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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047918 ID=TCONS_00047918|Name=TCONS_00047918|organism=Clytia hemisphaerica|type=transcript|length=1996bpRun BLAST on NCBI protein sequence of TCONS_00047918-protein >TCONS_00047918-protein ID=TCONS_00047918-protein|Name=TCONS_00047918-protein|organism=Clytia hemisphaerica|type=polypeptide|length=553bp WLFTISSILEFMILLITTLKMEQKRYTLLPKQTVDNWVEAIGINKIPDEVRun BLAST on NCBI transcript from alignment at scaffold_139:380139..386547- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047918 ID=TCONS_00047918|Name=TCONS_00047918|organism=Clytia hemisphaerica|type=transcript|length=6409bp|location=Sequence derived from alignment at scaffold_139:380139..386547- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_139:380139..386547- >TCONS_00047918 ID=TCONS_00047918|Name=TCONS_00047918|organism=Clytia hemisphaerica|type=CDS|length=18282bp|location=Sequence derived from alignment at scaffold_139:380139..386547- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00047918 vs. Swiss-Prot (Human)
Match: TAF6L (TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L OS=Homo sapiens GN=TAF6L PE=1 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 2.823e-34 Identity = 96/336 (28.57%), Postives = 172/336 (51.19%), Query Frame = 3
Query: 66 EQKRYTLLPKQTVDNWVEAIGINKIPDEVSEILSEDITYHIRELVHKSIQIMKHSRRSYLSVDDINSALRESDTDPIFGHSGIEPFNFKAFHTKEGAKVCYLDEKDVNLRETAFDSSLPNEAGETSVKANWLVLEG-YNCNSRGHLQKDLEPPLNEVMSKYLQNVTRALISEGDQLRKVALDDLCSNKKLQIIIPHLISFCSTQIKQHTGKETFPSIATHIISTINALVKNHSVILTPYLIQLAKILLFTLME---AKIEA--QHWYLHQKAATVLSLLARRHPHSSPDIREQLLKSYLDTFTDPTSKQMAQLHGALCGITQLGITAITNGLFPKI 1055
E++R+ +P+++V E+ G+ ++ DEV+ +L+ED+ Y +RE S Q MKH++R L+V+D N ALR S + + G+ E + +EG ++ + ++++VNL E A +++P ET+V+ + L+G N +G + + L + + KY VTRA++ + QL KVAL DL +N K+ ++P+ + S E ++ +L +N + L PY+ L +L+ ++E A I HW L AA +LS + H + + +L S DP + + +GA+ G+ LG A+ L+P +
Sbjct: 5 EERRFVEIPRESVRLMAESTGL-ELSDEVAALLAEDVCYRLREATQNSSQFMKHTKRRKLTVEDFNRALRWSSVEAVCGYGSQEALPMRP--AREG-ELYFPEDREVNLVELALATNIPKGCAETAVRVHVSYLDGKGNLAPQGSVPSAVS-SLTDDLLKYYHQVTRAVLGDDPQLMKVALQDLQTNSKIGALLPYFVYVVSGVKSVSHDLEQL----HRLLQVARSLFRNPHLCLGPYVRCLVGSVLYCVLEPLAASINPLNDHWTLRDGAALLLSHIFWTHGDLVSGLYQHILLSLQKILADPV-RPLCCHYGAVVGLHALGWKAVERVLYPHL 330 The following BLAST results are available for this feature:
BLAST of TCONS_00047918 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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