAGGTAACACA
TCAGGCTAGAAACTACATTATAGTACCCTTCATATTCAGTCATTTTTTGG
TCGTTTTGTGTCGGCTAATGCGATCTAAAAATTATAGTAATTTTAAGACA
TGCCATAACTTACCCGAGGAGTTTTTCTTAAGTACTGCTTGAAAATTATA
TCATTACACCAAACACTATTATCTTTAAATTGATACTGTATCGTATATTG
GCTTAACTTTCCTTCTGGCGTATGTTTACGGGATATTTCCGCTGTTCTTT
TTTCCTGCCATACTGAAAAGTATCAAGTCAAAAATCCAGCGAGATCCTAA
GATTTACAGCGATTTTCCAAGTGAAAAAGAGAGTCTACAGATACTTGCAA
TAGGATGAGATGTATTTTTCTCCAACCAGCAAAACGAGAATTGTACTCTA
TGTGGTTGACGGCTACACTTAGGTATATAAAAAATGTTAGCAAAAGCCTC
TTACCACATCAAACACATTAAGCGGAATTGAAGCCTCTTAGTAAAGAAAG
GTGCAAAATTATATTTTGAATTATCAAAACTATCAAAGTAATTTCCATGT
CGGTCGACCGTATTTTCTAGGTGGGCCATTTTATTGTGGAGATAAACTCG
AATCAAAATATATCGTTGGACCGAATGCTAGACCAAGATTTAAACTGTGT
ATTCAAAGCAATCCAGCACCAGAGATATCGTACAAATTTCCAAGCTCAAG
TAGAGCAAGTGTAAAAGGGATGGTTACAGGACCAAGTTGGGATAAACAAT
ATACCATAGAGTTTGAGCTTCCCCCAATAGCTGCTGTGAATTGTGGTCGT
GAGTTATTATATACAATAACTTCACCAAATTTACAAGGAAGCATACCTTT
GACTGGAAAAAGCACAATAATTTTGACTGGTGAGTTAGTTAATCTAGCAA
TTTTGGGCACTTTCCTTGACAGCCGACCCCGACCTCCGTCCCCGTGCCCC
ATTTTGTTTGATTTACCTAGAAAATATTTTTGGAAACATCAATTTATATA
ACTTTCTAACACATTCAATTTCTGAAGGGCTGTGAAGGTGAATGAATTTT
CATTCTTCAGAAATCTTACTTCGTTTTTCTTGAATAGATATGCCTTTGAA
TGTCACAATTTCATCATTTTCATACGAAAACAAAGTACCTAAAGTCACTT
GGAGGGAGATCAACGCTGGGTTGTGTAGCAACGAGATTGCTTACTACATT
GAAGTTTCCAACCAGACAGCGACAATAACAAAAGGACCAGTGACCGGGAC
ATCTTTATTCATTGATGAAATAGGCCAAGAACCAAAACTTATTAAGATGT
GGGCTGAATATGACTCTCCAACGGGGAAGAAAACTGGAGCGAAAAGTGTA
GTTTGGTTTACTAAAACCACTACAACGACCACGACAACAACGACGACAAT
AAAACCGGAGATCCTAACAAGTTCAGTACCAAGTGCAACTAGTATGTATA
CTGTGTGTCCTTGAGATAAACATCGAAAAGAGAAAAATAATTAAAGACAA
AGAAATCGAAAACTGGGTAAATGGAAAATTTGCAAATTATTATGAAGAGT
TTTATAGTCGGGGAGAGGCTAAAACTGCAATGTTTTTTCTTTGCACCCAT
TTTTTTTAATGATGATACAGCAAAATTAAAACCATTTTCAAAATCTTCTG
TTTTTCTAGAAGATGAAAAAGGGTTATGGCTTGGAATAGGCATTGTCATC
GGGTTGGTTATTGGGCTATTACTAGCTCTGGTAATCTTTCATATTTTGCG
TTTTTACCAGAGACAAAACAATACCAAAGGTAAGCAAGAATTTATGACAA
ATTTGTAGTTTCAAGCATAATATACTTATTTTCAATGAACACGAGCCCAA
ACTCCAACCTTACTACACATCGGTATTATATCTGTCAATATTTTTAACTT
TGACGTTTGCTGTTCATCTAGGAAATCAACCCAATGAACTGACGGAGAAA
GGACCAACTTATGAAGGTGTCAACGACAATGTTTTTGTGAATACAGAGTC
GCCTAATGAACAGGTACACATTGATTGTATATCTCAATAGTAGTATAAAG
GATTCCAATGGGAGCTATTTTATCTAAAATGAAAATGTTGATATTCGTTT
ATCATGAGCTGCAACATTTGCTCGTCTATCAGCTTTTTGCTCTGTAAAGA
TTTGCAAGACAAAGACAGTTTAAGTATTAGTGAGGGATGTTGCTTGTAGA
ACCATGAGCTCCATTTTTACCAAAGATATCCAGTAAAGAATCTATTATTC
AGAACCGCTAGGCTTTAACTCCTATCACTTCTTTTCCTGGATTGCCACAC
TTAAAGCTTGGGGACATGAGAAGATTTTTTTGCGTTGGTGTAGTGCAACA
TGCTCCATCGCACAAACCTGAAACGCTTTTTAATGTTGCTACATAGTACC
GTGAAAATCAGAGGTCAAAATCATGTATTGACACTGTGTCGACGAATCGA
TTTTCTATTCATCGCGCAATCAACGAAGTCAAAAGTAACCGTGACGACCA
TCTGAGATCTTGGATGAAGTTCAAAGTTGATATTTTTATTCCCGTCGTTG
AAAACACAACTAAAAAATATCATCAATGCTTTTTAAAGTCAGTGATAGAG
AATCATAACATAAAGTCTGTCTATTATTTCGATTCAATTAAAAGTAACAT
TTCCATAATTAATACACCCCTGTCGGTAGAACTTTTTCCCTCACCCTATT
GTTATTATGCTGATATAAGCAAAATTATTTTTCTTTTCCTCTTTCTAAAC
