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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047923 ID=TCONS_00047923|Name=TCONS_00047923|organism=Clytia hemisphaerica|type=transcript|length=1736bp
ATCGAGgatgattttccaccggggacaatattttagccaaattttccagt
gggcaGGGGTCCAAGTGGgcctgtgagaaaggggtgttttaaccattttt
aaggTTCCTGGGACTTGATTTGAATAGATAGTTTTTCAACAAACTAATTC
TTCATACTAATAAAGTATTGAACATGGTTTTTCAGCCTTCAAGAAAGCTA
AGACATTACTCACACACTTTAcacttaaatattttcttcctaGATCAGAA
TCAACTAGGAAGAAAATTCAATTGGGTATCAAGTGACTTACCGCAATTCG
TTTCCCATTTAAATTTATACCCCCTGAAATATTTATATAGACCATACTAG
gaacatttagtaattttataCACACAAAATTAGCGGGTTCTTCAGTCATT
AATGCAGTATAAAAGAGCAACACCAAAAGTAAGGCTTCATCATTAATCAA
TAAAGCAATCTATCGAAGGCTCGCTGAACTGATTGAACGagcgaaaaaaa
caatgaagatTACATTTCTTGCTTTCTTGTTTGTGGCAACAATTGGCCTA
GCAACATGTTCTCAAGGGTCATCAATGTCCCCAACAATGAAAGCACCAGA
GACTAATGAAATAAATGCTGACCATGGTGAGATTGATGGAGAAAACGAGG
AGGAGGGTGTTATGACTCAAGAACTCAAAGATGAAATTGATCAAGAAATT
TTGGAAGGTGAAAACGACGGCAACGAAGAAGATGACGATGAGGAAGACCT
TGCAAAAAGTCGTGAAAAACGTTTCATTCGGTTCCGTAGAATTAGAGTAC
CACGAATTCGTATTCGCCTTCGAAGGGTCTGGGATCGAGTGAAATGCCCC
ACAAGATGTGCTTCCTACCGCTACTGTATGATCAAAGCGCCTGGTATTGC
AAAATTGGCTTGcaacaaaatcaagaaaaattgcAGATGTGGATTTTTCG
GATGAACTGTTCTATTTGAAGCGACTTGGCGTAAAattattttatctttt
caaaaattagacgGGTTAGATTTATAGAATATATAAACTTTGATAGATAA
ATTTCAATACTTTGAAAGACGTAAACCTTGTCCTCTTTCGCCATGTTTTA
ACCTTAATGTTTAATAGAGTAAGGTACAGTAAATAAAACATTTAGGAAAC
AATTTCATCCTTGTGTGCAAAATTACATTCGACAAGTTTTAAATTTCCTG
TTTAAAAGCTCTTGTACTCTTTCTCGAGTATTTATAGAAGATTTTTggat
gatattttttttcgccaAAAAGCCTGAATACttctttaatcggattaaat
tttgcgagattaaagcaaaaaaatcgccaaattttcttgagtcagcgttt
tgaaaatttttgcgtagatttaatttcgcgaaaatggcaaaagttTGTGA
AAtcacgaaaattaatccgattaaagtagtaGGGTGCCAAGCTTAGCATC
TTCGGGACTCAAAGGCGTGTGATTGAACACCCTCTCAAGTCTAAAAGTCC
GATCTACTTCCCAACAAATCACATTTGGTTGCATTCCTGATAAGGGTTAC
TATACAGGTAGTGAAAATGAATCGATAATACTCTCCACTTACTTTCATAA
AGCCATTGTTTCACATCCAATCGATCAACGATCGCTTCAAATACAAAATC
AACATCAATCAATGCTTCCTGTAGTGTTTCGAATGTCTCTACGTCACCCT
ACGAAAATAATGTCACATTGATCCAGTTAATTAAAG Run BLAST on NCBI protein sequence of TCONS_00047923-protein >TCONS_00047923-protein ID=TCONS_00047923-protein|Name=TCONS_00047923-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
