|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047906 ID=TCONS_00047906|Name=TCONS_00047906|organism=Clytia hemisphaerica|type=transcript|length=942bp
GAGAGAATGATAAACCACGTGATCAGCTAATCttagaaatcgaaagtgaa
acttTGTAAGATTTCGAAAAGTAAACAACAAAAATGGCGGCCAGAATTGG
GAAAGTTGCTGCAGACACAAGTGCATTTTTCTTGTGTGATGTACAAGACA
AATTTCGCCCTTTGATCCGATATTTTCCTGAAATCTGCACAGTTGCTAAT
CGTTTATCAGCTGCATCAAAGGCTTTGGATATTCCACTTGTAGTTTCGGA
ACATTATCCAAAAGCCCTTGGAAACACTGTTCCAGAAATTGACACCGGCC
ATGGGACCGTCTTCCCAAAAACCTCCTTTTCAATGGCTGTTAAAGATTTG
AAAGATCATGTCAAAACCGTTAGACCAAACCTCAAATCTGTCATTCTTTA
TGGAATAGAGGCTCAAATGTGCGTTCAACAAACTGCATTAGATTTTCTTG
AAGAAGATTATGATGTCCATGTCATTGCAGATGCAACATCCTCTAGAACT
ATGACTGAGCGCTTGATGGCTTTAGAAAGAATGAAGCAAAGTGGCGCCTT
CATTACTACAAGTGAATCTATCTTGTTTATGTTGCTGAAAGATGCTAAGC
ATGAAAGATTCCGTGAAATTCAAAAGATTATCATGGACTCTGCACCTTAT
CAAGGACTTGTTCCCAATGAATAGGACTTTGATAGTTATTATTAGGGAAT
ATatttttgcacaaaaatgctttaaaattttgataaatacaattttatta
ttttttcatagtcttatataataaaaataaatcagaagGTGAATTTAAAT
CGAAAGAAATGGGTTGaaatactttttataaatagaagTTTGCTAATCCG
TGTCCAGAATCTATCCATTGAACATGCAACCGTTAAACAATCGATCTGTC
AATCATCTTAGAGCCAATATAGacaggtacgagccgggaagt Run BLAST on NCBI protein sequence of TCONS_00047906-protein >TCONS_00047906-protein ID=TCONS_00047906-protein|Name=TCONS_00047906-protein|organism=Clytia hemisphaerica|type=polypeptide|length=196bp
MAARIGKVAADTSAFFLCDVQDKFRPLIRYFPEICTVANRLSAASKALDI
PLVVSEHYPKALGNTVPEIDTGHGTVFPKTSFSMAVKDLKDHVKTVRPNL
KSVILYGIEAQMCVQQTALDFLEEDYDVHVIADATSSRTMTERLMALERM
KQSGAFITTSESILFMLLKDAKHERFREIQKIIMDSAPYQGLVPNE Run BLAST on NCBI transcript from alignment at scaffold_139:72224..73746- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047906 ID=TCONS_00047906|Name=TCONS_00047906|organism=Clytia hemisphaerica|type=transcript|length=1523bp|location=Sequence derived from alignment at scaffold_139:72224..73746- (Clytia hemisphaerica)
GAGAGAATGATAAACCACGTGATCAGCTAATCTTAGAAATCGAAAGTGAA
ACTTTGTAAGATTTCGAAAAGTAAACAACAAAAATGGCGGCCAGAATTGG
GAAAGTTGCTGCAGACACAAGTGCATTTTTCTTGTGTGATGTACAAGACA
AATTTCGCCCTTTGATCCGATATTTTCCTGAAATCTGCACAGTTGCTAAT
CGTTTATCAGCTGCATCAAAGGCTTTGGATATTCCACTTGTAGTTTCGGA
ACATTATCCAAAAGCCCTTGGAAACACTGTTCCAGAAATTGACACCGGCC
ATGGGACCGTCTTCCCAAAAACCTCCTTTTCAATGGCTGTTAAAGATTTG
AAAGATCATGTCAAAACCGTTAGACCAAACCTCAAATCTGTCATTCTTTA
TGGAATAGAGGTAAATTTTTATGATTTTCTTTTTAGTTTTACATAAAGAA
AATCAAAATTACCCGTTACATTTCCTAAAACCAAAGTTTCACTGACAAAT
ATATTTTTAAACAATCTTAAAAATTTTTGTTAATACTGAGAAAGATTTGT
