Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047901 ID=TCONS_00047901|Name=TCONS_00047901|organism=Clytia hemisphaerica|type=transcript|length=2199bpRun BLAST on NCBI transcript from alignment at scaffold_139:651124..657317+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047901 ID=TCONS_00047901|Name=TCONS_00047901|organism=Clytia hemisphaerica|type=transcript|length=6194bp|location=Sequence derived from alignment at scaffold_139:651124..657317+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00047901 vs. Swiss-Prot (Human)
Match: TRAF6 (TNF receptor-associated factor 6 OS=Homo sapiens GN=TRAF6 PE=1 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 6.205e-24 Identity = 70/239 (29.29%), Postives = 117/239 (48.95%), Query Frame = 1 Query: 166 VEYGRGYDFDLVNEEQKVSDLECTICHLLLRDAHSTPCHHAFCHGCLVKWNNEQPTRRRMSTRCPSCNVQYDPDKISFNGVVDRMVKTSIDVKCPQHEKGCQWQGKIIDYKDHEEKCDYEMIRCKNKGCQENVARLKMNYH-EGNCGYRRVECDFCCLEMSAREIENHHGECPFINVECPNDECQLEYLRQEIPKHLAEECLYEKIACEYSDVGCNQKVQRKDMEEHNKINLAKHQKLM 879 +E +GYD + + S EC IC + LR+A TPC H FC C++K + R +CP N +++ + R + S+ VKCP +GC + ++ +DH+ C++ ++ C CQ + +N H +C R+V CD C M+ + E H CP NV C + C +R+++P H +C I C +S GC++K+QR + H + N H +++ Sbjct: 50 MEEIQGYDVEF--DPPLESKYECPICLMALREAVQTPCGHRFCKACIIK------SIRDAGHKCPVDNEILLENQLFPDNFAKREI-LSLMVKCPN--EGCLHKMELRHLEDHQAHCEFALMDCPQ--CQRPFQKFHINIHILKDCPRRQVSCDNCAASMAFEDKEIHDQNCPLANVIC--EYCNTILIREQMPNHYDLDCPTAPIPCTFSTFGCHEKMQRNHLARHLQENTQSHMRML 273 The following BLAST results are available for this feature:
BLAST of TCONS_00047901 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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