MKITFLAFLFVATIGLATCSQGSSMSPTMKAPETNEINADHGEIDGENEE
EGVMTQELKDEIDQEILEGENDGNEEDDDEEDLAKSREKRFIRFRRIRVP
RIRIRLRRVWDRVKCPTRCASYRYCMIKAPGIAKLACNKIKKNCRCGFFG Run BLAST on NCBI transcript from alignment at scaffold_139:505651..508366- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047923 ID=TCONS_00047923|Name=TCONS_00047923|organism=Clytia hemisphaerica|type=transcript|length=2716bp|location=Sequence derived from alignment at scaffold_139:505651..508366- (Clytia hemisphaerica)
ATCGAGGATGATTTTCCACCGGGGACAATATTTTAGCCAAATTTTCCAGT
GGGCAGGGGTCCAAGTGGGCCTGTGAGAAAGGGGTGTTTTAACCATTTTT
AAGGTTCCTGGGACTTGATTTGAATAGATAGTTTTTCAACAAACTAATTC
TTCATACTAATAAAGTATTGAACATGGTTTTTCAGCCTTCAAGAAAGCTA
AGACATTACTCACACACTTTACACTTAAATATTTTCTTCCTAGATCAGAA
TCAACTAGGAAGAAAATTCAATTGGGTATCAAGTGACTTACCGCAATTCG
TTTCCCATTTAAATTTATACCCCCTGAAATATTTATATAGACCATACTAG
GAACATTTAGTAATTTTATACACACAAAATTAGCGGGTTCTTCAGTCATT
AATGCAGTATAAAAGAGCAACACCAAAAGTAAGGCTTCATCATTAATCAA
TAAAGCAATCTATCGAAGGCTCGCTGAACTGATTGAACGAGCGAAAAAAA
CAATGAAGATTACATTTCTTGCTTTCTTGTTTGTGGCAACAATTGGCCTA
GCAACATGTAAGTTCTATTTTCATTTGGTTCTTGGTTAGGCTAGAACAAA
ATTCTTGACTATGACTAGTGTACGTTTTTATCTTAAAAAGAAACAATAAG
GAAACATGTCCAAAATTTTCAAGAACAACTTTAGAACAATCTGAGCGTCG
GGAGCGGAGCATTTGGCGAGGTCGTCATTTTGGAGAAAAAAAAATTAAAA
CCCAAATAACAAAAAAGCTACTCAAAGTTGAAAAATATAATTAAGAATGA
GAAACAAAAAGCAAAAGCATATTACCATATACTACAGGGCCACTTAATCG
CACTATCCAGTCTATAAAAAAGCTTTAAGTGGACCCCGGGCTACGGGAGC
GGAGGCTTGTAAATGATTCTCCTTTCATACCCATGCCCCTTATCTATAAA
GATCTTCTGTTTTTCATGAACCTCAGCAAACCTGTCCCATGTTTGCCTAA
TGTGTAGGAATCAGTTCTAGAGGCTGATTTGAAATTTTCGGCGAGTTGAA
AACGATTCGATTCAAAATCCTCAAAATCTTTCCGCACTCTAAATCTCCCA
TTCATTCCAGGTTCTCAAGGGTCATCAATGTCCCCAACAATGAAAGCACC
AGAGACTAATGAAATAAATGCTGACCATGGTGAGATTGATGGAGAAAACG
AGGAGGAGGGTGTTATGACTCAAGAACTCAAAGATGAAATTGATCAAGGT
ATGGTTAGAATGATCTTTTTATCGAAATGTTTTTCAAAAATCCTTAAAGT
GAAAACAATTTGAAGTTTTTGGATTCCTTAGAGATATTTTGCAAACATTT
AAGCCACGGCTACCCCCCCCCTGGTTCGACCATCAATATGGCTAAACTGA
GATATGGAGGGACTAAAGAAAATGTAGGGTTTTTTGTGGTGTTCTGATAT
TCCTTAATATACTTATTTTTTTTTTTTCTTGGAAGAAAATTTAGAACGTT
CAGTAAATTATTTCATCAAATTGGAAAAATTCAAGTGGTTGCTTACATCT
CTAATTCCATCCTCTATTATTCGGATCTTTTTTAAATGCGAAAATATTTA
GTCCCTTGAAGATCGAATTGGAAAGAGTCAACTATATAACATTATTACAA