CAAAAGCAGTCTAGAATTTTAGCTTTGAACTGAAAGTTTTTCAACAGAAA
CAGTACCATGAGATCGGGTAACTTGCATCAGTGAAGGCTAACATGCATAA
CCCTCAAATGAGTAGATCATTTGTTTTGAAATTTTGCTGCTTTGATTGGT
CAGTCATTTGATGTCTATGCAAGTTTCCCTCCACTGATGCAAGCTACCGG
ACTTCATGTTATACCTTTGTTTTGGGTAACAAAAATTCCACTTTCCCGCA
CTAAGATTAGAAAAGATTAGACAAGATTAAAAAAAATGGAAAGTGGAATC
ATTAAATAGTGGAATCTTATGCAAGATGACAACATGTGAGAAATGATAAT
TAAAATAAATCGCAAATAAAATGCCAACATCATGTGCACCACAATTTAAT
GATTTACATCTCTCTGACTCAATTGTTTTTTCCTCAAACAGGCTCAAATG
TGCGTTCAACAAACTGCATTAGATTTTCTTGAAGAAGATTATGATGTCCA
TGTCATTGCAGATGCAACATCCTCTAGAACTATGACTGAGCGCTTGATGG
CTTTAGAAAGAATGAAGCAAAGTGGCGCCTTCATTACTACAAGTGAATCT
ATCTTGTTTATGTTGCTGAAAGATGCTAAGCATGAAAGATTCCGTGAAAT
TCAAAAGATTATCATGGACTCTGCACCTTATCAAGGACTTGTTCCCAATG
AATAGGACTTTGATAGTTATTATTAGGGAATATATTTTTGCACAAAAATG
CTTTAAAATTTTGATAAATACAATTTTATTATTTTTTCATAGTCTTATAT
AATAAAAATAAATCAGAAGGTGAATTTAAATCGAAAGAAATGGGTTGAAA
TACTTTTTATAAATAGAAGTTTGCTAATCCGTGTCCAGAATCTATCCATT
GAACATGCAACCGTTAAACAATCGATCTGTCAATCATCTTAGAGCCAATA
TAGACAGGTACGAGCCGGGAAGT Coding sequence (CDS) from alignment at scaffold_139:72224..73746- >TCONS_00047906 ID=TCONS_00047906|Name=TCONS_00047906|organism=Clytia hemisphaerica|type=CDS|length=1182bp|location=Sequence derived from alignment at scaffold_139:72224..73746- (Clytia hemisphaerica)
GCTCAAATGTGCGTTCAACAAACTGCATTAGATTTTCTTGAAGAAGATTA
TGATGTCCATGTCATTGCAGATGCAACATCCTCTAGAACTATGACTGAGC
GCTTGATGGCTTTAGAAAGAATGAAGCAAAGTGGCGCCTTCATTACTACA
AGTGAATCTATCTTGTTTATGTTGCTGAAAGATGCTAAGCATGAAAGATT
CCGTGAAATTCAAAAGATTATCATGGACTCTGCACCTTATCAAGGACTTG
TTCCCAATGAATAGATGGCGGCCAGAATTGGGAAAGTTGCTGCAGACACA
AGTGCATTTTTCTTGTGTGATGTACAAGACAAATTTCGCCCTTTGATCCG
ATATTTTCCTGAAATCTGCACAGTTGCTAATCGTTTATCAGCTGCATCAA
AGGCTTTGGATATTCCACTTGTAGTTTCGGAACATTATCCAAAAGCCCTT
GGAAACACTGTTCCAGAAATTGACACCGGCCATGGGACCGTCTTCCCAAA
AACCTCCTTTTCAATGGCTGTTAAAGATTTGAAAGATCATGTCAAAACCG
TTAGACCAAACCTCAAATCTGTCATTCTTTATGGAATAGAGGCTCAAATG
TGCGTTCAACAAACTGCATTAGATTTTCTTGAAGAAGATTATGATGTCCA
TGTCATTGCAGATGCAACATCCTCTAGAACTATGACTGAGCGCTTGATGG
CTTTAGAAAGAATGAAGCAAAGTGGCGCCTTCATTACTACAAGTGAATCT
ATCTTGTTTATGTTGCTGAAAGATGCTAAGCATGAAAGATTCCGTGAAAT
TCAAAAGATTATCATGGACTCTGCACCTTATCAAGGACTTGTTCCCAATG
AATAGATGGCGGCCAGAATTGGGAAAGTTGCTGCAGACACAAGTGCATTT
TTCTTGTGTGATGTACAAGACAAATTTCGCCCTTTGATCCGATATTTTCC
TGAAATCTGCACAGTTGCTAATCGTTTATCAGCTGCATCAAAGGCTTTGG
ATATTCCACTTGTAGTTTCGGAACATTATCCAAAAGCCCTTGGAAACACT
GTTCCAGAAATTGACACCGGCCATGGGACCGTCTTCCCAAAAACCTCCTT