AATTTTGCTCCCCATTTATGTCAATCCAATGTGAAAAACCTTGTGAATTA
AAATTGATGAGTAAGCAAATGATATCACTCTTATTTAAAAACGAAACCTT
TAAGTATTGGTTCAGTATGAATCCTCTCCATCTATTGTCCTGCCCAGGCT
ATGAACCTTCTGAAATAACTTTTTGACATCGGTTGATATTCAACGGTATT
CTAAAGTTTGGTCACTAAAACTTGGAAAAATTTTCTAAATAACCCTTTAA
TTTATCATTTTTCAGGATTATGAGTTTGTTGCAGATCATGGGAATTCAAA
GACAGCGAACGCTGCAACCTATCAAGAACTCAATGCTATATCACCGCCAG
ATTTGACTTACACCAAACTTCAAGGAAAATCACATTACGAAATATAATAT
GAATAGCAAAAGGAAATCCCATGCTTTTTAGGCTTATTTACATAGCTTTA
CGGTCGAAACGAAGGAAAGAAATGAACGTAGCCTAGAAATATTATTAGGA
CATAACGAATGTGAATGCAGCCTGAAAAAACAATGAATTGATAATACTTA
TTTAAAATAGACTAAGTTAACAATATTTTAACGAAATTTTTTCATGCACC
TATCCAACAGTAGCGGTGGTCAGCTTTTAAAGAGACTAGAAAATGATTTA
AGTAAATTCCAACCAAAATTGTTGAGACATTATATCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047934-exon-scaffold_139-1575043694:739434..739531 | TCONS_00047934-exon-scaffold_139-1575043694:739434..739531 | Clytia hemisphaerica | exon |
| TCONS_00047934-exon-scaffold_139-1575043694:736385..736747 | TCONS_00047934-exon-scaffold_139-1575043694:736385..736747 | Clytia hemisphaerica | exon |
| TCONS_00047934-exon-scaffold_139-1575043694:735103..735411 | TCONS_00047934-exon-scaffold_139-1575043694:735103..735411 | Clytia hemisphaerica | exon |
| TCONS_00047934-exon-scaffold_139-1575043694:732544..732966 | TCONS_00047934-exon-scaffold_139-1575043694:732544..732966 | Clytia hemisphaerica | exon |
| TCONS_00047934-exon-scaffold_139-1510915933:739434..739531 | TCONS_00047934-exon-scaffold_139-1510915933:739434..739531 | Clytia hemisphaerica | exon |
| TCONS_00047934-exon-scaffold_139-1510915933:736385..736747 | TCONS_00047934-exon-scaffold_139-1510915933:736385..736747 | Clytia hemisphaerica | exon |
| TCONS_00047934-exon-scaffold_139-1510915933:735103..735411 | TCONS_00047934-exon-scaffold_139-1510915933:735103..735411 | Clytia hemisphaerica | exon |
| TCONS_00047934-exon-scaffold_139-1510915933:732544..732966 | TCONS_00047934-exon-scaffold_139-1510915933:732544..732966 | Clytia hemisphaerica | exon |
| TCONS_00047934-exon-scaffold_139-1491911889:739434..739531 | TCONS_00047934-exon-scaffold_139-1491911889:739434..739531 | Clytia hemisphaerica | exon |
| TCONS_00047934-exon-scaffold_139-1491911889:736385..736747 | TCONS_00047934-exon-scaffold_139-1491911889:736385..736747 | Clytia hemisphaerica | exon |
| TCONS_00047934-exon-scaffold_139-1491911889:735103..735411 | TCONS_00047934-exon-scaffold_139-1491911889:735103..735411 | Clytia hemisphaerica | exon |
| TCONS_00047934-exon-scaffold_139-1491911889:732544..732966 | TCONS_00047934-exon-scaffold_139-1491911889:732544..732966 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_139 | supercontig | scaffold_139:732544..739531 - |
Blast
The following BLAST results are available for this feature:
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