TTACATTTTTCTTAAACTTCCACAGAAATTTTGGAAGGTGAAAACGACGG
CAACGAAGAAGATGACGATGAGGAAGACCTTGCAAAAAGTCGTGAAAAAC
GTTTCATTCGGTTCCGTAGAATTAGAGTACCACGAATTCGTATTCGCCTT
CGAAGGGTCTGGGATCGAGTGAAATGCCCCACAAGATGTGCTTCCTACCG
CTACTGTATGATCAAAGCGCCTGGTATTGCAAAATTGGCTTGCAACAAAA
TCAAGAAAAATTGCAGATGTGGATTTTTCGGATGAACTGTTCTATTTGAA
GCGACTTGGCGTAAAATTATTTTATCTTTTCAAAAATTAGACGGGTTAGA
TTTATAGAATATATAAACTTTGATAGATAAATTTCAATACTTTGAAAGAC
GTAAACCTTGTCCTCTTTCGCCATGTTTTAACCTTAATGTTTAATAGAGT
AAGGTACAGTAAATAAAACATTTAGGAAACAATTTCATCCTTGTGTGCAA
AATTACATTCGACAAGTTTTAAATTTCCTGTTTAAAAGCTCTTGTACTCT
TTCTCGAGTATTTATAGAAGATTTTTGGATGATATTTTTTTTCGCCAAAA
AGCCTGAATACTTCTTTAATCGGATTAAATTTTGCGAGATTAAAGCAAAA
AAATCGCCAAATTTTCTTGAGTCAGCGTTTTGAAAATTTTTGCGTAGATT
TAATTTCGCGAAAATGGCAAAAGTTTGTGAAATCACGAAAATTAATCCGA
TTAAAGTAGTAGGGTGCCAAGCTTAGCATCTTCGGGACTCAAAGGCGTGT
GATTGAACACCCTCTCAAGTCTAAAAGTCCGATCTACTTCCCAACAAATC
ACATTTGGTTGCATTCCTGATAAGGGTTACTATACAGGTAGTGAAAATGA
ATCGATAATACTCTCCACTTACTTTCATAAAGCCATTGTTTCACATCCAA
TCGATCAACGATCGCTTCAAATACAAAATCAACATCAATCAATGCTTCCT
GTAGTGTTTCGAATGTCTCTACGTCACCCTACGAAAATAATGTCACATTG
ATCCAGTTAATTAAAG Coding sequence (CDS) from alignment at scaffold_139:505651..508366- >TCONS_00047923 ID=TCONS_00047923|Name=TCONS_00047923|organism=Clytia hemisphaerica|type=CDS|length=1359bp|location=Sequence derived from alignment at scaffold_139:505651..508366- (Clytia hemisphaerica)
AAATTTTGGAAGGTGAAAACGACGGCAACGAAGAAGATGACGATGAGGAA
GACCTTGCAAAAAGTCGTGAAAAACGTTTCATTCGGTTCCGTAGAATTAG
AGTACCACGAATTCGTATTCGCCTTCGAAGGGTCTGGGATCGAGTGAAAT
GCCCCACAAGATGTGCTTCCTACCGCTACTGTATGATCAAAGCGCCTGGT
ATTGCAAAATTGGCTTGCAACAAAATCAAGAAAAATTGCAGATGTGGATT
TTTCGGATGAGTTCTCAAGGGTCATCAATGTCCCCAACAATGAAAGCACC
AGAGACTAATGAAATAAATGCTGACCATGGTGAGATTGATGGAGAAAACG
AGGAGGAGGGTGTTATGACTCAAGAACTCAAAGATGAAATTGATCAAGAT
GAAGATTACATTTCTTGCTTTCTTGTTTGTGGCAACAATTGGCCTAGCAA
CATAAATTTTGGAAGGTGAAAACGACGGCAACGAAGAAGATGACGATGAG
GAAGACCTTGCAAAAAGTCGTGAAAAACGTTTCATTCGGTTCCGTAGAAT
TAGAGTACCACGAATTCGTATTCGCCTTCGAAGGGTCTGGGATCGAGTGA
AATGCCCCACAAGATGTGCTTCCTACCGCTACTGTATGATCAAAGCGCCT
GGTATTGCAAAATTGGCTTGCAACAAAATCAAGAAAAATTGCAGATGTGG
ATTTTTCGGATGAGTTCTCAAGGGTCATCAATGTCCCCAACAATGAAAGC
ACCAGAGACTAATGAAATAAATGCTGACCATGGTGAGATTGATGGAGAAA