TTCAATGGCTGTTAAAGATTTGAAAGATCATGTCAAAACCGTTAGACCAA
ACCTCAAATCTGTCATTCTTTATGGAATAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047906-exon-scaffold_139-1575043694:73337..73746 | TCONS_00047906-exon-scaffold_139-1575043694:73337..73746 | Clytia hemisphaerica | exon |
| TCONS_00047906-exon-scaffold_139-1575043694:72224..72755 | TCONS_00047906-exon-scaffold_139-1575043694:72224..72755 | Clytia hemisphaerica | exon |
| TCONS_00047906-exon-scaffold_139-1510915933:73337..73746 | TCONS_00047906-exon-scaffold_139-1510915933:73337..73746 | Clytia hemisphaerica | exon |
| TCONS_00047906-exon-scaffold_139-1510915933:72224..72755 | TCONS_00047906-exon-scaffold_139-1510915933:72224..72755 | Clytia hemisphaerica | exon |
| TCONS_00047906-exon-scaffold_139-1491911889:73337..73746 | TCONS_00047906-exon-scaffold_139-1491911889:73337..73746 | Clytia hemisphaerica | exon |
| TCONS_00047906-exon-scaffold_139-1491911889:72224..72755 | TCONS_00047906-exon-scaffold_139-1491911889:72224..72755 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_139 | supercontig | scaffold_139:72224..73746 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000868 | Isochorismatase-like |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003824 | catalytic activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0008152 | metabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0008152 |
metabolic process |
| molecular_function |
GO:0003824 |
catalytic activity |
Blast
BLAST of TCONS_00047906 vs. Swiss-Prot (Human)
Match: ISOC1 (Isochorismatase domain-containing protein 1 OS=Homo sapiens GN=ISOC1 PE=1 SV=3) HSP 1 Score: 191.815 bits (486), Expect = 4.401e-58 Identity = 86/190 (45.26%), Postives = 134/190 (70.53%), Query Frame = 3
Query: 96 IGKVAADTSAFFLCDVQDKFRPLIRYFPEICTVANRLSAASKALDIPLVVSEHYPKALGNTVPEID-TGHGTVFPKTSFSMAVKDLKDHVKTVRPNLKSVILYGIEAQMCVQQTALDFLEEDYDVHVIADATSSRTMTERLMALERMKQSGAFITTSESILFMLLKDAKHERFREIQKIIMDSAPYQGLV 662
+G + ++ FF CD+Q++FRP I+YF +I +V RL ++ L IP++V+E YPK LG+TV EID TG V PKT FSM + +++ + + P ++SV+L+G+E +C+QQTAL+ + +VH++ADATSSR+M +R+ ALER+ ++G +TTSE++L L+ D H +F+EIQ +I SAP GL+
Sbjct: 107 LGNLTPSSTVFFCCDMQERFRPAIKYFGDIISVGQRLLQGARILGIPVIVTEQYPKGLGSTVQEIDLTGVKLVLPKTKFSMVLPEVEAALAEI-PGVRSVVLFGVETHVCIQQTALELVGRGVEVHIVADATSSRSMMDRMFALERLARTGIIVTTSEAVLLQLVADKDHPKFKEIQNLIKASAPESGLL 295
The following BLAST results are available for this feature:
|