ACGAGGAGGAGGGTGTTATGACTCAAGAACTCAAAGATGAAATTGATCAA
GATGAAGATTACATTTCTTGCTTTCTTGTTTGTGGCAACAATTGGCCTAG
CAACATAAATTTTGGAAGGTGAAAACGACGGCAACGAAGAAGATGACGAT
GAGGAAGACCTTGCAAAAAGTCGTGAAAAACGTTTCATTCGGTTCCGTAG
AATTAGAGTACCACGAATTCGTATTCGCCTTCGAAGGGTCTGGGATCGAG
TGAAATGCCCCACAAGATGTGCTTCCTACCGCTACTGTATGATCAAAGCG
CCTGGTATTGCAAAATTGGCTTGCAACAAAATCAAGAAAAATTGCAGATG
TGGATTTTTCGGATGAGTTCTCAAGGGTCATCAATGTCCCCAACAATGAA
AGCACCAGAGACTAATGAAATAAATGCTGACCATGGTGAGATTGATGGAG
AAAACGAGGAGGAGGGTGTTATGACTCAAGAACTCAAAGATGAAATTGAT
CAAGATGAAGATTACATTTCTTGCTTTCTTGTTTGTGGCAACAATTGGCC
TAGCAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047923-exon-scaffold_139-1575043694:507810..508366 | TCONS_00047923-exon-scaffold_139-1575043694:507810..508366 | Clytia hemisphaerica | exon |
| TCONS_00047923-exon-scaffold_139-1575043694:507119..507256 | TCONS_00047923-exon-scaffold_139-1575043694:507119..507256 | Clytia hemisphaerica | exon |
| TCONS_00047923-exon-scaffold_139-1575043694:505651..506691 | TCONS_00047923-exon-scaffold_139-1575043694:505651..506691 | Clytia hemisphaerica | exon |
| TCONS_00047923-exon-scaffold_139-1510915933:507810..508366 | TCONS_00047923-exon-scaffold_139-1510915933:507810..508366 | Clytia hemisphaerica | exon |
| TCONS_00047923-exon-scaffold_139-1510915933:507119..507256 | TCONS_00047923-exon-scaffold_139-1510915933:507119..507256 | Clytia hemisphaerica | exon |
| TCONS_00047923-exon-scaffold_139-1510915933:505651..506691 | TCONS_00047923-exon-scaffold_139-1510915933:505651..506691 | Clytia hemisphaerica | exon |
| TCONS_00047923-exon-scaffold_139-1491911889:507810..508366 | TCONS_00047923-exon-scaffold_139-1491911889:507810..508366 | Clytia hemisphaerica | exon |
| TCONS_00047923-exon-scaffold_139-1491911889:507119..507256 | TCONS_00047923-exon-scaffold_139-1491911889:507119..507256 | Clytia hemisphaerica | exon |
| TCONS_00047923-exon-scaffold_139-1491911889:505651..506691 | TCONS_00047923-exon-scaffold_139-1491911889:505651..506691 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_139 | supercontig | scaffold_139:505651..508366 - |
Blast
The following BLAST results are available for this feature:
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